Wall clock time and date at job start Tue Mar 31 2020 20:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47258 * 2 1 4 4 C 1.53005 * 109.47107 * 239.99955 * 2 1 3 5 5 N 1.46499 * 109.47061 * 184.99800 * 4 2 1 6 6 C 1.46502 * 120.00271 * 269.99998 * 5 4 2 7 7 C 1.34773 * 119.99987 * 89.99775 * 5 4 2 8 8 O 1.21282 * 120.00222 * 0.02562 * 7 5 4 9 9 C 1.50700 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.53004 * 109.47345 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.35591 * 305.28272 * 10 9 7 12 12 C 1.50069 * 109.35550 * 64.99981 * 10 9 7 13 13 C 1.29445 * 124.07534 * 137.20841 * 12 10 9 14 14 C 1.50068 * 124.07415 * 359.50170 * 13 12 10 15 15 C 1.53025 * 110.03748 * 17.22709 * 14 13 12 16 16 C 1.53022 * 109.25177 * 185.62343 * 10 9 7 17 17 N 1.46898 * 109.47301 * 119.99757 * 2 1 3 18 18 C 1.46896 * 111.00175 * 274.99942 * 17 2 1 19 19 C 1.50696 * 109.47362 * 179.97438 * 18 17 2 20 20 O 1.21292 * 119.99944 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00303 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00154 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99599 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99794 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00298 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99968 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47104 * 59.99778 * 26 24 22 28 28 H 1.48499 * 109.47380 * 180.02562 * 26 24 22 29 29 H 1.48512 * 109.46962 * 300.00303 * 26 24 22 30 30 H 1.08993 * 109.46871 * 300.00241 * 1 2 3 31 31 H 1.09007 * 109.47131 * 60.00032 * 1 2 3 32 32 H 1.08997 * 109.46586 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47040 * 64.99980 * 4 2 1 34 34 H 1.08993 * 109.47187 * 304.99709 * 4 2 1 35 35 H 1.09004 * 109.47127 * 270.00124 * 6 5 4 36 36 H 1.09000 * 109.47106 * 30.00237 * 6 5 4 37 37 H 1.09004 * 109.47610 * 149.99725 * 6 5 4 38 38 H 1.08998 * 109.47091 * 60.00585 * 9 7 5 39 39 H 1.08999 * 109.47372 * 300.00030 * 9 7 5 40 40 H 1.07997 * 117.96356 * 317.17865 * 12 10 9 41 41 H 1.08000 * 117.96430 * 179.53407 * 13 12 10 42 42 H 1.09002 * 109.35724 * 137.36675 * 14 13 12 43 43 H 1.08998 * 109.35998 * 257.09316 * 14 13 12 44 44 H 1.09002 * 109.64265 * 70.17614 * 15 14 13 45 45 H 1.08994 * 109.64420 * 190.81142 * 15 14 13 46 46 H 1.09002 * 109.64000 * 310.11202 * 16 10 9 47 47 H 1.08999 * 109.64045 * 70.52491 * 16 10 9 48 48 H 1.00899 * 110.99976 * 151.04967 * 17 2 1 49 49 H 1.08998 * 109.47507 * 300.00443 * 18 17 2 50 50 H 1.09002 * 109.47187 * 59.99893 * 18 17 2 51 51 H 0.97005 * 119.99771 * 0.02562 * 21 19 18 52 52 H 0.97000 * 119.99973 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3852 -2.7767 -0.1395 9 6 5.5777 -2.0069 -0.5517 10 6 5.9675 -3.3092 0.1505 11 1 5.4845 -3.3518 1.1267 12 6 5.5167 -4.4758 -0.6789 13 6 6.2329 -5.5322 -0.8945 14 6 7.6184 -5.7334 -0.3540 15 6 7.8801 -4.7568 0.7946 16 6 7.4862 -3.3484 0.3339 17 7 2.0197 -0.6924 1.1994 18 6 2.0825 0.2227 2.3468 19 6 2.5874 -0.5217 3.5560 20 8 2.8678 -1.6986 3.4702 21 7 2.7284 0.1206 4.7324 22 6 3.1882 -0.5564 5.8323 23 1 3.4379 -1.6044 5.7559 24 6 3.3330 0.1057 7.0453 25 7 3.0288 1.3807 7.1384 26 14 3.9602 -0.8166 8.5438 27 1 5.3165 -1.3524 8.2633 28 1 4.0229 0.1083 9.7039 29 1 3.0392 -1.9392 8.8554 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6055 -1.7198 -1.2952 35 1 4.5425 0.0093 -2.8074 36 1 3.8091 1.1866 -1.6919 37 1 5.2723 0.2954 -1.2093 38 1 5.9813 -1.1598 0.0029 39 1 5.9827 -2.0050 -1.5637 40 1 4.5333 -4.4314 -1.1231 41 1 5.8072 -6.3175 -1.5015 42 1 7.7190 -6.7556 0.0109 43 1 8.3447 -5.5601 -1.1481 44 1 7.2826 -5.0412 1.6607 45 1 8.9384 -4.7721 1.0546 46 1 7.9756 -3.1209 -0.6131 47 1 7.7836 -2.6167 1.0850 48 1 2.9174 -1.1204 1.0287 49 1 2.7588 1.0463 2.1182 50 1 1.0871 0.6164 2.5525 51 1 2.5045 1.0620 4.8010 52 1 3.1295 1.8428 7.9853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725494124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:07 Heat of formation + Delta-G solvation = -86.839251 kcal Electronic energy + Delta-G solvation = -30581.253959 eV Core-core repulsion = 26579.556208 eV Total energy + Delta-G solvation = -4001.697751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45429 -40.16903 -39.35642 -37.75603 -36.16950 -35.76640 -33.67822 -33.30266 -32.14908 -31.89402 -28.97235 -28.21285 -27.89018 -26.34442 -25.67514 -23.31235 -23.00108 -21.47530 -21.17012 -20.10287 -19.88376 -18.88375 -18.05026 -17.99855 -17.30873 -17.02551 -16.90232 -16.48377 -16.38545 -16.07277 -15.57546 -15.28561 -15.07635 -14.88868 -14.56060 -14.27959 -13.99508 -13.75156 -13.70194 -13.55199 -13.49016 -13.41608 -13.28431 -13.18582 -13.03175 -12.92368 -12.87308 -12.62816 -12.47525 -12.44802 -12.31520 -12.13017 -11.96730 -11.73704 -11.53479 -11.41464 -11.05440 -10.59969 -10.36466 -10.04081 -9.87806 -9.61160 -9.25432 -8.48780 -5.97770 1.37153 1.38741 1.42157 1.50148 1.68667 2.01738 2.05817 2.27471 2.94009 3.17575 3.49161 3.58060 3.78552 3.82287 3.91699 3.97653 4.18478 4.22057 4.26078 4.29995 4.34639 4.39534 4.44716 4.46279 4.49622 4.53593 4.56842 4.65721 4.70650 4.76865 4.79322 4.87920 4.88695 4.93226 4.97433 5.05029 5.06741 5.08202 5.21298 5.36484 5.38225 5.40570 5.47617 5.60329 5.81352 5.90846 6.08293 6.17402 6.37307 6.51377 6.58643 7.10382 7.26629 7.52678 8.09985 8.68600 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.003751 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.850077 B = 7462.093346 C =10163.312048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.064 3.936 3 H 0.059 0.941 4 C 0.115 3.885 5 N -0.625 5.625 6 C 0.069 3.931 7 C 0.493 3.507 8 O -0.556 6.556 9 C -0.123 4.123 10 C -0.046 4.046 11 H 0.042 0.958 12 C -0.149 4.149 13 C -0.164 4.164 14 C -0.086 4.086 15 C -0.125 4.125 16 C -0.109 4.109 17 N -0.683 5.683 18 C 0.065 3.935 19 C 0.434 3.566 20 O -0.621 6.621 21 N -0.571 5.571 22 C -0.336 4.336 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.266 1.266 29 H -0.275 1.275 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.345 0.655 49 H 0.060 0.940 50 H 0.100 0.900 51 H 0.396 0.604 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.561 0.640 -23.046 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.076 0.924 4 C -0.008 4.008 5 N -0.360 5.360 6 C -0.072 4.072 7 C 0.283 3.717 8 O -0.433 6.433 9 C -0.162 4.162 10 C -0.064 4.064 11 H 0.060 0.940 12 C -0.167 4.167 13 C -0.182 4.182 14 C -0.122 4.122 15 C -0.163 4.163 16 C -0.147 4.147 17 N -0.322 5.322 18 C -0.068 4.068 19 C 0.221 3.779 20 O -0.507 6.507 21 N -0.208 5.208 22 C -0.465 4.465 23 H 0.092 0.908 24 C -0.210 4.210 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.196 1.196 28 H -0.190 1.190 29 H -0.200 1.200 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.168 0.832 49 H 0.078 0.922 50 H 0.118 0.882 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.796 -0.714 -22.556 23.568 hybrid contribution 0.276 0.474 1.080 1.211 sum 7.073 -0.241 -21.476 22.612 Atomic orbital electron populations 1.21736 0.93264 1.01814 1.02426 1.22117 0.96979 0.96278 0.89241 0.92352 1.21736 0.79479 1.01816 0.97767 1.48108 1.07198 1.21842 1.58821 1.22113 0.95552 0.89965 0.99620 1.21349 0.92043 0.81424 0.76903 1.90806 1.65789 1.40543 1.46182 1.21749 0.90712 0.99308 1.04471 1.19789 0.96758 0.92679 0.97221 0.94009 1.22038 0.98920 0.96122 0.99628 1.22260 0.97371 0.97418 1.01164 1.20477 0.94066 0.99740 0.97948 1.21626 1.01795 0.95063 0.97786 1.21634 0.92968 0.97491 1.02591 1.60203 1.36031 1.32079 1.03876 1.21582 1.01795 0.93669 0.89737 1.20920 0.83374 0.88036 0.85548 1.90534 1.56293 1.18301 1.85536 1.41894 1.58413 1.12452 1.08084 1.19598 1.42390 0.95830 0.88723 0.90816 1.26013 0.97125 0.96635 1.01185 1.69661 1.48454 1.09626 1.28242 0.85017 0.78722 0.77864 0.76886 1.19612 1.18979 1.19994 0.93248 0.89218 0.93668 0.85929 0.91750 0.90137 0.89510 0.90185 0.87714 0.85847 0.89606 0.87547 0.90543 0.88927 0.94116 0.89698 0.89245 0.91605 0.83151 0.92182 0.88206 0.77000 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.42 71.98 0.68 -2.41 16 2 C 0.06 1.64 2.95 44.92 0.13 1.77 16 3 H 0.06 1.28 7.80 -2.39 -0.02 1.26 16 4 C 0.12 2.50 5.20 86.38 0.45 2.95 16 5 N -0.63 -13.42 2.66 -846.74 -2.25 -15.67 16 6 C 0.07 0.80 10.24 127.77 1.31 2.10 16 7 C 0.49 14.22 5.68 87.66 0.50 14.72 16 8 O -0.56 -22.13 12.46 -3.04 -0.04 -22.16 16 9 C -0.12 -2.74 3.68 29.85 0.11 -2.63 16 10 C -0.05 -1.26 2.11 -11.73 -0.02 -1.29 16 11 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 12 C -0.15 -4.16 8.42 27.04 0.23 -3.94 16 13 C -0.16 -3.83 9.80 27.04 0.27 -3.56 16 14 C -0.09 -1.59 6.12 29.66 0.18 -1.40 16 15 C -0.13 -2.62 6.00 30.71 0.18 -2.44 16 16 C -0.11 -2.30 5.30 30.71 0.16 -2.14 16 17 N -0.68 -25.82 5.82 -495.59 -2.88 -28.70 16 18 C 0.06 2.53 5.96 85.56 0.51 3.04 16 19 C 0.43 22.80 7.82 87.66 0.69 23.48 16 20 O -0.62 -38.48 15.78 -3.07 -0.05 -38.53 16 21 N -0.57 -31.18 5.29 -306.98 -1.62 -32.80 16 22 C -0.34 -20.09 9.68 84.04 0.81 -19.27 16 23 H 0.07 4.74 7.16 -2.91 -0.02 4.72 16 24 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 25 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 26 Si 0.99 44.42 29.55 68.60 2.03 46.44 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 31 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.06 1.79 7.42 -2.39 -0.02 1.78 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.76 8.07 -2.39 -0.02 0.74 16 37 H 0.08 0.83 6.44 -2.39 -0.02 0.81 16 38 H 0.10 2.07 7.40 -2.39 -0.02 2.05 16 39 H 0.12 1.89 8.11 -2.39 -0.02 1.87 16 40 H 0.09 2.76 6.53 -2.91 -0.02 2.75 16 41 H 0.11 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.34 14.23 4.17 -89.69 -0.37 13.86 16 49 H 0.06 2.05 8.05 -2.39 -0.02 2.03 16 50 H 0.10 3.56 7.44 -2.39 -0.02 3.54 16 51 H 0.40 20.36 7.90 -92.70 -0.73 19.63 16 52 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -81.98 409.34 1.92 -80.07 By element: Atomic # 1 Polarization: 53.14 SS G_CDS: -0.20 Total: 52.94 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.65 Total: 8.93 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -6.48 Total: -127.68 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -0.09 Total: -60.70 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -81.98 1.92 -80.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725494124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.774 kcal (2) G-P(sol) polarization free energy of solvation -81.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds