Wall clock time and date at job start Tue Mar 31 2020 20:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51276 * 120.84837 * 2 1 4 4 C 1.53228 * 108.53512 * 128.62511 * 3 2 1 5 5 C 1.52959 * 109.40193 * 54.63254 * 4 3 2 6 6 C 1.50695 * 109.41247 * 176.29348 * 5 4 3 7 7 O 1.21276 * 120.00310 * 120.35347 * 6 5 4 8 8 N 1.34777 * 119.99776 * 300.35010 * 6 5 4 9 9 C 1.46506 * 120.00169 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46949 * 34.99407 * 9 8 6 11 11 C 1.53003 * 109.46791 * 275.00135 * 9 8 6 12 12 C 1.52994 * 109.47539 * 155.00062 * 9 8 6 13 13 H 1.08998 * 109.47534 * 59.99704 * 12 9 8 14 14 C 1.53004 * 109.46774 * 299.99795 * 12 9 8 15 15 N 1.46902 * 109.47268 * 180.02562 * 12 9 8 16 16 C 1.46897 * 110.99707 * 205.00217 * 15 12 9 17 17 C 1.50703 * 109.47097 * 179.97438 * 16 15 12 18 18 O 1.21295 * 119.99931 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00216 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00169 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99777 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00183 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99881 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00198 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47362 * 60.00074 * 24 22 20 26 26 H 1.48497 * 109.47296 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47248 * 300.00047 * 24 22 20 28 28 C 1.52957 * 109.81520 * 296.39783 * 5 4 3 29 29 C 1.51262 * 120.85386 * 179.97438 * 2 1 3 30 30 H 1.07996 * 120.00369 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99619 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.62630 * 248.34550 * 3 2 1 33 33 H 1.09003 * 109.62166 * 8.91449 * 3 2 1 34 34 H 1.09000 * 109.47520 * 174.60722 * 4 3 2 35 35 H 1.08996 * 109.48625 * 294.65158 * 4 3 2 36 36 H 1.09005 * 109.41693 * 56.50453 * 5 4 3 37 37 H 0.97001 * 120.00472 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47044 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.46780 * 299.99376 * 11 9 8 40 40 H 1.08993 * 109.47202 * 59.99596 * 11 9 8 41 41 H 1.08996 * 109.47479 * 299.99617 * 14 12 9 42 42 H 1.09001 * 109.47174 * 60.00222 * 14 12 9 43 43 H 1.09006 * 109.47016 * 180.02562 * 14 12 9 44 44 H 1.00896 * 111.00246 * 81.03987 * 15 12 9 45 45 H 1.09005 * 109.46892 * 299.98981 * 16 15 12 46 46 H 1.08997 * 109.48056 * 59.99094 * 16 15 12 47 47 H 0.96998 * 120.00069 * 0.02562 * 19 17 16 48 48 H 0.96994 * 119.99948 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.48115 * 303.61768 * 28 5 4 50 50 H 1.09004 * 109.48235 * 183.57850 * 28 5 4 51 51 H 1.09001 * 109.62371 * 351.08200 * 29 2 1 52 52 H 1.08995 * 109.63006 * 111.46145 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1140 1.2519 1.1350 5 6 3.9804 0.0004 0.9844 6 6 5.0496 0.0006 2.0463 7 8 5.1119 -0.9104 2.8444 8 7 5.9368 1.0133 2.1090 9 6 6.9767 1.0134 3.1410 10 1 7.2999 -0.0101 3.3311 11 6 6.4163 1.6188 4.4295 12 6 8.1691 1.8445 2.6635 13 1 7.8459 2.8679 2.4734 14 6 8.7294 1.2389 1.3749 15 7 9.2121 1.8440 3.6980 16 6 10.0661 3.0338 3.5850 17 6 11.1212 2.9988 4.6605 18 8 11.1577 2.0738 5.4444 19 7 12.0242 3.9951 4.7514 20 6 12.9837 3.9635 5.7302 21 1 13.0162 3.1400 6.4281 22 6 13.9150 4.9905 5.8236 23 7 13.8757 5.9924 4.9740 24 14 15.2228 4.9471 7.1567 25 1 16.0512 3.7250 6.9978 26 1 16.0865 6.1495 7.0421 27 1 14.5698 4.9325 8.4904 28 6 3.1141 -1.2512 1.1354 29 6 2.0857 -1.2986 0.0006 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 2.5986 1.4188 -0.9541 33 1 1.4025 2.1331 0.1591 34 1 3.7458 2.1390 1.0898 35 1 2.5963 1.2224 2.0937 36 1 4.4488 0.0002 0.0001 37 1 5.8873 1.7418 1.4704 38 1 7.1898 1.6185 5.1975 39 1 6.0931 2.6423 4.2394 40 1 5.5668 1.0268 4.7697 41 1 9.0528 0.2155 1.5650 42 1 7.9558 1.2389 0.6071 43 1 9.5793 1.8308 1.0349 44 1 9.7618 0.9989 3.6569 45 1 10.5452 3.0455 2.6060 46 1 9.4577 3.9305 3.7025 47 1 11.9948 4.7350 4.1249 48 1 14.5256 6.7094 5.0394 49 1 2.5964 -1.2214 2.0942 50 1 3.7460 -2.1382 1.0907 51 1 1.4027 -2.1329 0.1601 52 1 2.5960 -1.4207 -0.9548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725113049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:15 Heat of formation + Delta-G solvation = -103.219012 kcal Electronic energy + Delta-G solvation = -29036.242978 eV Core-core repulsion = 25033.834948 eV Total energy + Delta-G solvation = -4002.408030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34088 -40.20922 -39.11005 -38.15696 -36.04312 -35.38790 -33.88547 -33.25621 -32.11351 -31.55174 -30.56524 -28.00091 -27.54415 -25.83271 -24.58688 -23.82983 -22.85426 -21.73411 -21.03981 -20.96378 -19.90688 -19.28892 -18.32333 -17.59043 -17.38405 -16.68074 -16.37524 -16.12149 -15.96431 -15.72108 -15.65627 -15.20576 -15.16344 -15.05057 -14.63510 -14.42847 -14.29752 -14.20615 -13.94979 -13.66265 -13.49650 -13.34749 -13.26044 -13.05571 -12.97562 -12.70390 -12.57590 -12.50504 -12.42324 -12.34848 -12.20878 -12.12060 -11.94573 -11.67628 -11.53162 -11.49323 -11.08365 -10.71472 -10.34614 -10.08868 -9.99988 -9.86832 -9.27162 -8.45737 -5.94155 1.40208 1.40232 1.42280 1.52769 1.68866 2.07549 2.11072 2.31412 3.02944 3.21833 3.55902 3.62720 3.65618 3.76510 3.85525 4.05801 4.11307 4.17287 4.23231 4.33269 4.34990 4.41829 4.49054 4.49660 4.50475 4.60096 4.63489 4.64789 4.81792 4.83590 4.86805 4.88057 4.99123 5.03814 5.07606 5.10205 5.16620 5.20674 5.23709 5.25075 5.36997 5.38394 5.41892 5.57822 5.81185 5.91578 6.02692 6.12472 6.36976 6.61566 6.62783 7.14154 7.33406 7.58209 8.14140 8.71251 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034923 B = 0.001673 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.581787 B =16733.114523 C =16960.676840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.081 4.081 4 C -0.103 4.103 5 C -0.097 4.097 6 C 0.514 3.486 7 O -0.587 6.587 8 N -0.707 5.707 9 C 0.161 3.839 10 H 0.059 0.941 11 C -0.144 4.144 12 C 0.085 3.915 13 H 0.103 0.897 14 C -0.178 4.178 15 N -0.674 5.674 16 C 0.070 3.930 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.094 4.094 29 C -0.082 4.082 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.123 0.877 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.344 0.656 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.048 0.952 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.307 -5.470 -17.925 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.132 4.132 3 C -0.118 4.118 4 C -0.141 4.141 5 C -0.118 4.118 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.360 5.360 9 C 0.055 3.945 10 H 0.077 0.923 11 C -0.203 4.203 12 C -0.025 4.025 13 H 0.121 0.879 14 C -0.237 4.237 15 N -0.306 5.306 16 C -0.062 4.062 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.132 4.132 29 C -0.119 4.119 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.163 0.837 45 H 0.088 0.912 46 H 0.126 0.874 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.499 -6.257 -16.369 30.121 hybrid contribution 1.319 0.235 -0.211 1.357 sum -23.180 -6.022 -16.580 29.128 Atomic orbital electron populations 1.23787 0.95189 1.02354 1.02704 1.22142 0.95358 0.96301 0.99388 1.20831 0.97305 0.94571 0.99112 1.21532 0.97277 0.96021 0.99232 1.21346 0.94045 0.98006 0.98429 1.21229 0.82374 0.80858 0.85360 1.90702 1.74186 1.37876 1.43934 1.45897 1.30760 1.25278 1.34023 1.20594 0.86933 0.99335 0.87619 0.92267 1.21923 1.00224 1.00499 0.97636 1.21761 0.91034 1.00539 0.89193 0.87902 1.22471 1.02197 1.00792 0.98214 1.59950 1.16322 1.04489 1.49810 1.21534 0.93395 0.95646 0.95648 1.20959 0.84678 0.83477 0.88490 1.90506 1.76147 1.37576 1.46910 1.41908 1.27238 1.21874 1.29981 1.19619 1.08526 1.07994 1.10379 0.90495 1.25989 1.00258 0.94578 1.00260 1.69657 1.37916 1.10831 1.37541 0.85019 0.77592 0.77945 0.77966 1.19805 1.19409 1.19899 1.21289 0.96731 0.96593 0.98622 1.20811 0.97193 0.95138 0.98772 0.87765 0.88405 0.89019 0.90185 0.89104 0.92834 0.85931 0.74775 0.92128 0.91536 0.94538 0.93466 0.89766 0.92029 0.83718 0.91222 0.87417 0.76900 0.91309 0.93315 0.92170 0.91033 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 13.99 67.78 0.95 -1.20 16 2 C -0.13 -1.41 5.35 -16.12 -0.09 -1.50 16 3 C -0.08 -0.62 6.03 30.11 0.18 -0.44 16 4 C -0.10 -0.98 5.14 30.66 0.16 -0.82 16 5 C -0.10 -1.22 2.42 -11.57 -0.03 -1.25 16 6 C 0.51 10.31 7.12 87.66 0.62 10.94 16 7 O -0.59 -17.97 15.60 -3.02 -0.05 -18.02 16 8 N -0.71 -11.27 4.25 -442.54 -1.88 -13.15 16 9 C 0.16 3.59 2.34 44.99 0.11 3.69 16 10 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 11 C -0.14 -3.65 9.33 71.98 0.67 -2.98 16 12 C 0.09 1.72 2.22 44.91 0.10 1.82 16 13 H 0.10 1.69 7.80 -2.39 -0.02 1.67 16 14 C -0.18 -3.04 9.00 71.98 0.65 -2.39 16 15 N -0.67 -19.89 5.11 -495.58 -2.53 -22.42 16 16 C 0.07 2.22 5.97 85.56 0.51 2.73 16 17 C 0.44 20.33 7.82 87.66 0.69 21.01 16 18 O -0.62 -34.57 15.78 -3.08 -0.05 -34.62 16 19 N -0.57 -28.91 5.29 -306.98 -1.62 -30.53 16 20 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 23 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 24 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C -0.09 -1.46 4.54 30.65 0.14 -1.33 16 29 C -0.08 -0.91 6.03 30.10 0.18 -0.73 16 30 H 0.10 0.92 7.92 -2.91 -0.02 0.90 16 31 H 0.10 0.97 7.92 -2.91 -0.02 0.95 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.53 7.89 -2.39 -0.02 0.51 16 34 H 0.09 0.51 7.44 -2.39 -0.02 0.50 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.41 3.61 7.73 -92.71 -0.72 2.90 16 38 H 0.06 1.85 7.61 -2.39 -0.02 1.83 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 42 H 0.08 1.02 7.44 -2.39 -0.02 1.00 16 43 H 0.06 1.06 7.45 -2.38 -0.02 1.04 16 44 H 0.34 11.23 8.17 -89.70 -0.73 10.50 16 45 H 0.07 1.89 7.43 -2.38 -0.02 1.88 16 46 H 0.11 3.00 8.06 -2.39 -0.02 2.98 16 47 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 51 H 0.07 0.79 7.89 -2.39 -0.02 0.77 16 52 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.54 417.24 1.04 -72.49 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -1.26 Total: 40.77 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.12 Total: 9.25 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -5.75 Total: -114.79 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.10 Total: -52.64 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.54 1.04 -72.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725113049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.725 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds