Wall clock time and date at job start Tue Mar 31 2020 20:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47406 * 2 1 4 4 N 1.46502 * 109.47293 * 120.00028 * 2 1 3 5 5 C 1.34771 * 119.99885 * 275.00207 * 4 2 1 6 6 O 1.21278 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00069 * 179.97438 * 5 4 2 8 8 C 1.53004 * 115.55085 * 34.33109 * 7 5 4 9 9 C 1.52997 * 117.50091 * 248.62210 * 7 5 4 10 10 C 1.53004 * 117.49998 * 179.97438 * 7 5 4 11 11 C 1.53007 * 109.47024 * 239.99657 * 2 1 3 12 12 H 1.08994 * 109.50540 * 300.00142 * 11 2 1 13 13 C 1.53121 * 109.50139 * 179.97438 * 11 2 1 14 14 C 1.53208 * 109.11655 * 182.40541 * 13 11 2 15 15 C 1.53039 * 109.29718 * 57.62566 * 14 13 11 16 16 N 1.46843 * 109.52640 * 300.82414 * 15 14 13 17 17 C 1.46897 * 110.99879 * 185.84071 * 16 15 14 18 18 C 1.50703 * 109.46958 * 169.43117 * 17 16 15 19 19 O 1.21285 * 119.99981 * 353.78244 * 18 17 16 20 20 N 1.34774 * 119.99942 * 173.77858 * 18 17 16 21 21 C 1.37100 * 120.00276 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99751 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00502 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00235 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99608 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47291 * 89.99856 * 25 23 21 27 27 H 1.48503 * 109.46922 * 209.99719 * 25 23 21 28 28 H 1.48500 * 109.47356 * 329.99734 * 25 23 21 29 29 C 1.46849 * 111.19795 * 61.74306 * 16 15 14 30 30 H 1.09004 * 109.47398 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47274 * 300.00286 * 1 2 3 32 32 H 1.09003 * 109.46949 * 60.00343 * 1 2 3 33 33 H 0.97004 * 120.00102 * 94.98932 * 4 2 1 34 34 H 1.08998 * 109.47395 * 85.57962 * 8 7 5 35 35 H 1.08997 * 109.47493 * 205.58171 * 8 7 5 36 36 H 1.09004 * 109.46900 * 325.58482 * 8 7 5 37 37 H 1.09003 * 117.50222 * 359.97438 * 9 7 5 38 38 H 1.09000 * 117.49994 * 145.02472 * 9 7 5 39 39 H 1.08994 * 117.49840 * 214.97947 * 10 7 5 40 40 H 1.08995 * 117.49923 * 0.02562 * 10 7 5 41 41 H 1.09004 * 109.52220 * 302.26980 * 13 11 2 42 42 H 1.09001 * 109.52589 * 62.45945 * 13 11 2 43 43 H 1.08995 * 109.48768 * 297.68442 * 14 13 11 44 44 H 1.08997 * 109.52474 * 177.59567 * 14 13 11 45 45 H 1.08996 * 109.46224 * 180.80373 * 15 14 13 46 46 H 1.09005 * 109.46097 * 60.83897 * 15 14 13 47 47 H 1.09001 * 109.47214 * 289.42600 * 17 16 15 48 48 H 1.08991 * 109.47618 * 49.43171 * 17 16 15 49 49 H 0.97004 * 120.00283 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00275 * 180.02562 * 24 23 21 51 51 H 1.09005 * 109.46030 * 178.24397 * 29 16 15 52 52 H 1.08997 * 109.45674 * 58.27141 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1585 2.4115 7 6 2.6488 -0.7288 3.5877 8 6 3.6934 -1.8191 3.3404 9 6 1.6564 -0.9470 4.7315 10 6 2.7734 0.0895 4.8745 11 6 2.0399 -0.7214 -1.2493 12 1 1.6769 -1.7491 -1.2498 13 6 3.5711 -0.7212 -1.2503 14 6 4.0721 -1.3920 -2.5334 15 6 3.5060 -0.6498 -3.7462 16 7 2.0387 -0.6788 -3.6985 17 6 1.4607 -0.0967 -4.9171 18 6 -0.0200 -0.3746 -4.9530 19 8 -0.5232 -1.0905 -4.1133 20 7 -0.7851 0.1726 -5.9183 21 6 -2.1321 -0.0806 -5.9514 22 1 -2.5802 -0.7182 -5.2036 23 6 -2.9208 0.4831 -6.9468 24 7 -4.2120 0.2408 -6.9782 25 14 -2.1456 1.5853 -8.2405 26 1 -1.7110 0.7613 -9.3968 27 1 -3.1400 2.5903 -8.6948 28 1 -0.9697 2.2806 -7.6583 29 6 1.5329 0.0014 -2.4993 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2489 -1.6319 1.1527 34 1 4.6854 -1.3694 3.2999 35 1 3.6574 -2.5473 4.1506 36 1 3.4814 -2.3173 2.3943 37 1 0.6406 -0.5764 4.5942 38 1 1.7475 -1.8676 5.3080 39 1 3.5988 -0.1495 5.5450 40 1 2.4919 1.1416 4.8311 41 1 3.9353 0.3054 -1.2101 42 1 3.9361 -1.2724 -0.3836 43 1 3.7402 -2.4300 -2.5546 44 1 5.1611 -1.3574 -2.5613 45 1 3.8493 -1.1336 -4.6607 46 1 3.8495 0.3846 -3.7318 47 1 1.6284 0.9804 -4.9201 48 1 1.9350 -0.5407 -5.7922 49 1 -0.3826 0.7450 -6.5901 50 1 -4.7625 0.6340 -7.6733 51 1 0.4430 -0.0095 -2.5081 52 1 1.8858 1.0327 -2.4908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731555345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:38 Heat of formation + Delta-G solvation = -49.383536 kcal Electronic energy + Delta-G solvation = -30205.356900 eV Core-core repulsion = 26205.283351 eV Total energy + Delta-G solvation = -4000.073549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53853 -39.43944 -38.03862 -37.00088 -35.66241 -33.99818 -32.94835 -31.96329 -31.63659 -29.22144 -28.51745 -27.65797 -24.91478 -24.43186 -23.14552 -22.78744 -22.61124 -20.76157 -20.14788 -19.33647 -19.27646 -18.26609 -17.25965 -16.44046 -16.07539 -15.59281 -15.17890 -15.03141 -14.88185 -14.75337 -14.42539 -14.25441 -13.89312 -13.72210 -13.52300 -13.37998 -13.23974 -12.93531 -12.89456 -12.65848 -12.65311 -12.43420 -12.34848 -11.94296 -11.82190 -11.61478 -11.54232 -11.40020 -11.11520 -10.97576 -10.88654 -10.63759 -10.59116 -10.42178 -10.32140 -10.26578 -9.96785 -9.82982 -9.51839 -9.13705 -8.54351 -8.16729 -7.95154 -6.30262 -3.81446 2.35378 2.95254 3.03029 3.07226 3.15560 3.51484 3.75602 3.91123 4.11001 4.27616 4.41491 4.49862 4.56120 4.61685 4.74273 4.83210 4.91586 5.08894 5.21258 5.23776 5.28194 5.29899 5.31741 5.38595 5.38804 5.43987 5.47147 5.56234 5.59222 5.64603 5.68477 5.72317 5.72572 5.80398 5.82802 5.86638 5.93557 5.96710 5.99475 6.04077 6.11937 6.29336 6.33071 6.48703 6.52487 7.19455 7.33503 7.40452 7.59888 8.11858 8.15512 8.61495 8.96418 9.43712 9.84913 10.82886 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.002447 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.953005 B =11438.871032 C =12481.649747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.085 0.915 4 N -0.716 5.716 5 C 0.550 3.450 6 O -0.541 6.541 7 C -0.169 4.169 8 C -0.113 4.113 9 C -0.150 4.150 10 C -0.145 4.145 11 C -0.088 4.088 12 H 0.087 0.913 13 C -0.114 4.114 14 C -0.114 4.114 15 C 0.054 3.946 16 N -0.513 5.513 17 C 0.043 3.957 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.061 3.939 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.105 0.895 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.654 -2.377 16.678 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.336 3.664 6 O -0.418 6.418 7 C -0.172 4.172 8 C -0.171 4.171 9 C -0.187 4.187 10 C -0.183 4.183 11 C -0.107 4.107 12 H 0.106 0.894 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.075 4.075 16 N -0.238 5.238 17 C -0.088 4.088 18 C 0.238 3.762 19 O -0.438 6.438 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.067 4.067 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.123 0.877 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.735 -2.472 17.178 25.539 hybrid contribution 0.786 1.298 -1.379 2.051 sum 19.521 -1.174 15.799 25.141 Atomic orbital electron populations 1.22212 0.94525 1.02814 1.02709 1.20982 0.94542 0.96963 0.83046 0.89694 1.46041 1.67129 1.14010 1.09563 1.19439 0.77000 0.86490 0.83516 1.90697 1.50443 1.15893 1.84790 1.21520 1.03293 1.02636 0.89772 1.21348 0.97211 0.96173 1.02336 1.23108 0.95700 1.01393 0.98498 1.23026 1.00728 0.98300 0.96210 1.21417 0.95098 1.01167 0.93024 0.89438 1.21645 0.95192 1.00700 0.97606 1.21565 0.99187 1.00507 0.93905 1.22124 0.87926 0.98520 0.98887 1.61441 1.05214 1.55777 1.01317 1.21887 0.95525 0.97741 0.93671 1.19655 0.87278 0.84952 0.84346 1.90540 1.73984 1.39641 1.39660 1.42237 1.08897 1.45172 1.26917 1.19415 0.80679 1.29253 1.13831 0.86267 1.25033 0.95349 0.97983 0.97826 1.69618 1.04218 1.44163 1.34197 0.86684 0.79339 0.81052 0.82380 1.19635 1.20222 1.19553 1.22219 1.02745 0.93551 0.88144 0.92017 0.92550 0.90673 0.76564 0.91592 0.91455 0.91861 0.88270 0.87793 0.88027 0.87464 0.92377 0.92086 0.90918 0.91768 0.90847 0.95322 0.93571 0.89096 0.79776 0.91646 0.87730 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.13 37.15 0.34 -1.94 16 2 C 0.15 1.84 2.16 -67.93 -0.15 1.69 16 3 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.72 -7.45 4.32 -53.81 -0.23 -7.68 16 5 C 0.55 6.50 7.36 -10.99 -0.08 6.42 16 6 O -0.54 -8.54 15.92 5.56 0.09 -8.45 16 7 C -0.17 -1.45 2.61 -155.66 -0.41 -1.85 16 8 C -0.11 -0.67 9.79 37.16 0.36 -0.31 16 9 C -0.15 -1.13 9.88 -26.71 -0.26 -1.39 16 10 C -0.15 -1.16 9.77 -26.70 -0.26 -1.42 16 11 C -0.09 -1.08 1.98 -90.54 -0.18 -1.26 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.16 5.10 -26.56 -0.14 -1.29 16 14 C -0.11 -1.15 6.10 -26.60 -0.16 -1.31 16 15 C 0.05 0.64 5.46 -3.83 -0.02 0.61 16 16 N -0.51 -7.95 4.35 -236.12 -1.03 -8.97 16 17 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 18 C 0.45 10.07 7.31 -10.99 -0.08 9.99 16 19 O -0.56 -14.41 14.28 5.55 0.08 -14.33 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 21 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 22 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 25 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 29 C 0.06 0.94 4.03 -3.83 -0.02 0.92 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.14 6.45 -51.93 -0.34 0.80 16 33 H 0.40 3.26 6.70 -40.82 -0.27 2.99 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.31 7.90 -51.93 -0.41 -0.10 16 36 H 0.06 0.33 6.38 -51.93 -0.33 0.00 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.53 7.54 -51.93 -0.39 0.14 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.80 8.01 -51.93 -0.42 0.39 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 48 H 0.09 1.32 7.98 -51.93 -0.41 0.91 16 49 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.10 1.94 4.39 -51.93 -0.23 1.72 16 52 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -33.59 405.95 -9.17 -42.76 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -8.87 Total: 12.97 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.32 Total: 1.93 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.54 Total: -55.65 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.59 -9.17 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.627 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds