Wall clock time and date at job start Tue Mar 31 2020 20:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47258 * 2 1 4 4 C 1.53005 * 109.47107 * 239.99955 * 2 1 3 5 5 N 1.46499 * 109.47061 * 184.99800 * 4 2 1 6 6 C 1.46502 * 120.00271 * 269.99998 * 5 4 2 7 7 C 1.34773 * 119.99987 * 89.99775 * 5 4 2 8 8 O 1.21282 * 120.00222 * 0.02562 * 7 5 4 9 9 C 1.50700 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.53004 * 109.47345 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.35591 * 305.28272 * 10 9 7 12 12 C 1.50069 * 109.35550 * 64.99981 * 10 9 7 13 13 C 1.29445 * 124.07534 * 137.20841 * 12 10 9 14 14 C 1.50068 * 124.07415 * 359.50170 * 13 12 10 15 15 C 1.53025 * 110.03748 * 17.22709 * 14 13 12 16 16 C 1.53022 * 109.25177 * 185.62343 * 10 9 7 17 17 N 1.46898 * 109.47301 * 119.99757 * 2 1 3 18 18 C 1.46896 * 111.00175 * 274.99942 * 17 2 1 19 19 C 1.50696 * 109.47362 * 179.97438 * 18 17 2 20 20 O 1.21292 * 119.99944 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00303 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00154 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99599 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99794 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00298 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99968 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47104 * 59.99778 * 26 24 22 28 28 H 1.48499 * 109.47380 * 180.02562 * 26 24 22 29 29 H 1.48512 * 109.46962 * 300.00303 * 26 24 22 30 30 H 1.08993 * 109.46871 * 300.00241 * 1 2 3 31 31 H 1.09007 * 109.47131 * 60.00032 * 1 2 3 32 32 H 1.08997 * 109.46586 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47040 * 64.99980 * 4 2 1 34 34 H 1.08993 * 109.47187 * 304.99709 * 4 2 1 35 35 H 1.09004 * 109.47127 * 270.00124 * 6 5 4 36 36 H 1.09000 * 109.47106 * 30.00237 * 6 5 4 37 37 H 1.09004 * 109.47610 * 149.99725 * 6 5 4 38 38 H 1.08998 * 109.47091 * 60.00585 * 9 7 5 39 39 H 1.08999 * 109.47372 * 300.00030 * 9 7 5 40 40 H 1.07997 * 117.96356 * 317.17865 * 12 10 9 41 41 H 1.08000 * 117.96430 * 179.53407 * 13 12 10 42 42 H 1.09002 * 109.35724 * 137.36675 * 14 13 12 43 43 H 1.08998 * 109.35998 * 257.09316 * 14 13 12 44 44 H 1.09002 * 109.64265 * 70.17614 * 15 14 13 45 45 H 1.08994 * 109.64420 * 190.81142 * 15 14 13 46 46 H 1.09002 * 109.64000 * 310.11202 * 16 10 9 47 47 H 1.08999 * 109.64045 * 70.52491 * 16 10 9 48 48 H 1.00899 * 110.99976 * 151.04967 * 17 2 1 49 49 H 1.08998 * 109.47507 * 300.00443 * 18 17 2 50 50 H 1.09002 * 109.47187 * 59.99893 * 18 17 2 51 51 H 0.97005 * 119.99771 * 0.02562 * 21 19 18 52 52 H 0.97000 * 119.99973 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3852 -2.7767 -0.1395 9 6 5.5777 -2.0069 -0.5517 10 6 5.9675 -3.3092 0.1505 11 1 5.4845 -3.3518 1.1267 12 6 5.5167 -4.4758 -0.6789 13 6 6.2329 -5.5322 -0.8945 14 6 7.6184 -5.7334 -0.3540 15 6 7.8801 -4.7568 0.7946 16 6 7.4862 -3.3484 0.3339 17 7 2.0197 -0.6924 1.1994 18 6 2.0825 0.2227 2.3468 19 6 2.5874 -0.5217 3.5560 20 8 2.8678 -1.6986 3.4702 21 7 2.7284 0.1206 4.7324 22 6 3.1882 -0.5564 5.8323 23 1 3.4379 -1.6044 5.7559 24 6 3.3330 0.1057 7.0453 25 7 3.0288 1.3807 7.1384 26 14 3.9602 -0.8166 8.5438 27 1 5.3165 -1.3524 8.2633 28 1 4.0229 0.1083 9.7039 29 1 3.0392 -1.9392 8.8554 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6055 -1.7198 -1.2952 35 1 4.5425 0.0093 -2.8074 36 1 3.8091 1.1866 -1.6919 37 1 5.2723 0.2954 -1.2093 38 1 5.9813 -1.1598 0.0029 39 1 5.9827 -2.0050 -1.5637 40 1 4.5333 -4.4314 -1.1231 41 1 5.8072 -6.3175 -1.5015 42 1 7.7190 -6.7556 0.0109 43 1 8.3447 -5.5601 -1.1481 44 1 7.2826 -5.0412 1.6607 45 1 8.9384 -4.7721 1.0546 46 1 7.9756 -3.1209 -0.6131 47 1 7.7836 -2.6167 1.0850 48 1 2.9174 -1.1204 1.0287 49 1 2.7588 1.0463 2.1182 50 1 1.0871 0.6164 2.5525 51 1 2.5045 1.0620 4.8010 52 1 3.1295 1.8428 7.9853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725494124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:08 Heat of formation + Delta-G solvation = -62.856120 kcal Electronic energy + Delta-G solvation = -30580.213972 eV Core-core repulsion = 26579.556208 eV Total energy + Delta-G solvation = -4000.657764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43464 -38.57642 -38.04715 -36.53926 -34.91978 -33.79688 -32.70587 -31.24952 -30.97326 -30.79306 -28.06980 -27.29472 -26.28993 -25.35872 -23.87814 -22.39915 -22.06352 -20.38274 -19.34261 -18.96031 -17.94659 -17.80712 -17.04813 -16.56112 -16.20225 -15.95097 -15.55683 -15.11093 -14.73623 -14.39368 -14.24571 -13.98283 -13.90318 -13.75879 -13.34996 -13.07483 -12.84718 -12.76184 -12.66865 -12.58178 -12.41035 -12.25614 -12.10112 -11.91673 -11.77277 -11.65461 -11.48551 -11.43650 -11.26209 -11.03095 -10.86196 -10.80469 -10.51280 -10.39505 -10.14882 -10.11756 -9.55118 -9.42634 -8.90837 -8.70892 -8.30038 -7.90761 -7.84257 -6.35151 -3.75376 2.40728 2.70116 2.91362 3.24567 3.29209 3.34432 4.00343 4.17270 4.37981 4.49326 4.69264 4.70465 4.85364 4.88145 4.91007 5.08812 5.09814 5.20273 5.22627 5.29619 5.30978 5.35072 5.37105 5.43143 5.46131 5.51270 5.54343 5.63118 5.64728 5.75927 5.80443 5.82772 5.86873 5.88311 5.96786 6.07766 6.10179 6.13229 6.28567 6.32746 6.38457 6.41611 6.50560 6.78499 7.04769 7.27800 7.43519 7.61377 7.90946 8.14195 8.25496 8.70088 9.25522 9.62474 10.15556 10.82899 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.003751 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.850077 B = 7462.093346 C =10163.312048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.038 0.962 4 C 0.113 3.887 5 N -0.629 5.629 6 C 0.078 3.922 7 C 0.503 3.497 8 O -0.499 6.499 9 C -0.130 4.130 10 C -0.048 4.048 11 H 0.098 0.902 12 C -0.127 4.127 13 C -0.175 4.175 14 C -0.087 4.087 15 C -0.121 4.121 16 C -0.114 4.114 17 N -0.658 5.658 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.574 6.574 21 N -0.567 5.567 22 C -0.296 4.296 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.905 5.905 26 Si 0.929 3.071 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.354 0.646 49 H 0.036 0.964 50 H 0.083 0.917 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -1.146 -21.349 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.010 4.010 5 N -0.365 5.365 6 C -0.066 4.066 7 C 0.291 3.709 8 O -0.372 6.372 9 C -0.170 4.170 10 C -0.067 4.067 11 H 0.116 0.884 12 C -0.145 4.145 13 C -0.193 4.193 14 C -0.124 4.124 15 C -0.159 4.159 16 C -0.152 4.152 17 N -0.296 5.296 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.426 4.426 23 H 0.119 0.881 24 C -0.180 4.180 25 N -0.547 5.547 26 Si 0.756 3.244 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.179 0.821 49 H 0.054 0.946 50 H 0.101 0.899 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.362 -2.582 -20.825 21.659 hybrid contribution 0.771 1.029 0.591 1.415 sum 6.133 -1.553 -20.235 21.201 Atomic orbital electron populations 1.21744 0.94163 1.02668 1.01050 1.21922 0.96319 0.95621 0.90624 0.94404 1.21718 0.79294 1.02900 0.97079 1.48000 1.06847 1.21796 1.59872 1.21799 0.95688 0.90687 0.98413 1.20822 0.91057 0.81448 0.77541 1.90832 1.64511 1.38222 1.43604 1.21733 0.92367 1.00085 1.02781 1.19903 0.95482 0.91428 0.99864 0.88431 1.22158 0.99365 0.94832 0.98116 1.21974 0.96586 0.98352 1.02394 1.20413 0.94888 0.99463 0.97647 1.21586 1.01057 0.94839 0.98408 1.21635 0.94807 0.97402 1.01330 1.60189 1.36214 1.31056 1.02157 1.21730 1.00875 0.93864 0.91867 1.19857 0.84789 0.88286 0.84427 1.90560 1.54551 1.15928 1.84627 1.41856 1.58291 1.12339 1.07974 1.19654 1.39704 0.96384 0.86861 0.88056 1.25228 0.97843 0.95768 0.99129 1.69607 1.49059 1.08868 1.27133 0.85941 0.79422 0.78857 0.80137 1.19965 1.21020 1.19906 0.92340 0.92953 0.91674 0.90228 0.88918 0.92571 0.91118 0.90912 0.88782 0.89145 0.87328 0.88421 0.91509 0.91466 0.91318 0.91822 0.91931 0.91404 0.82143 0.94645 0.89866 0.77605 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.42 37.16 0.35 -1.33 16 2 C 0.07 0.90 2.95 -67.71 -0.20 0.70 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 4 C 0.11 1.30 5.20 -4.04 -0.02 1.28 16 5 N -0.63 -7.12 2.66 -181.57 -0.48 -7.60 16 6 C 0.08 0.57 10.24 59.85 0.61 1.18 16 7 C 0.50 7.01 5.68 -10.99 -0.06 6.95 16 8 O -0.50 -9.12 12.46 5.56 0.07 -9.05 16 9 C -0.13 -1.45 3.68 -27.88 -0.10 -1.55 16 10 C -0.05 -0.63 2.11 -92.06 -0.19 -0.82 16 11 H 0.10 1.64 7.94 -51.93 -0.41 1.23 16 12 C -0.13 -1.67 8.42 -35.90 -0.30 -1.98 16 13 C -0.17 -2.04 9.80 -35.90 -0.35 -2.40 16 14 C -0.09 -0.87 6.12 -28.18 -0.17 -1.04 16 15 C -0.12 -1.29 6.00 -26.55 -0.16 -1.45 16 16 C -0.11 -1.22 5.30 -26.55 -0.14 -1.36 16 17 N -0.66 -12.20 5.82 -107.99 -0.63 -12.82 16 18 C 0.05 0.97 5.96 -4.98 -0.03 0.94 16 19 C 0.44 11.15 7.82 -10.99 -0.09 11.07 16 20 O -0.57 -16.73 15.78 5.55 0.09 -16.65 16 21 N -0.57 -15.02 5.29 -10.96 -0.06 -15.08 16 22 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 23 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.19 13.05 55.50 0.72 -24.46 16 26 Si 0.93 21.64 29.55 -169.99 -5.02 16.61 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 30 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.09 1.25 7.42 -51.93 -0.39 0.87 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 38 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 39 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.11 1.59 6.53 -52.49 -0.34 1.25 16 41 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.35 7.01 4.17 -39.29 -0.16 6.84 16 49 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 50 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 51 H 0.39 9.88 7.90 -40.82 -0.32 9.56 16 52 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -34.86 409.34 -9.18 -44.04 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -8.94 Total: 16.87 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.10 Total: 1.98 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.45 Total: -59.96 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.16 Total: -25.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.86 -9.18 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725494124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.818 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds