Wall clock time and date at job start Tue Mar 31 2020 20:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47248 * 2 1 4 4 C 1.53003 * 109.47300 * 119.99418 * 2 1 3 5 5 N 1.46492 * 109.47561 * 175.00118 * 4 2 1 6 6 C 1.46502 * 120.00246 * 270.00163 * 5 4 2 7 7 C 1.34775 * 120.00188 * 90.00130 * 5 4 2 8 8 O 1.21283 * 120.00000 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00245 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47295 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.35948 * 55.26854 * 10 9 7 12 12 C 1.50065 * 109.48230 * 295.83059 * 10 9 7 13 13 C 1.29443 * 124.07980 * 223.00478 * 12 10 9 14 14 C 1.50070 * 124.07366 * 359.94620 * 13 12 10 15 15 C 1.53027 * 110.14693 * 343.13269 * 14 13 12 16 16 C 1.53022 * 109.35935 * 175.00086 * 10 9 7 17 17 N 1.46894 * 109.47658 * 239.99670 * 2 1 3 18 18 C 1.46901 * 111.00371 * 84.99643 * 17 2 1 19 19 C 1.50693 * 109.47478 * 180.02562 * 18 17 2 20 20 O 1.21292 * 120.00166 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99968 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99922 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99769 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99831 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99710 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99961 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47261 * 89.99886 * 26 24 22 28 28 H 1.48499 * 109.46662 * 210.00093 * 26 24 22 29 29 H 1.48494 * 109.47110 * 329.99516 * 26 24 22 30 30 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47370 * 300.00304 * 1 2 3 32 32 H 1.09001 * 109.46844 * 60.00445 * 1 2 3 33 33 H 1.09004 * 109.46785 * 54.99865 * 4 2 1 34 34 H 1.09001 * 109.47075 * 295.00746 * 4 2 1 35 35 H 1.08993 * 109.47530 * 270.00280 * 6 5 4 36 36 H 1.09006 * 109.46973 * 30.00130 * 6 5 4 37 37 H 1.09004 * 109.47442 * 149.99653 * 6 5 4 38 38 H 1.08997 * 109.47465 * 59.99576 * 9 7 5 39 39 H 1.09007 * 109.46629 * 299.99702 * 9 7 5 40 40 H 1.08004 * 117.96441 * 42.76070 * 12 10 9 41 41 H 1.08002 * 117.96781 * 180.23731 * 13 12 10 42 42 H 1.09000 * 109.35664 * 103.33988 * 14 13 12 43 43 H 1.08997 * 109.35897 * 223.06676 * 14 13 12 44 44 H 1.08997 * 109.64512 * 169.11725 * 15 14 13 45 45 H 1.09001 * 109.64307 * 289.75441 * 15 14 13 46 46 H 1.08993 * 109.64759 * 49.95222 * 16 10 9 47 47 H 1.09000 * 109.81311 * 289.42586 * 16 10 9 48 48 H 1.00904 * 111.00064 * 321.04620 * 17 2 1 49 49 H 1.09003 * 109.46988 * 300.01153 * 18 17 2 50 50 H 1.09000 * 109.46507 * 60.00492 * 18 17 2 51 51 H 0.97003 * 120.00143 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99523 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1141 2.2371 9 6 5.7694 0.0415 1.6549 10 6 6.3962 1.2700 2.3173 11 1 6.0110 1.3693 3.3322 12 6 6.0371 2.4987 1.5343 13 6 6.8705 3.4478 1.2514 14 6 8.3122 3.4526 1.6678 15 6 8.5405 2.4359 2.7885 16 6 7.9162 1.1000 2.3659 17 7 2.0197 -0.6925 -1.1993 18 6 2.0825 0.2224 -2.3469 19 6 2.5875 -0.5220 -3.5559 20 8 2.8671 -1.6991 -3.4702 21 7 2.7274 0.1200 -4.7326 22 6 3.1863 -0.5575 -5.8327 23 1 3.4353 -1.6056 -5.7564 24 6 3.3311 0.1045 -7.0458 25 7 3.7715 -0.5447 -8.1001 26 14 2.9011 1.9176 -7.1776 27 1 4.1027 2.7348 -6.8717 28 1 2.4364 2.2171 -8.5558 29 1 1.8224 2.2420 -6.2101 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7197 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 4.2822 -2.7687 1.3099 36 1 3.4757 -2.3722 -0.2265 37 1 5.0852 -1.7020 0.1327 38 1 6.0880 -0.0128 0.6140 39 1 6.0906 -0.8579 2.1806 40 1 5.0208 2.5954 1.1816 41 1 6.5045 4.2909 0.6841 42 1 8.9363 3.1938 0.8125 43 1 8.5820 4.4467 2.0243 44 1 9.6101 2.3049 2.9521 45 1 8.0669 2.7881 3.7049 46 1 8.2852 0.8187 1.3797 47 1 8.1786 0.3279 3.0892 48 1 1.4496 -1.4980 -1.4099 49 1 1.0871 0.6162 -2.5525 50 1 2.7589 1.0460 -2.1182 51 1 2.5034 1.0613 -4.8013 52 1 3.8722 -0.0826 -8.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725494125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:11 Heat of formation + Delta-G solvation = -63.594474 kcal Electronic energy + Delta-G solvation = -30099.518064 eV Core-core repulsion = 26098.828283 eV Total energy + Delta-G solvation = -4000.689781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.22702 -38.72546 -38.29917 -36.84123 -34.84637 -33.94799 -32.81765 -31.70821 -31.09030 -30.97947 -28.08069 -27.02127 -26.53499 -25.29734 -23.72520 -22.51698 -22.18877 -20.96579 -19.42829 -18.98999 -18.34781 -18.02989 -17.01757 -16.29419 -16.09444 -15.94193 -15.57027 -15.26481 -14.84908 -14.72536 -14.37284 -14.15500 -13.97725 -13.64805 -13.22208 -13.13285 -12.99102 -12.84695 -12.66015 -12.64030 -12.39488 -12.32372 -12.29316 -12.21016 -12.10272 -11.85137 -11.79899 -11.56684 -11.38526 -11.16811 -11.02930 -10.94871 -10.65408 -10.60807 -10.22754 -9.99548 -9.59000 -9.58454 -8.99280 -8.77984 -8.47029 -8.20102 -8.03451 -6.33083 -3.84365 2.33289 2.71070 3.01470 3.06193 3.11415 3.14167 3.72652 4.07759 4.12094 4.44952 4.57913 4.61877 4.78129 4.84835 4.87381 5.03482 5.03758 5.14822 5.18765 5.24236 5.26530 5.31842 5.38459 5.40967 5.45533 5.53656 5.55746 5.60953 5.61537 5.63656 5.67339 5.74246 5.75421 5.78881 5.83574 5.89041 5.93930 5.97138 6.04103 6.16281 6.19446 6.24571 6.58804 6.71426 6.97558 7.08579 7.49309 7.56431 7.59077 8.12536 8.26921 8.57870 8.92974 9.40862 9.80765 10.80023 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009066 B = 0.003139 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.884781 B = 8917.078197 C =10738.738945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.065 3.935 3 H 0.080 0.920 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.083 3.917 7 C 0.513 3.487 8 O -0.550 6.550 9 C -0.133 4.133 10 C -0.041 4.041 11 H 0.084 0.916 12 C -0.133 4.133 13 C -0.171 4.171 14 C -0.090 4.090 15 C -0.119 4.119 16 C -0.117 4.117 17 N -0.658 5.658 18 C 0.049 3.951 19 C 0.452 3.548 20 O -0.566 6.566 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.348 0.652 49 H 0.043 0.957 50 H 0.083 0.917 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 4.365 22.422 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.098 0.902 4 C 0.006 3.994 5 N -0.326 5.326 6 C -0.060 4.060 7 C 0.302 3.698 8 O -0.428 6.428 9 C -0.172 4.172 10 C -0.060 4.060 11 H 0.102 0.898 12 C -0.151 4.151 13 C -0.190 4.190 14 C -0.127 4.127 15 C -0.156 4.156 16 C -0.155 4.155 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.237 3.763 20 O -0.448 6.448 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.705 3.295 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.168 0.832 49 H 0.061 0.939 50 H 0.101 0.899 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.243 4.123 22.662 23.261 hybrid contribution -1.400 1.596 -0.844 2.285 sum 1.843 5.719 21.818 22.630 Atomic orbital electron populations 1.22455 0.96913 1.02305 1.02399 1.22036 0.92506 0.98851 0.91288 0.90186 1.21438 0.79939 1.00807 0.97185 1.47590 1.06136 1.21738 1.57176 1.21847 0.99713 0.86725 0.97698 1.20655 0.89597 0.82035 0.77533 1.90654 1.75315 1.31290 1.45580 1.21729 0.92102 0.99806 1.03607 1.19814 0.94508 0.92140 0.99497 0.89764 1.22175 0.99742 0.94809 0.98333 1.22007 0.95380 0.99418 1.02149 1.20435 0.94610 0.99278 0.98355 1.21586 1.00309 0.95294 0.98455 1.21677 0.94431 0.97405 1.01950 1.60194 1.57444 1.08984 1.02347 1.21706 0.99812 0.95849 0.90971 1.19701 0.84639 0.88214 0.83714 1.90544 1.53994 1.15942 1.84327 1.42224 1.60082 1.11132 1.09579 1.19420 1.40180 0.97956 0.85769 0.86279 1.25033 0.97459 0.98350 0.95263 1.69621 1.45135 1.36535 1.00836 0.86687 0.79049 0.85231 0.78516 1.19576 1.20168 1.19572 0.92186 0.91999 0.92360 0.90749 0.89886 0.93763 0.88775 0.91365 0.88516 0.88963 0.87142 0.88274 0.91098 0.91521 0.91788 0.91839 0.91437 0.91663 0.83192 0.93898 0.89853 0.79732 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.16 37.15 0.34 -1.46 16 2 C 0.06 0.76 2.89 -67.72 -0.20 0.57 16 3 H 0.08 1.08 7.80 -51.93 -0.40 0.68 16 4 C 0.13 1.43 5.15 -4.04 -0.02 1.41 16 5 N -0.60 -6.97 2.73 -181.57 -0.50 -7.46 16 6 C 0.08 0.89 9.86 59.85 0.59 1.48 16 7 C 0.51 6.52 7.31 -10.99 -0.08 6.44 16 8 O -0.55 -8.43 13.81 5.55 0.08 -8.36 16 9 C -0.13 -1.36 3.70 -27.88 -0.10 -1.46 16 10 C -0.04 -0.43 2.11 -92.07 -0.19 -0.62 16 11 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 12 C -0.13 -1.62 8.41 -35.90 -0.30 -1.92 16 13 C -0.17 -1.91 9.80 -35.90 -0.35 -2.26 16 14 C -0.09 -0.82 6.12 -28.17 -0.17 -0.99 16 15 C -0.12 -0.98 6.01 -26.51 -0.16 -1.14 16 16 C -0.12 -1.01 5.31 -26.51 -0.14 -1.15 16 17 N -0.66 -9.39 4.13 -108.00 -0.45 -9.83 16 18 C 0.05 0.81 5.96 -4.98 -0.03 0.78 16 19 C 0.45 9.96 7.82 -10.99 -0.09 9.87 16 20 O -0.57 -14.47 15.78 5.55 0.09 -14.38 16 21 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 22 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 23 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 26 Si 0.88 19.43 27.74 -169.99 -4.72 14.71 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 33 H 0.07 0.70 8.07 -51.93 -0.42 0.29 16 34 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 1.18 6.92 -51.93 -0.36 0.82 16 37 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 38 H 0.10 1.02 7.40 -51.93 -0.38 0.64 16 39 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.11 1.58 6.47 -52.48 -0.34 1.24 16 41 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.54 8.12 -51.93 -0.42 0.11 16 46 H 0.07 0.60 8.10 -51.93 -0.42 0.17 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.35 5.11 8.17 -39.29 -0.32 4.78 16 49 H 0.04 0.63 7.44 -51.93 -0.39 0.25 16 50 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 51 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 52 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 409.67 15.07 6.17 6.17 Total: -1.00 -32.51 409.67 -8.74 -41.25 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -8.99 Total: 14.83 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.15 Total: 1.91 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.22 Total: -56.14 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.16 Total: -22.74 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.72 Total: 14.71 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.51 -8.74 -41.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725494125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.342 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds