Wall clock time and date at job start Tue Mar 31 2020 20:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47099 * 2 1 4 4 C 1.52991 * 109.47210 * 240.00010 * 2 1 3 5 5 N 1.46498 * 109.47325 * 184.99936 * 4 2 1 6 6 C 1.46503 * 120.00266 * 269.99880 * 5 4 2 7 7 C 1.34778 * 120.00420 * 89.99878 * 5 4 2 8 8 O 1.21288 * 119.99502 * 0.02562 * 7 5 4 9 9 C 1.50700 * 120.00374 * 180.02562 * 7 5 4 10 10 C 1.52996 * 109.46968 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.25022 * 55.34254 * 10 9 7 12 12 C 1.50554 * 109.62887 * 295.54131 * 10 9 7 13 13 C 1.29444 * 124.15480 * 222.78685 * 12 10 9 14 14 C 1.50065 * 124.08236 * 0.40829 * 13 12 10 15 15 C 1.53024 * 110.14177 * 342.87009 * 14 13 12 16 16 C 1.53025 * 109.35898 * 175.00087 * 10 9 7 17 17 N 1.46902 * 109.47257 * 119.99775 * 2 1 3 18 18 C 1.46903 * 111.00078 * 275.00352 * 17 2 1 19 19 C 1.50704 * 109.47046 * 179.97438 * 18 17 2 20 20 O 1.21291 * 119.99887 * 0.02562 * 19 18 17 21 21 N 1.34772 * 120.00181 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00445 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99335 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00134 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00218 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99876 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47373 * 59.99448 * 26 24 22 28 28 H 1.48502 * 109.47247 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47187 * 299.99711 * 26 24 22 30 30 H 1.09003 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 299.99767 * 1 2 3 32 32 H 1.08994 * 109.47554 * 60.00123 * 1 2 3 33 33 H 1.09003 * 109.47476 * 65.00208 * 4 2 1 34 34 H 1.09004 * 109.47169 * 305.00059 * 4 2 1 35 35 H 1.08990 * 109.47471 * 270.00272 * 6 5 4 36 36 H 1.09009 * 109.46475 * 29.99966 * 6 5 4 37 37 H 1.09004 * 109.47436 * 149.99570 * 6 5 4 38 38 H 1.09000 * 109.46794 * 59.99893 * 9 7 5 39 39 H 1.08993 * 109.46846 * 300.00167 * 9 7 5 40 40 H 1.07999 * 117.87942 * 42.70105 * 12 10 9 41 41 H 1.08005 * 117.95348 * 180.38852 * 13 12 10 42 42 H 1.08996 * 109.35846 * 222.66432 * 14 13 12 43 43 H 1.08994 * 109.35974 * 103.07523 * 14 13 12 44 44 H 1.08997 * 109.64352 * 289.74958 * 15 14 13 45 45 H 1.09005 * 109.81533 * 169.22743 * 15 14 13 46 46 H 1.09002 * 109.64203 * 49.95717 * 16 10 9 47 47 H 1.09002 * 109.64069 * 289.54100 * 16 10 9 48 48 H 1.00903 * 110.99474 * 38.95693 * 17 2 1 49 49 H 1.08993 * 109.46872 * 299.99908 * 18 17 2 50 50 H 1.09002 * 109.46935 * 59.99788 * 18 17 2 51 51 H 0.97010 * 119.99698 * 359.97438 * 21 19 18 52 52 H 0.96998 * 119.99901 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6115 8 8 3.3851 -2.7767 -0.1394 9 6 5.5777 -2.0064 -0.5507 10 6 5.9674 -3.3082 0.1524 11 1 5.4944 -4.1475 -0.3574 12 6 5.5030 -3.2684 1.5840 13 6 6.2123 -3.6701 2.5895 14 6 7.6018 -4.2243 2.4705 15 6 7.8823 -4.6372 1.0240 16 6 7.4876 -3.4761 0.1027 17 7 2.0197 -0.6924 1.1995 18 6 2.0824 0.2227 2.3469 19 6 2.5873 -0.5217 3.5561 20 8 2.8678 -1.6987 3.4703 21 7 2.7272 0.1202 4.7328 22 6 3.1870 -0.5568 5.8327 23 1 3.4368 -1.6048 5.7562 24 6 3.3318 0.1053 7.0457 25 7 3.0284 1.3805 7.1385 26 14 3.9590 -0.8171 8.5441 27 1 5.3152 -1.3529 8.2637 28 1 4.0227 0.1081 9.7040 29 1 3.0380 -1.9396 8.8557 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.7517 -0.1583 -2.1369 34 1 1.6053 -1.7198 -1.2951 35 1 4.5424 0.0094 -2.8072 36 1 3.8089 1.1867 -1.6918 37 1 5.2722 0.2953 -1.2092 38 1 5.9806 -1.1593 0.0045 39 1 5.9833 -2.0039 -1.5623 40 1 4.5159 -2.8786 1.7840 41 1 5.7770 -3.6019 3.5756 42 1 7.7008 -5.0939 3.1202 43 1 8.3212 -3.4644 2.7753 44 1 7.2935 -5.5197 0.7741 45 1 8.9428 -4.8578 0.9017 46 1 7.9688 -2.5589 0.4424 47 1 7.7987 -3.6965 -0.9185 48 1 1.4495 -1.4979 1.4100 49 1 2.7587 1.0462 2.1182 50 1 1.0870 0.6163 2.5525 51 1 2.5033 1.0616 4.8013 52 1 3.1298 1.8428 7.9853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725494126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:14 Heat of formation + Delta-G solvation = -88.335011 kcal Electronic energy + Delta-G solvation = -31084.642896 eV Core-core repulsion = 27082.880285 eV Total energy + Delta-G solvation = -4001.762612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96889 -40.11827 -39.17983 -37.75416 -36.05457 -35.65806 -33.57071 -33.26096 -31.98859 -31.75908 -28.84791 -27.95411 -27.80008 -26.18051 -25.60363 -23.22770 -22.90830 -21.71904 -21.10403 -19.96944 -19.76395 -18.79566 -17.83396 -17.76030 -16.99287 -16.86900 -16.64428 -16.37753 -16.23525 -15.98266 -15.51231 -15.12339 -15.03085 -14.87987 -14.49788 -14.24454 -13.76040 -13.72157 -13.57061 -13.54284 -13.42033 -13.37586 -13.19238 -13.13425 -12.96746 -12.96372 -12.83917 -12.67167 -12.46445 -12.38552 -12.20968 -12.13936 -11.83477 -11.65432 -11.50572 -11.33095 -10.93181 -10.33128 -10.29021 -10.00093 -9.79383 -9.43706 -9.02757 -8.47389 -5.95081 1.35842 1.36729 1.47843 1.52409 2.05023 2.07761 2.26813 2.38766 2.98723 3.19755 3.56149 3.76977 3.85688 3.93725 3.98224 4.09212 4.21238 4.31925 4.34253 4.35811 4.43364 4.45268 4.47982 4.54118 4.57517 4.60067 4.65260 4.76237 4.79890 4.83486 4.85492 4.90368 4.93581 4.98763 5.07009 5.07946 5.09812 5.12785 5.25790 5.26265 5.38779 5.50714 5.53664 5.84078 5.93325 5.94644 6.21304 6.30262 6.47419 6.61793 6.73408 7.13709 7.57359 7.64502 8.15193 8.70180 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007954 B = 0.004489 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.463256 B = 6235.686332 C = 9112.582919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.066 3.934 3 H 0.087 0.913 4 C 0.131 3.869 5 N -0.612 5.612 6 C 0.075 3.925 7 C 0.512 3.488 8 O -0.560 6.560 9 C -0.122 4.122 10 C -0.034 4.034 11 H 0.071 0.929 12 C -0.136 4.136 13 C -0.187 4.187 14 C -0.084 4.084 15 C -0.114 4.114 16 C -0.109 4.109 17 N -0.658 5.658 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.610 6.610 21 N -0.577 5.577 22 C -0.328 4.328 23 H 0.072 0.928 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.987 3.013 27 H -0.274 1.274 28 H -0.266 1.266 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.336 0.664 49 H 0.096 0.904 50 H 0.056 0.944 51 H 0.394 0.606 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.530 0.696 -22.037 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.045 4.045 3 H 0.105 0.895 4 C 0.007 3.993 5 N -0.345 5.345 6 C -0.067 4.067 7 C 0.301 3.699 8 O -0.438 6.438 9 C -0.162 4.162 10 C -0.052 4.052 11 H 0.089 0.911 12 C -0.155 4.155 13 C -0.205 4.205 14 C -0.120 4.120 15 C -0.152 4.152 16 C -0.146 4.146 17 N -0.290 5.290 18 C -0.063 4.063 19 C 0.225 3.775 20 O -0.495 6.495 21 N -0.215 5.215 22 C -0.458 4.458 23 H 0.090 0.910 24 C -0.211 4.211 25 N -0.562 5.562 26 Si 0.811 3.189 27 H -0.199 1.199 28 H -0.191 1.191 29 H -0.200 1.200 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.154 0.846 49 H 0.114 0.886 50 H 0.074 0.926 51 H 0.228 0.772 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.031 -0.325 -21.857 22.676 hybrid contribution -1.433 0.305 1.951 2.440 sum 4.598 -0.021 -19.906 20.430 Atomic orbital electron populations 1.22381 0.95878 1.02013 1.03071 1.22157 0.93450 0.98262 0.90638 0.89451 1.21470 0.80132 1.00893 0.96760 1.47672 1.06634 1.21425 1.58779 1.21960 0.95465 0.90291 0.98959 1.20844 0.91129 0.81469 0.76447 1.90675 1.65823 1.41503 1.45788 1.21685 0.91943 0.99033 1.03538 1.19878 0.96620 0.97129 0.91603 0.91122 1.22427 0.99130 0.98418 0.95477 1.22077 0.98146 1.03008 0.97311 1.20434 0.92675 1.00302 0.98639 1.21584 1.02163 0.98105 0.93300 1.21668 0.92866 0.99089 1.00983 1.60114 1.58452 1.07963 1.02438 1.21503 1.00188 0.95307 0.89336 1.20934 0.83325 0.88167 0.85114 1.90539 1.55639 1.18063 1.85223 1.41906 1.58948 1.12436 1.08175 1.19518 1.41975 0.95632 0.88630 0.91018 1.25946 0.97397 0.96606 1.01131 1.69661 1.48940 1.09554 1.28079 0.85078 0.78648 0.77921 0.77225 1.19941 1.19058 1.19969 0.93287 0.93236 0.89343 0.87031 0.92434 0.90681 0.90083 0.91059 0.89282 0.85779 0.90015 0.92210 0.91224 0.90713 0.92416 0.89130 0.91391 0.88863 0.84580 0.88605 0.92583 0.77229 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 9.16 71.98 0.66 -2.81 16 2 C 0.07 1.53 2.89 44.91 0.13 1.66 16 3 H 0.09 1.81 7.80 -2.39 -0.02 1.79 16 4 C 0.13 2.73 5.20 86.38 0.45 3.18 16 5 N -0.61 -13.54 2.78 -846.75 -2.35 -15.89 16 6 C 0.08 0.99 10.24 127.77 1.31 2.30 16 7 C 0.51 15.15 6.65 87.66 0.58 15.73 16 8 O -0.56 -22.09 12.99 -3.05 -0.04 -22.13 16 9 C -0.12 -2.88 3.70 29.85 0.11 -2.77 16 10 C -0.03 -0.94 2.13 -11.58 -0.02 -0.97 16 11 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 12 C -0.14 -5.34 8.44 27.19 0.23 -5.11 16 13 C -0.19 -7.21 9.80 27.04 0.27 -6.95 16 14 C -0.08 -2.33 6.12 29.66 0.18 -2.14 16 15 C -0.11 -2.45 6.01 30.73 0.18 -2.27 16 16 C -0.11 -2.22 5.29 30.73 0.16 -2.06 16 17 N -0.66 -22.57 4.15 -495.58 -2.06 -24.62 16 18 C 0.07 2.55 5.97 85.56 0.51 3.06 16 19 C 0.44 22.13 7.82 87.66 0.69 22.82 16 20 O -0.61 -36.02 15.43 -3.06 -0.05 -36.07 16 21 N -0.58 -31.10 5.29 -306.99 -1.62 -32.72 16 22 C -0.33 -19.53 9.68 84.04 0.81 -18.71 16 23 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 25 N -0.92 -51.27 13.05 21.66 0.28 -50.98 16 26 Si 0.99 44.97 29.55 68.60 2.03 47.00 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 30 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 34 H 0.06 1.50 7.42 -2.38 -0.02 1.48 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.84 8.07 -2.38 -0.02 0.82 16 37 H 0.07 0.93 6.44 -2.38 -0.02 0.92 16 38 H 0.09 2.13 7.40 -2.39 -0.02 2.11 16 39 H 0.12 1.88 8.11 -2.39 -0.02 1.86 16 40 H 0.08 4.11 6.16 -2.91 -0.02 4.09 16 41 H 0.06 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 45 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 47 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.34 13.47 8.17 -89.69 -0.73 12.74 16 49 H 0.10 3.21 8.05 -2.39 -0.02 3.19 16 50 H 0.06 1.87 7.44 -2.39 -0.02 1.85 16 51 H 0.39 20.20 7.90 -92.70 -0.73 19.47 16 52 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -79.12 412.34 2.36 -76.76 By element: Atomic # 1 Polarization: 54.41 SS G_CDS: -0.55 Total: 53.86 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.72 Total: 4.80 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.75 Total: -124.22 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -0.09 Total: -58.20 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.12 2.36 -76.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725494126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.576 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds