Wall clock time and date at job start Tue Mar 31 2020 20:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47103 * 2 1 4 4 N 1.46893 * 109.47385 * 240.00120 * 2 1 3 5 5 C 1.46902 * 111.00019 * 84.99611 * 4 2 1 6 6 C 1.50703 * 109.47056 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00150 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.37108 * 120.00275 * 180.02562 * 8 6 5 10 10 H 1.07996 * 119.99868 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99867 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00207 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99674 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47157 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47038 * 119.99950 * 13 11 9 16 16 H 1.48501 * 109.46776 * 239.99898 * 13 11 9 17 17 C 1.53005 * 109.47144 * 119.99895 * 2 1 3 18 18 H 1.09001 * 109.47023 * 184.99870 * 17 2 1 19 19 C 1.53000 * 109.46886 * 65.00006 * 17 2 1 20 20 N 1.46499 * 109.47319 * 305.00084 * 17 2 1 21 21 C 1.34771 * 119.99983 * 204.99839 * 20 17 2 22 22 O 1.21614 * 120.00402 * 0.02562 * 21 20 17 23 23 C 1.47103 * 119.99947 * 179.97438 * 21 20 17 24 24 C 1.32990 * 120.00290 * 186.98445 * 23 21 20 25 25 C 1.51267 * 120.84598 * 12.17684 * 24 23 21 26 26 C 1.53672 * 108.31065 * 128.61835 * 25 24 23 27 27 C 1.52954 * 109.32395 * 54.86038 * 26 25 24 28 28 C 1.52967 * 109.81335 * 296.27007 * 27 26 25 29 29 C 1.51272 * 120.85240 * 192.45063 * 24 23 21 30 30 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46725 * 299.99951 * 1 2 3 32 32 H 1.08997 * 109.47015 * 59.99785 * 1 2 3 33 33 H 1.00903 * 111.00307 * 321.04644 * 4 2 1 34 34 H 1.08988 * 109.47464 * 300.00117 * 5 4 2 35 35 H 1.08998 * 109.46818 * 60.01025 * 5 4 2 36 36 H 0.97008 * 120.00029 * 0.02562 * 8 6 5 37 37 H 0.97008 * 119.99701 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47179 * 60.00003 * 19 17 2 39 39 H 1.09004 * 109.46988 * 179.97438 * 19 17 2 40 40 H 1.08997 * 109.47376 * 300.00244 * 19 17 2 41 41 H 0.97001 * 119.99640 * 24.72509 * 20 17 2 42 42 H 1.08003 * 119.99827 * 6.98768 * 23 21 20 43 43 H 1.09004 * 109.62432 * 248.38570 * 25 24 23 44 44 H 1.08991 * 109.62926 * 8.95531 * 25 24 23 45 45 H 1.08999 * 109.61947 * 294.83664 * 26 25 24 46 46 H 1.08999 * 109.41453 * 174.74983 * 26 25 24 47 47 H 1.09002 * 109.41234 * 176.17135 * 27 26 25 48 48 H 1.08992 * 109.41713 * 56.37550 * 27 26 25 49 49 H 1.09001 * 109.48383 * 303.62172 * 28 27 26 50 50 H 1.09003 * 109.47747 * 183.58257 * 28 27 26 51 51 H 1.08999 * 109.62783 * 351.04775 * 29 24 23 52 52 H 1.09000 * 109.61953 * 111.61477 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3468 6 6 2.5874 -0.5217 -3.5560 7 8 2.8679 -1.6987 -3.4702 8 7 2.7283 0.1205 -4.7324 9 6 3.1872 -0.5568 -5.8326 10 1 3.4361 -1.6049 -5.7564 11 6 3.3319 0.1053 -7.0456 12 7 3.0284 1.3805 -7.1385 13 14 3.9578 -0.8174 -8.5444 14 1 4.2266 -2.2313 -8.1787 15 1 2.9335 -0.7697 -9.6185 16 1 5.2114 -0.1846 -9.0274 17 6 2.0400 -0.7212 1.2493 18 1 3.1264 -0.6443 1.2952 19 6 1.6353 -2.1955 1.1880 20 7 1.4559 -0.1037 2.4424 21 6 2.0913 -0.1938 3.6275 22 8 3.1498 -0.7874 3.7065 23 6 1.5050 0.4268 4.8255 24 6 2.1941 0.4593 5.9625 25 6 3.6678 0.1191 5.9862 26 6 4.4138 1.2538 6.7055 27 6 3.7951 1.4699 8.0876 28 6 2.3454 1.9350 7.9397 29 6 1.5229 0.8316 7.2660 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.4497 -1.4979 -1.4101 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 2.5050 1.0621 -4.8008 37 1 3.1298 1.8428 -7.9853 38 1 2.0699 -2.6550 0.3002 39 1 1.9990 -2.7094 2.0778 40 1 0.5490 -2.2724 1.1420 41 1 0.6138 0.3735 2.3786 42 1 0.5149 0.8559 4.7817 43 1 3.8185 -0.8186 6.5211 44 1 4.0384 0.0251 4.9655 45 1 4.3329 2.1717 6.1233 46 1 5.4642 0.9843 6.8156 47 1 4.3654 2.2273 8.6254 48 1 3.8202 0.5343 8.6461 49 1 2.3135 2.8369 7.3283 50 1 1.9298 2.1483 8.9246 51 1 0.5148 1.1955 7.0679 52 1 1.4786 -0.0414 7.9172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725079563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:20 Heat of formation + Delta-G solvation = -93.744603 kcal Electronic energy + Delta-G solvation = -28796.941809 eV Core-core repulsion = 24794.944620 eV Total energy + Delta-G solvation = -4001.997189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.20403 -40.23239 -39.25928 -38.26734 -36.05532 -35.34051 -33.68639 -33.27386 -32.00632 -31.84182 -30.07483 -28.07400 -27.71653 -26.03249 -25.12438 -23.84876 -22.78446 -21.37818 -21.16197 -20.81435 -19.94594 -19.53262 -18.11106 -17.63926 -17.13249 -16.79389 -16.42028 -16.33035 -16.09513 -15.70709 -15.60667 -15.45623 -15.18086 -15.07547 -14.68815 -14.47475 -14.24395 -14.13706 -13.82553 -13.55107 -13.51130 -13.34526 -13.25503 -13.11956 -13.04951 -12.87326 -12.78010 -12.52905 -12.40439 -12.11866 -12.01505 -11.89413 -11.83462 -11.74013 -11.59008 -11.51273 -11.17550 -10.46007 -10.36322 -10.01232 -9.98539 -9.80575 -9.30588 -8.46994 -5.95502 0.42239 1.36435 1.41832 1.55964 2.05543 2.17298 2.31436 2.34414 3.00920 3.20510 3.54956 3.71122 3.80269 3.81708 3.90903 4.05671 4.07876 4.20830 4.23711 4.29735 4.35427 4.46186 4.46503 4.48454 4.51932 4.55812 4.62280 4.65614 4.74181 4.80757 4.86969 4.96451 5.00615 5.03092 5.07114 5.14664 5.18759 5.19283 5.23059 5.34941 5.41258 5.41990 5.45055 5.56798 5.64976 5.78176 5.89552 6.10241 6.40891 6.60185 6.67499 7.12899 7.37425 7.56508 8.12046 8.70554 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.001662 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.133945 B =16840.646928 C =17088.990034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.088 0.912 4 N -0.676 5.676 5 C 0.068 3.932 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.274 1.274 15 H -0.269 1.269 16 H -0.272 1.272 17 C 0.161 3.839 18 H 0.061 0.939 19 C -0.154 4.154 20 N -0.708 5.708 21 C 0.538 3.462 22 O -0.579 6.579 23 C -0.240 4.240 24 C -0.019 4.019 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.115 4.115 29 C -0.090 4.090 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.349 0.651 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.972 5.759 30.174 32.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.107 0.893 4 N -0.309 5.309 5 C -0.065 4.065 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.197 1.197 17 C 0.055 3.945 18 H 0.079 0.921 19 C -0.212 4.212 20 N -0.361 5.361 21 C 0.330 3.670 22 O -0.461 6.461 23 C -0.261 4.261 24 C -0.021 4.021 25 C -0.162 4.162 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.153 4.153 29 C -0.127 4.127 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.175 0.825 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.111 0.889 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.394 4.783 30.246 31.502 hybrid contribution -0.739 0.183 -1.466 1.652 sum -8.132 4.966 28.780 30.316 Atomic orbital electron populations 1.22551 0.94907 1.03229 1.03476 1.21704 0.94480 0.97740 0.88690 0.89347 1.59958 1.58921 1.09253 1.02776 1.21540 1.01320 0.95175 0.88425 1.20912 0.83422 0.88022 0.85181 1.90499 1.56598 1.18425 1.85455 1.41930 1.58367 1.12581 1.08177 1.19705 1.42157 0.95942 0.88542 0.90404 1.26023 0.97226 0.96627 1.01350 1.69676 1.48672 1.09639 1.28081 0.84876 0.78174 0.78001 0.77311 1.19914 1.19462 1.19703 1.20588 0.97688 0.92630 0.83545 0.92123 1.22071 1.02067 0.95636 1.01475 1.45955 1.26397 1.56406 1.07308 1.19136 0.83669 0.79782 0.84425 1.90641 1.24169 1.45450 1.85889 1.22421 1.03314 1.08441 0.91895 1.22962 0.95106 0.89022 0.94985 1.21597 0.92323 0.98422 1.03896 1.21655 0.99261 0.97762 0.96617 1.21570 0.96390 1.01877 0.96167 1.21585 0.94659 0.97658 1.01388 1.21039 0.99246 0.99991 0.92412 0.91616 0.89572 0.91967 0.83134 0.90976 0.88045 0.76938 0.91311 0.91996 0.94001 0.90863 0.74885 0.82480 0.91291 0.89055 0.92502 0.91794 0.91037 0.91657 0.91852 0.89789 0.88912 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.68 71.98 0.62 -2.26 16 2 C 0.08 1.85 2.64 44.92 0.12 1.96 16 3 H 0.09 1.85 7.80 -2.39 -0.02 1.84 16 4 N -0.68 -20.73 5.23 -495.59 -2.59 -23.32 16 5 C 0.07 2.26 5.97 85.56 0.51 2.77 16 6 C 0.44 20.80 7.82 87.66 0.69 21.48 16 7 O -0.62 -34.83 15.78 -3.07 -0.05 -34.88 16 8 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 9 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.64 13.05 21.66 0.28 -49.35 16 13 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 17 C 0.16 3.84 2.63 44.99 0.12 3.96 16 18 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 19 C -0.15 -3.79 8.86 71.98 0.64 -3.15 16 20 N -0.71 -13.05 4.99 -446.13 -2.22 -15.27 16 21 C 0.54 12.16 7.58 86.57 0.66 12.82 16 22 O -0.58 -18.01 12.88 -4.08 -0.05 -18.06 16 23 C -0.24 -3.75 9.65 23.43 0.23 -3.52 16 24 C -0.02 -0.29 5.38 -17.25 -0.09 -0.38 16 25 C -0.13 -2.47 5.32 30.25 0.16 -2.31 16 26 C -0.12 -1.76 5.95 30.81 0.18 -1.58 16 27 C -0.12 -1.29 5.81 30.57 0.18 -1.12 16 28 C -0.12 -0.96 5.94 30.66 0.18 -0.77 16 29 C -0.09 -0.81 6.04 30.10 0.18 -0.63 16 30 H 0.06 1.07 6.55 -2.39 -0.02 1.05 16 31 H 0.09 0.86 6.29 -2.38 -0.02 0.85 16 32 H 0.06 1.02 7.45 -2.39 -0.02 1.01 16 33 H 0.35 11.17 7.39 -89.69 -0.66 10.51 16 34 H 0.07 2.04 7.43 -2.39 -0.02 2.02 16 35 H 0.10 3.11 8.06 -2.39 -0.02 3.09 16 36 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 37 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 38 H 0.06 1.76 7.13 -2.38 -0.02 1.74 16 39 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 1.46 6.57 -2.39 -0.02 1.45 16 41 H 0.41 4.78 6.56 -92.71 -0.61 4.18 16 42 H 0.16 1.34 7.96 -2.91 -0.02 1.32 16 43 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.09 2.44 4.78 -17.48 -0.08 2.35 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.09 0.52 7.92 -2.39 -0.02 0.50 16 52 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.27 407.65 0.29 -72.97 By element: Atomic # 1 Polarization: 46.09 SS G_CDS: -1.13 Total: 44.96 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.65 Total: 8.76 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.16 Total: -119.03 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.10 Total: -52.94 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -73.27 0.29 -72.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725079563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.772 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds