Wall clock time and date at job start Tue Mar 31 2020 20:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51276 * 120.84837 * 2 1 4 4 C 1.53228 * 108.53512 * 128.62511 * 3 2 1 5 5 C 1.52959 * 109.40193 * 54.63254 * 4 3 2 6 6 C 1.50695 * 109.41247 * 176.29348 * 5 4 3 7 7 O 1.21276 * 120.00310 * 120.35347 * 6 5 4 8 8 N 1.34777 * 119.99776 * 300.35010 * 6 5 4 9 9 C 1.46506 * 120.00169 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46949 * 34.99407 * 9 8 6 11 11 C 1.53003 * 109.46791 * 275.00135 * 9 8 6 12 12 C 1.52994 * 109.47539 * 155.00062 * 9 8 6 13 13 H 1.08998 * 109.47534 * 59.99704 * 12 9 8 14 14 C 1.53004 * 109.46774 * 299.99795 * 12 9 8 15 15 N 1.46902 * 109.47268 * 180.02562 * 12 9 8 16 16 C 1.46897 * 110.99707 * 205.00217 * 15 12 9 17 17 C 1.50703 * 109.47097 * 179.97438 * 16 15 12 18 18 O 1.21295 * 119.99931 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00216 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00169 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99777 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00183 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99881 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00198 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47362 * 60.00074 * 24 22 20 26 26 H 1.48497 * 109.47296 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47248 * 300.00047 * 24 22 20 28 28 C 1.52957 * 109.81520 * 296.39783 * 5 4 3 29 29 C 1.51262 * 120.85386 * 179.97438 * 2 1 3 30 30 H 1.07996 * 120.00369 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99619 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.62630 * 248.34550 * 3 2 1 33 33 H 1.09003 * 109.62166 * 8.91449 * 3 2 1 34 34 H 1.09000 * 109.47520 * 174.60722 * 4 3 2 35 35 H 1.08996 * 109.48625 * 294.65158 * 4 3 2 36 36 H 1.09005 * 109.41693 * 56.50453 * 5 4 3 37 37 H 0.97001 * 120.00472 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47044 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.46780 * 299.99376 * 11 9 8 40 40 H 1.08993 * 109.47202 * 59.99596 * 11 9 8 41 41 H 1.08996 * 109.47479 * 299.99617 * 14 12 9 42 42 H 1.09001 * 109.47174 * 60.00222 * 14 12 9 43 43 H 1.09006 * 109.47016 * 180.02562 * 14 12 9 44 44 H 1.00896 * 111.00246 * 81.03987 * 15 12 9 45 45 H 1.09005 * 109.46892 * 299.98981 * 16 15 12 46 46 H 1.08997 * 109.48056 * 59.99094 * 16 15 12 47 47 H 0.96998 * 120.00069 * 0.02562 * 19 17 16 48 48 H 0.96994 * 119.99948 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.48115 * 303.61768 * 28 5 4 50 50 H 1.09004 * 109.48235 * 183.57850 * 28 5 4 51 51 H 1.09001 * 109.62371 * 351.08200 * 29 2 1 52 52 H 1.08995 * 109.63006 * 111.46145 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1140 1.2519 1.1350 5 6 3.9804 0.0004 0.9844 6 6 5.0496 0.0006 2.0463 7 8 5.1119 -0.9104 2.8444 8 7 5.9368 1.0133 2.1090 9 6 6.9767 1.0134 3.1410 10 1 7.2999 -0.0101 3.3311 11 6 6.4163 1.6188 4.4295 12 6 8.1691 1.8445 2.6635 13 1 7.8459 2.8679 2.4734 14 6 8.7294 1.2389 1.3749 15 7 9.2121 1.8440 3.6980 16 6 10.0661 3.0338 3.5850 17 6 11.1212 2.9988 4.6605 18 8 11.1577 2.0738 5.4444 19 7 12.0242 3.9951 4.7514 20 6 12.9837 3.9635 5.7302 21 1 13.0162 3.1400 6.4281 22 6 13.9150 4.9905 5.8236 23 7 13.8757 5.9924 4.9740 24 14 15.2228 4.9471 7.1567 25 1 16.0512 3.7250 6.9978 26 1 16.0865 6.1495 7.0421 27 1 14.5698 4.9325 8.4904 28 6 3.1141 -1.2512 1.1354 29 6 2.0857 -1.2986 0.0006 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 2.5986 1.4188 -0.9541 33 1 1.4025 2.1331 0.1591 34 1 3.7458 2.1390 1.0898 35 1 2.5963 1.2224 2.0937 36 1 4.4488 0.0002 0.0001 37 1 5.8873 1.7418 1.4704 38 1 7.1898 1.6185 5.1975 39 1 6.0931 2.6423 4.2394 40 1 5.5668 1.0268 4.7697 41 1 9.0528 0.2155 1.5650 42 1 7.9558 1.2389 0.6071 43 1 9.5793 1.8308 1.0349 44 1 9.7618 0.9989 3.6569 45 1 10.5452 3.0455 2.6060 46 1 9.4577 3.9305 3.7025 47 1 11.9948 4.7350 4.1249 48 1 14.5256 6.7094 5.0394 49 1 2.5964 -1.2214 2.0942 50 1 3.7460 -2.1382 1.0907 51 1 1.4027 -2.1329 0.1601 52 1 2.5960 -1.4207 -0.9548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725113049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:16 Heat of formation + Delta-G solvation = -80.835109 kcal Electronic energy + Delta-G solvation = -29035.272340 eV Core-core repulsion = 25033.834948 eV Total energy + Delta-G solvation = -4001.437391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53393 -38.72292 -38.16193 -37.08393 -34.53633 -33.82775 -33.27091 -31.54077 -31.25687 -30.57250 -29.58294 -27.09149 -26.28607 -24.24266 -23.60674 -23.30260 -22.10944 -20.74760 -20.20337 -19.28181 -18.81139 -17.92466 -17.43214 -16.42991 -15.94876 -15.37986 -15.28090 -15.26942 -15.04722 -14.57944 -14.43432 -14.12914 -13.99675 -13.93326 -13.77664 -13.58632 -13.41996 -13.17081 -12.91604 -12.76544 -12.34254 -12.19580 -12.10916 -12.01111 -11.76462 -11.59256 -11.55186 -11.47430 -11.46084 -11.25471 -11.01914 -11.00767 -10.68118 -10.58639 -10.44487 -10.21810 -9.85470 -9.50482 -9.41155 -9.19370 -8.47270 -8.06908 -7.96400 -6.42293 -3.83124 1.85158 2.51197 2.96508 3.20100 3.25758 3.30447 3.90125 4.10738 4.14339 4.26689 4.36081 4.43124 4.59527 4.63561 4.68968 4.84529 4.92181 4.96876 4.98583 5.12142 5.12877 5.17497 5.26043 5.29533 5.34429 5.44798 5.46546 5.51044 5.52599 5.64858 5.65822 5.67351 5.69035 5.79188 5.81863 5.91193 5.95262 6.00182 6.05295 6.10935 6.24389 6.25308 6.40456 6.47127 6.58469 7.16594 7.37171 7.54664 7.61502 8.05538 8.11470 8.60576 9.17361 9.53513 10.05038 10.75333 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034923 B = 0.001673 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.581787 B =16733.114523 C =16960.676840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.107 4.107 5 C -0.106 4.106 6 C 0.517 3.483 7 O -0.537 6.537 8 N -0.724 5.724 9 C 0.153 3.847 10 H 0.088 0.912 11 C -0.151 4.151 12 C 0.078 3.922 13 H 0.080 0.920 14 C -0.184 4.184 15 N -0.658 5.658 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.096 4.096 29 C -0.087 4.087 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.396 0.604 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.353 0.647 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.633 -7.115 -15.573 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.145 4.145 5 C -0.128 4.128 6 C 0.303 3.697 7 O -0.413 6.413 8 N -0.375 5.375 9 C 0.048 3.952 10 H 0.106 0.894 11 C -0.210 4.210 12 C -0.034 4.034 13 H 0.099 0.901 14 C -0.243 4.243 15 N -0.290 5.290 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.133 4.133 29 C -0.124 4.124 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.230 0.770 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.173 0.827 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.801 -7.950 -13.962 28.716 hybrid contribution 1.185 0.806 -0.957 1.723 sum -22.616 -7.144 -14.919 28.020 Atomic orbital electron populations 1.23644 0.95019 1.01864 1.02941 1.21987 0.95104 0.95852 0.99153 1.20813 0.97505 0.95023 0.98837 1.21541 0.97128 0.96156 0.99659 1.21339 0.95037 0.97734 0.98667 1.20587 0.82084 0.81623 0.85421 1.90715 1.72915 1.35880 1.41822 1.46118 1.31924 1.24980 1.34528 1.20874 0.86103 1.00941 0.87264 0.89401 1.22024 1.01600 0.99663 0.97690 1.21752 0.92608 0.99322 0.89683 0.90141 1.22536 1.01433 1.01709 0.98592 1.59997 1.16114 1.05482 1.47397 1.21686 0.94786 0.94187 0.97314 1.19800 0.84522 0.85074 0.88050 1.90535 1.75036 1.36148 1.44889 1.41850 1.26979 1.21060 1.30127 1.19661 1.06427 1.07733 1.09139 0.87959 1.25255 0.98924 0.95292 0.98423 1.69604 1.37341 1.10641 1.36780 0.85914 0.80036 0.77538 0.80712 1.19925 1.20991 1.19879 1.21343 0.96505 0.96584 0.98907 1.20846 0.97636 0.94838 0.99076 0.88496 0.88480 0.90641 0.90897 0.91094 0.91055 0.88572 0.76990 0.89577 0.93253 0.93182 0.92201 0.92286 0.92258 0.82716 0.93820 0.89621 0.77496 0.91841 0.91056 0.90760 0.90988 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 13.99 29.02 0.41 -0.78 16 2 C -0.12 -0.76 5.35 -100.51 -0.54 -1.30 16 3 C -0.08 -0.45 6.03 -27.48 -0.17 -0.61 16 4 C -0.11 -0.64 5.14 -26.63 -0.14 -0.78 16 5 C -0.11 -0.77 2.42 -91.82 -0.22 -0.99 16 6 C 0.52 5.40 7.12 -10.99 -0.08 5.33 16 7 O -0.54 -7.96 15.60 5.56 0.09 -7.87 16 8 N -0.72 -6.49 4.25 -53.81 -0.23 -6.72 16 9 C 0.15 1.77 2.34 -67.93 -0.16 1.61 16 10 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 11 C -0.15 -1.93 9.33 37.16 0.35 -1.58 16 12 C 0.08 0.87 2.22 -67.71 -0.15 0.72 16 13 H 0.08 0.83 7.80 -51.93 -0.41 0.42 16 14 C -0.18 -1.82 9.00 37.16 0.33 -1.48 16 15 N -0.66 -9.98 5.11 -107.99 -0.55 -10.53 16 16 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 17 C 0.44 10.19 7.82 -10.98 -0.09 10.11 16 18 O -0.58 -15.65 15.78 5.54 0.09 -15.56 16 19 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.10 -0.75 4.54 -26.64 -0.12 -0.88 16 29 C -0.09 -0.54 6.03 -27.49 -0.17 -0.70 16 30 H 0.10 0.51 7.92 -52.49 -0.42 0.10 16 31 H 0.10 0.53 7.92 -52.48 -0.42 0.11 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 34 H 0.07 0.34 7.44 -51.93 -0.39 -0.05 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.40 2.49 7.73 -40.82 -0.32 2.17 16 38 H 0.09 1.28 7.61 -51.93 -0.39 0.89 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 42 H 0.06 0.47 7.44 -51.93 -0.39 0.09 16 43 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 44 H 0.35 5.72 8.17 -39.29 -0.32 5.40 16 45 H 0.04 0.66 7.43 -51.93 -0.39 0.27 16 46 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 51 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 52 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 417.24 15.07 6.29 6.29 Total: -1.00 -32.50 417.24 -8.76 -41.26 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -9.07 Total: 13.40 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.01 Total: 1.54 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.11 Total: -55.06 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.50 -8.76 -41.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725113049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.574 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds