Wall clock time and date at job start Tue Mar 31 2020 20:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47248 * 2 1 4 4 C 1.53003 * 109.47300 * 119.99418 * 2 1 3 5 5 N 1.46492 * 109.47561 * 175.00118 * 4 2 1 6 6 C 1.46502 * 120.00246 * 270.00163 * 5 4 2 7 7 C 1.34775 * 120.00188 * 90.00130 * 5 4 2 8 8 O 1.21283 * 120.00000 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00245 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47295 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.35948 * 55.26854 * 10 9 7 12 12 C 1.50065 * 109.48230 * 295.83059 * 10 9 7 13 13 C 1.29443 * 124.07980 * 223.00478 * 12 10 9 14 14 C 1.50070 * 124.07366 * 359.94620 * 13 12 10 15 15 C 1.53027 * 110.14693 * 343.13269 * 14 13 12 16 16 C 1.53022 * 109.35935 * 175.00086 * 10 9 7 17 17 N 1.46894 * 109.47658 * 239.99670 * 2 1 3 18 18 C 1.46901 * 111.00371 * 84.99643 * 17 2 1 19 19 C 1.50693 * 109.47478 * 180.02562 * 18 17 2 20 20 O 1.21292 * 120.00166 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99968 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99922 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99769 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99831 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99710 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99961 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47261 * 89.99886 * 26 24 22 28 28 H 1.48499 * 109.46662 * 210.00093 * 26 24 22 29 29 H 1.48494 * 109.47110 * 329.99516 * 26 24 22 30 30 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47370 * 300.00304 * 1 2 3 32 32 H 1.09001 * 109.46844 * 60.00445 * 1 2 3 33 33 H 1.09004 * 109.46785 * 54.99865 * 4 2 1 34 34 H 1.09001 * 109.47075 * 295.00746 * 4 2 1 35 35 H 1.08993 * 109.47530 * 270.00280 * 6 5 4 36 36 H 1.09006 * 109.46973 * 30.00130 * 6 5 4 37 37 H 1.09004 * 109.47442 * 149.99653 * 6 5 4 38 38 H 1.08997 * 109.47465 * 59.99576 * 9 7 5 39 39 H 1.09007 * 109.46629 * 299.99702 * 9 7 5 40 40 H 1.08004 * 117.96441 * 42.76070 * 12 10 9 41 41 H 1.08002 * 117.96781 * 180.23731 * 13 12 10 42 42 H 1.09000 * 109.35664 * 103.33988 * 14 13 12 43 43 H 1.08997 * 109.35897 * 223.06676 * 14 13 12 44 44 H 1.08997 * 109.64512 * 169.11725 * 15 14 13 45 45 H 1.09001 * 109.64307 * 289.75441 * 15 14 13 46 46 H 1.08993 * 109.64759 * 49.95222 * 16 10 9 47 47 H 1.09000 * 109.81311 * 289.42586 * 16 10 9 48 48 H 1.00904 * 111.00064 * 321.04620 * 17 2 1 49 49 H 1.09003 * 109.46988 * 300.01153 * 18 17 2 50 50 H 1.09000 * 109.46507 * 60.00492 * 18 17 2 51 51 H 0.97003 * 120.00143 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99523 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1141 2.2371 9 6 5.7694 0.0415 1.6549 10 6 6.3962 1.2700 2.3173 11 1 6.0110 1.3693 3.3322 12 6 6.0371 2.4987 1.5343 13 6 6.8705 3.4478 1.2514 14 6 8.3122 3.4526 1.6678 15 6 8.5405 2.4359 2.7885 16 6 7.9162 1.1000 2.3659 17 7 2.0197 -0.6925 -1.1993 18 6 2.0825 0.2224 -2.3469 19 6 2.5875 -0.5220 -3.5559 20 8 2.8671 -1.6991 -3.4702 21 7 2.7274 0.1200 -4.7326 22 6 3.1863 -0.5575 -5.8327 23 1 3.4353 -1.6056 -5.7564 24 6 3.3311 0.1045 -7.0458 25 7 3.7715 -0.5447 -8.1001 26 14 2.9011 1.9176 -7.1776 27 1 4.1027 2.7348 -6.8717 28 1 2.4364 2.2171 -8.5558 29 1 1.8224 2.2420 -6.2101 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7197 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 4.2822 -2.7687 1.3099 36 1 3.4757 -2.3722 -0.2265 37 1 5.0852 -1.7020 0.1327 38 1 6.0880 -0.0128 0.6140 39 1 6.0906 -0.8579 2.1806 40 1 5.0208 2.5954 1.1816 41 1 6.5045 4.2909 0.6841 42 1 8.9363 3.1938 0.8125 43 1 8.5820 4.4467 2.0243 44 1 9.6101 2.3049 2.9521 45 1 8.0669 2.7881 3.7049 46 1 8.2852 0.8187 1.3797 47 1 8.1786 0.3279 3.0892 48 1 1.4496 -1.4980 -1.4099 49 1 1.0871 0.6162 -2.5525 50 1 2.7589 1.0460 -2.1182 51 1 2.5034 1.0613 -4.8013 52 1 3.8722 -0.0826 -8.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725494125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:10 Heat of formation + Delta-G solvation = -84.823679 kcal Electronic energy + Delta-G solvation = -30100.438632 eV Core-core repulsion = 26098.828283 eV Total energy + Delta-G solvation = -4001.610349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17355 -40.32763 -39.27498 -37.98032 -36.09958 -35.72364 -33.77120 -33.63395 -32.13742 -31.86176 -28.92340 -28.15968 -27.82969 -26.29388 -25.37888 -23.28115 -22.98523 -21.93262 -21.29513 -20.33515 -19.88945 -18.83577 -18.00757 -17.66883 -17.26610 -16.90992 -16.85371 -16.47910 -16.40962 -15.97712 -15.40339 -15.15645 -14.96887 -14.94261 -14.70937 -14.43916 -14.17623 -13.90452 -13.73935 -13.64409 -13.48305 -13.46551 -13.26219 -13.16907 -13.08342 -12.98908 -12.84808 -12.70355 -12.50291 -12.42671 -12.28125 -11.99899 -11.92527 -11.68280 -11.52412 -11.39299 -11.02405 -10.55068 -10.45461 -10.24960 -9.86033 -9.66403 -9.12396 -8.42283 -6.02189 1.28035 1.32902 1.41167 1.43447 1.74367 1.94448 2.20573 2.21772 2.70793 3.14177 3.42275 3.62127 3.81856 3.85487 3.93941 4.03555 4.08201 4.21290 4.28798 4.30140 4.38266 4.38924 4.44868 4.49627 4.52131 4.56802 4.62673 4.70885 4.73525 4.80122 4.85255 4.87595 4.91672 4.93168 4.98009 5.07763 5.10425 5.22038 5.22671 5.26311 5.43271 5.50669 5.51654 5.67702 5.82372 5.89419 6.01529 6.10680 6.42563 6.56685 6.58724 6.87308 7.31129 7.39133 7.94296 8.75162 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009066 B = 0.003139 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.884781 B = 8917.078197 C =10738.738945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 H 0.063 0.937 4 C 0.129 3.871 5 N -0.596 5.596 6 C 0.086 3.914 7 C 0.506 3.494 8 O -0.581 6.581 9 C -0.128 4.128 10 C -0.037 4.037 11 H 0.074 0.926 12 C -0.150 4.150 13 C -0.170 4.170 14 C -0.091 4.091 15 C -0.118 4.118 16 C -0.114 4.114 17 N -0.664 5.664 18 C 0.065 3.935 19 C 0.454 3.546 20 O -0.605 6.605 21 N -0.594 5.594 22 C -0.325 4.325 23 H 0.060 0.940 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.959 3.041 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.347 0.653 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.387 0.613 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 6.051 24.157 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 H 0.082 0.918 4 C 0.005 3.995 5 N -0.326 5.326 6 C -0.057 4.057 7 C 0.296 3.704 8 O -0.462 6.462 9 C -0.167 4.167 10 C -0.055 4.055 11 H 0.092 0.908 12 C -0.169 4.169 13 C -0.189 4.189 14 C -0.128 4.128 15 C -0.156 4.156 16 C -0.151 4.151 17 N -0.296 5.296 18 C -0.068 4.068 19 C 0.242 3.758 20 O -0.488 6.488 21 N -0.236 5.236 22 C -0.454 4.454 23 H 0.078 0.922 24 C -0.211 4.211 25 N -0.573 5.573 26 Si 0.780 3.220 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.167 0.833 49 H 0.088 0.912 50 H 0.113 0.887 51 H 0.222 0.778 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.062 5.798 24.423 25.288 hybrid contribution -1.345 0.959 -1.343 2.129 sum 1.717 6.758 23.080 24.110 Atomic orbital electron populations 1.22380 0.95019 1.03121 1.02861 1.21986 0.93933 0.97640 0.90329 0.91840 1.21500 0.79728 1.01693 0.96533 1.47704 1.06516 1.21744 1.56665 1.21853 0.99040 0.86914 0.97897 1.21091 0.90641 0.81608 0.77065 1.90637 1.76032 1.32452 1.47088 1.21744 0.90397 1.00875 1.03697 1.19781 0.95966 0.91355 0.98436 0.90814 1.22150 0.98675 0.96350 0.99682 1.22231 0.96610 0.98740 1.01269 1.20496 0.92921 1.00385 0.98968 1.21608 1.01413 0.94701 0.97851 1.21677 0.92697 0.98255 1.02480 1.60173 1.58259 1.08868 1.02302 1.21557 1.01026 0.95397 0.88801 1.20796 0.82461 0.87951 0.84613 1.90528 1.55023 1.18139 1.85154 1.42076 1.60735 1.11790 1.08961 1.19008 1.42089 0.96149 0.88127 0.92194 1.26025 0.96557 1.04512 0.94022 1.69792 1.46406 1.39388 1.01765 0.85441 0.80059 0.77161 0.79363 1.18422 1.19898 1.15899 0.91203 0.90753 0.92661 0.88942 0.90076 0.91204 0.90607 0.91504 0.88873 0.86447 0.89931 0.88609 0.90551 0.90362 0.89922 0.92110 0.91544 0.89832 0.83334 0.91230 0.88697 0.77817 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.16 71.98 0.66 -2.40 16 2 C 0.07 1.59 2.89 44.92 0.13 1.72 16 3 H 0.06 1.65 7.80 -2.39 -0.02 1.63 16 4 C 0.13 2.65 5.15 86.38 0.44 3.10 16 5 N -0.60 -13.35 2.73 -846.75 -2.31 -15.67 16 6 C 0.09 1.74 9.86 127.77 1.26 3.00 16 7 C 0.51 12.62 7.31 87.66 0.64 13.26 16 8 O -0.58 -17.96 13.81 -3.04 -0.04 -18.00 16 9 C -0.13 -2.49 3.70 29.85 0.11 -2.38 16 10 C -0.04 -0.74 2.11 -11.73 -0.02 -0.77 16 11 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16 12 C -0.15 -3.70 8.41 27.04 0.23 -3.47 16 13 C -0.17 -3.73 9.80 27.04 0.27 -3.47 16 14 C -0.09 -1.50 6.12 29.66 0.18 -1.32 16 15 C -0.12 -1.71 6.01 30.74 0.18 -1.52 16 16 C -0.11 -1.73 5.31 30.73 0.16 -1.57 16 17 N -0.66 -18.18 4.13 -495.60 -2.05 -20.23 16 18 C 0.06 2.01 5.96 85.55 0.51 2.52 16 19 C 0.45 20.00 7.82 87.66 0.69 20.68 16 20 O -0.60 -31.76 15.78 -3.07 -0.05 -31.81 16 21 N -0.59 -27.90 5.09 -306.99 -1.56 -29.47 16 22 C -0.32 -18.81 10.16 84.04 0.85 -17.95 16 23 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.93 -55.92 13.96 21.66 0.30 -55.61 16 26 Si 0.96 39.20 27.74 68.60 1.90 41.10 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.24 -8.23 6.52 99.48 0.65 -7.58 16 30 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.01 7.45 -2.39 -0.02 1.00 16 33 H 0.09 1.56 8.07 -2.38 -0.02 1.55 16 34 H 0.08 1.74 7.42 -2.39 -0.02 1.72 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.86 6.92 -2.38 -0.02 1.84 16 37 H 0.07 1.37 6.44 -2.38 -0.02 1.36 16 38 H 0.09 1.90 7.40 -2.39 -0.02 1.89 16 39 H 0.12 1.66 8.11 -2.38 -0.02 1.64 16 40 H 0.08 2.47 6.47 -2.91 -0.02 2.45 16 41 H 0.10 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 46 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.35 9.81 8.17 -89.69 -0.73 9.08 16 49 H 0.07 1.84 7.44 -2.39 -0.02 1.82 16 50 H 0.09 2.79 8.06 -2.39 -0.02 2.78 16 51 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 52 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -75.19 409.67 2.54 -72.65 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.41 Total: 47.82 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.76 Total: 9.22 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -5.62 Total: -120.98 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.09 Total: -49.81 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.10 kcal Total: -75.19 2.54 -72.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725494125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.172 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds