Wall clock time and date at job start Tue Mar 31 2020 20:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47269 * 240.00522 * 2 1 3 5 5 N 1.46499 * 109.47276 * 184.99913 * 4 2 1 6 6 C 1.46499 * 120.00136 * 269.99459 * 5 4 2 7 7 C 1.34784 * 119.99971 * 89.99654 * 5 4 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 5 4 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 5 4 10 10 C 1.50707 * 109.47011 * 180.02562 * 9 7 5 11 11 C 1.29442 * 117.96266 * 94.73224 * 10 9 7 12 12 C 1.50060 * 124.07582 * 180.23565 * 11 10 9 13 13 C 1.53026 * 110.20104 * 343.32343 * 12 11 10 14 14 C 1.53397 * 108.43873 * 49.24729 * 13 12 11 15 15 C 1.50070 * 117.95984 * 275.00425 * 10 9 7 16 16 N 1.46900 * 109.47272 * 119.99883 * 2 1 3 17 17 C 1.46892 * 111.00205 * 274.99937 * 16 2 1 18 18 C 1.50702 * 109.46988 * 180.02562 * 17 16 2 19 19 O 1.21287 * 120.00246 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00248 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00282 * 180.02562 * 20 18 17 22 22 H 1.07992 * 120.00041 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99911 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00008 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99814 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46963 * 90.00762 * 25 23 21 27 27 H 1.48497 * 109.47039 * 210.00207 * 25 23 21 28 28 H 1.48498 * 109.47311 * 330.00574 * 25 23 21 29 29 H 1.09009 * 109.47062 * 299.99577 * 1 2 3 30 30 H 1.08994 * 109.47262 * 59.99493 * 1 2 3 31 31 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47074 * 64.99488 * 4 2 1 33 33 H 1.09008 * 109.46412 * 304.99494 * 4 2 1 34 34 H 1.08996 * 109.47008 * 270.00543 * 6 5 4 35 35 H 1.08997 * 109.46865 * 30.00228 * 6 5 4 36 36 H 1.08998 * 109.47058 * 149.99741 * 6 5 4 37 37 H 1.09005 * 109.47403 * 300.00056 * 9 7 5 38 38 H 1.09002 * 109.47422 * 60.00295 * 9 7 5 39 39 H 1.08001 * 117.96336 * 0.47513 * 11 10 9 40 40 H 1.08999 * 109.48933 * 223.00137 * 12 11 10 41 41 H 1.09006 * 109.17622 * 103.44912 * 12 11 10 42 42 H 1.08997 * 109.64329 * 289.55630 * 13 12 11 43 43 H 1.09004 * 109.64379 * 168.92799 * 13 12 11 44 44 H 1.08994 * 109.64134 * 172.87828 * 14 13 12 45 45 H 1.09004 * 109.64257 * 52.24600 * 14 13 12 46 46 H 1.09007 * 109.35213 * 283.04852 * 15 10 9 47 47 H 1.08997 * 109.36178 * 42.76897 * 15 10 9 48 48 H 1.00902 * 111.00071 * 38.96074 * 16 2 1 49 49 H 1.08995 * 109.47744 * 299.99938 * 17 16 2 50 50 H 1.09000 * 109.47022 * 60.00294 * 17 16 2 51 51 H 0.97006 * 119.99797 * 359.97438 * 20 18 17 52 52 H 0.97000 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3851 -2.7741 -0.1349 9 6 5.5776 -2.0069 -0.5519 10 6 5.9616 -3.2897 0.1398 11 6 6.2084 -4.3256 -0.5961 12 6 6.5965 -5.6696 -0.0529 13 6 7.0546 -5.5395 1.4014 14 6 6.0069 -4.7234 2.1690 15 6 6.0280 -3.2882 1.6390 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2226 2.3468 18 6 2.5886 -0.5216 3.5556 19 8 2.8689 -1.6985 3.4699 20 7 2.7288 0.1204 4.7323 21 6 3.1897 -0.5564 5.8319 22 1 3.4401 -1.6041 5.7553 23 6 3.3348 0.1057 7.0449 24 7 3.0296 1.3805 7.1383 25 14 3.9621 -0.8167 8.5432 26 1 5.4431 -0.7224 8.5983 27 1 3.3820 -0.2177 9.7720 28 1 3.5600 -2.2432 8.4505 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 4.5423 0.0094 -2.8074 35 1 3.8090 1.1867 -1.6919 36 1 5.2721 0.2954 -1.2093 37 1 5.9827 -2.0049 -1.5639 38 1 5.9813 -1.1598 0.0028 39 1 6.1340 -4.2149 -1.6678 40 1 7.4079 -6.0833 -0.6517 41 1 5.7366 -6.3377 -0.1025 42 1 8.0165 -5.0281 1.4382 43 1 7.1458 -6.5302 1.8468 44 1 6.2479 -4.7251 3.2319 45 1 5.0189 -5.1569 2.0135 46 1 6.9475 -2.7982 1.9593 47 1 5.1713 -2.7451 2.0381 48 1 1.4496 -1.4980 1.4100 49 1 2.7588 1.0462 2.1183 50 1 1.0871 0.6162 2.5525 51 1 2.5043 1.0616 4.8011 52 1 3.1305 1.8426 7.9851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725474363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:07 Heat of formation + Delta-G solvation = -67.630676 kcal Electronic energy + Delta-G solvation = -30908.356713 eV Core-core repulsion = 26907.491909 eV Total energy + Delta-G solvation = -4000.864804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.84267 -38.37969 -37.96359 -36.49108 -34.73959 -33.78674 -32.67808 -31.22808 -30.70298 -30.41612 -27.97466 -27.02758 -26.18297 -25.15076 -23.82547 -22.96397 -21.59766 -20.71072 -19.29376 -18.87295 -17.80936 -17.34223 -16.69008 -16.28540 -15.80855 -15.45708 -15.30065 -14.88783 -14.59610 -14.42819 -14.11847 -13.83012 -13.75025 -13.51193 -13.30787 -13.04356 -12.95493 -12.72566 -12.51958 -12.33221 -12.29707 -12.06724 -12.03018 -11.92239 -11.77237 -11.61818 -11.48124 -11.39050 -11.21361 -10.99130 -10.86056 -10.48359 -10.35327 -10.15614 -10.13821 -9.95325 -9.43122 -9.38080 -8.51325 -8.47785 -8.22536 -7.89187 -7.77499 -6.35485 -3.75416 2.42205 3.13237 3.21616 3.29620 3.35597 3.36508 4.01033 4.17512 4.43302 4.78169 4.90736 4.93885 4.95826 5.08359 5.17189 5.18058 5.25042 5.28016 5.30614 5.36890 5.39606 5.42243 5.50716 5.54051 5.62789 5.70713 5.73328 5.75856 5.80955 5.83625 5.86366 5.91518 5.98297 6.01117 6.12731 6.15373 6.16442 6.26390 6.36839 6.46129 6.61840 6.71977 6.73763 6.89881 7.29038 7.41720 7.61241 7.69350 7.88682 8.14230 8.69118 8.70008 9.25727 9.62835 10.15736 10.82674 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.004198 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.475187 B = 6668.813894 C = 9397.571435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.073 0.927 4 C 0.132 3.868 5 N -0.614 5.614 6 C 0.082 3.918 7 C 0.528 3.472 8 O -0.502 6.502 9 C -0.107 4.107 10 C -0.080 4.080 11 C -0.165 4.165 12 C -0.082 4.082 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.084 4.084 16 N -0.647 5.647 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.571 6.571 20 N -0.569 5.569 21 C -0.294 4.294 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.905 5.905 25 Si 0.927 3.073 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.353 0.647 49 H 0.078 0.922 50 H 0.038 0.962 51 H 0.390 0.610 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -1.656 -19.500 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.091 0.909 4 C 0.008 3.992 5 N -0.349 5.349 6 C -0.061 4.061 7 C 0.315 3.685 8 O -0.375 6.375 9 C -0.147 4.147 10 C -0.080 4.080 11 C -0.183 4.183 12 C -0.119 4.119 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.121 4.121 16 N -0.280 5.280 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.454 6.454 20 N -0.206 5.206 21 C -0.424 4.424 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.547 5.547 25 Si 0.755 3.245 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.112 0.888 48 H 0.174 0.826 49 H 0.097 0.903 50 H 0.056 0.944 51 H 0.223 0.777 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.816 -2.761 -19.286 19.853 hybrid contribution -0.831 0.784 1.013 1.527 sum 2.985 -1.977 -18.273 18.621 Atomic orbital electron populations 1.22474 0.97255 1.02364 1.02040 1.22008 0.92290 0.98036 0.92340 0.90866 1.21389 0.80304 1.01630 0.95902 1.47538 1.05990 1.21414 1.59983 1.21692 0.95788 0.90910 0.97756 1.20188 0.89715 0.81380 0.77226 1.90701 1.64404 1.39377 1.42991 1.20866 0.93843 0.98681 1.01327 1.20377 0.98128 0.93732 0.95760 1.21708 1.03476 0.94634 0.98530 1.20336 1.00365 0.95238 0.95970 1.21621 0.98977 0.99915 0.95222 1.21508 0.99274 0.95298 0.99062 1.20386 1.02809 0.97671 0.91239 1.60097 1.57761 1.08346 1.01754 1.21683 0.99336 0.95715 0.91399 1.19857 0.84949 0.88343 0.84108 1.90561 1.54432 1.15940 1.84426 1.41871 1.58381 1.12390 1.07990 1.19679 1.39521 0.96368 0.86788 0.88031 1.25222 0.97896 0.95758 0.99144 1.69614 1.49155 1.08897 1.27036 0.85897 0.78793 0.79535 0.80314 1.20466 1.21029 1.19458 0.92387 0.92368 0.92197 0.91046 0.90138 0.93323 0.91570 0.91241 0.89582 0.88757 0.88794 0.91892 0.91327 0.92147 0.92236 0.91860 0.91510 0.91783 0.88844 0.82639 0.90345 0.94442 0.77688 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.07 0.81 2.89 -67.72 -0.20 0.61 16 3 H 0.07 0.87 7.80 -51.93 -0.40 0.46 16 4 C 0.13 1.51 5.20 -4.04 -0.02 1.49 16 5 N -0.61 -7.45 2.78 -181.58 -0.50 -7.95 16 6 C 0.08 0.69 10.24 59.85 0.61 1.30 16 7 C 0.53 8.02 7.01 -10.98 -0.08 7.94 16 8 O -0.50 -9.70 14.74 5.56 0.08 -9.62 16 9 C -0.11 -1.38 4.26 -29.03 -0.12 -1.51 16 10 C -0.08 -1.16 4.33 -100.94 -0.44 -1.60 16 11 C -0.17 -2.20 9.37 -35.90 -0.34 -2.54 16 12 C -0.08 -0.99 6.11 -28.18 -0.17 -1.16 16 13 C -0.12 -1.50 6.01 -26.51 -0.16 -1.66 16 14 C -0.11 -1.77 6.01 -26.52 -0.16 -1.93 16 15 C -0.08 -1.40 5.80 -28.18 -0.16 -1.56 16 16 N -0.65 -10.93 4.14 -108.00 -0.45 -11.38 16 17 C 0.05 0.94 5.97 -4.98 -0.03 0.91 16 18 C 0.44 10.65 7.82 -10.98 -0.09 10.56 16 19 O -0.57 -15.76 15.78 5.55 0.09 -15.68 16 20 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 21 C -0.29 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 24 N -0.91 -25.00 13.05 55.50 0.72 -24.27 16 25 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.67 7.45 -51.92 -0.39 0.28 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 32 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.08 1.07 7.43 -51.92 -0.39 0.68 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.07 0.56 6.44 -51.93 -0.33 0.23 16 37 H 0.09 0.87 7.76 -51.93 -0.40 0.47 16 38 H 0.09 1.17 7.37 -51.93 -0.38 0.78 16 39 H 0.09 1.12 7.74 -52.49 -0.41 0.71 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 1.15 8.12 -51.93 -0.42 0.72 16 46 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 47 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 48 H 0.35 6.74 8.17 -39.29 -0.32 6.42 16 49 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 50 H 0.04 0.63 7.44 -51.93 -0.39 0.25 16 51 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 52 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 416.70 15.07 6.28 6.28 Total: -1.00 -33.29 416.70 -9.26 -42.54 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -9.15 Total: 17.10 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.25 Total: 1.24 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.28 Total: -58.31 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.17 Total: -25.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.29 -9.26 -42.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725474363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.088 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds