Wall clock time and date at job start Tue Mar 31 2020 20:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47406 * 2 1 4 4 N 1.46502 * 109.47293 * 120.00028 * 2 1 3 5 5 C 1.34771 * 119.99885 * 275.00207 * 4 2 1 6 6 O 1.21278 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00069 * 179.97438 * 5 4 2 8 8 C 1.53004 * 115.55085 * 34.33109 * 7 5 4 9 9 C 1.52997 * 117.50091 * 248.62210 * 7 5 4 10 10 C 1.53004 * 117.49998 * 179.97438 * 7 5 4 11 11 C 1.53007 * 109.47024 * 239.99657 * 2 1 3 12 12 H 1.08994 * 109.50540 * 300.00142 * 11 2 1 13 13 C 1.53121 * 109.50139 * 179.97438 * 11 2 1 14 14 C 1.53208 * 109.11655 * 182.40541 * 13 11 2 15 15 C 1.53039 * 109.29718 * 57.62566 * 14 13 11 16 16 N 1.46843 * 109.52640 * 300.82414 * 15 14 13 17 17 C 1.46897 * 110.99879 * 185.84071 * 16 15 14 18 18 C 1.50703 * 109.46958 * 169.43117 * 17 16 15 19 19 O 1.21285 * 119.99981 * 353.78244 * 18 17 16 20 20 N 1.34774 * 119.99942 * 173.77858 * 18 17 16 21 21 C 1.37100 * 120.00276 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99751 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00502 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00235 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99608 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47291 * 89.99856 * 25 23 21 27 27 H 1.48503 * 109.46922 * 209.99719 * 25 23 21 28 28 H 1.48500 * 109.47356 * 329.99734 * 25 23 21 29 29 C 1.46849 * 111.19795 * 61.74306 * 16 15 14 30 30 H 1.09004 * 109.47398 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47274 * 300.00286 * 1 2 3 32 32 H 1.09003 * 109.46949 * 60.00343 * 1 2 3 33 33 H 0.97004 * 120.00102 * 94.98932 * 4 2 1 34 34 H 1.08998 * 109.47395 * 85.57962 * 8 7 5 35 35 H 1.08997 * 109.47493 * 205.58171 * 8 7 5 36 36 H 1.09004 * 109.46900 * 325.58482 * 8 7 5 37 37 H 1.09003 * 117.50222 * 359.97438 * 9 7 5 38 38 H 1.09000 * 117.49994 * 145.02472 * 9 7 5 39 39 H 1.08994 * 117.49840 * 214.97947 * 10 7 5 40 40 H 1.08995 * 117.49923 * 0.02562 * 10 7 5 41 41 H 1.09004 * 109.52220 * 302.26980 * 13 11 2 42 42 H 1.09001 * 109.52589 * 62.45945 * 13 11 2 43 43 H 1.08995 * 109.48768 * 297.68442 * 14 13 11 44 44 H 1.08997 * 109.52474 * 177.59567 * 14 13 11 45 45 H 1.08996 * 109.46224 * 180.80373 * 15 14 13 46 46 H 1.09005 * 109.46097 * 60.83897 * 15 14 13 47 47 H 1.09001 * 109.47214 * 289.42600 * 17 16 15 48 48 H 1.08991 * 109.47618 * 49.43171 * 17 16 15 49 49 H 0.97004 * 120.00283 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00275 * 180.02562 * 24 23 21 51 51 H 1.09005 * 109.46030 * 178.24397 * 29 16 15 52 52 H 1.08997 * 109.45674 * 58.27141 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1585 2.4115 7 6 2.6488 -0.7288 3.5877 8 6 3.6934 -1.8191 3.3404 9 6 1.6564 -0.9470 4.7315 10 6 2.7734 0.0895 4.8745 11 6 2.0399 -0.7214 -1.2493 12 1 1.6769 -1.7491 -1.2498 13 6 3.5711 -0.7212 -1.2503 14 6 4.0721 -1.3920 -2.5334 15 6 3.5060 -0.6498 -3.7462 16 7 2.0387 -0.6788 -3.6985 17 6 1.4607 -0.0967 -4.9171 18 6 -0.0200 -0.3746 -4.9530 19 8 -0.5232 -1.0905 -4.1133 20 7 -0.7851 0.1726 -5.9183 21 6 -2.1321 -0.0806 -5.9514 22 1 -2.5802 -0.7182 -5.2036 23 6 -2.9208 0.4831 -6.9468 24 7 -4.2120 0.2408 -6.9782 25 14 -2.1456 1.5853 -8.2405 26 1 -1.7110 0.7613 -9.3968 27 1 -3.1400 2.5903 -8.6948 28 1 -0.9697 2.2806 -7.6583 29 6 1.5329 0.0014 -2.4993 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2489 -1.6319 1.1527 34 1 4.6854 -1.3694 3.2999 35 1 3.6574 -2.5473 4.1506 36 1 3.4814 -2.3173 2.3943 37 1 0.6406 -0.5764 4.5942 38 1 1.7475 -1.8676 5.3080 39 1 3.5988 -0.1495 5.5450 40 1 2.4919 1.1416 4.8311 41 1 3.9353 0.3054 -1.2101 42 1 3.9361 -1.2724 -0.3836 43 1 3.7402 -2.4300 -2.5546 44 1 5.1611 -1.3574 -2.5613 45 1 3.8493 -1.1336 -4.6607 46 1 3.8495 0.3846 -3.7318 47 1 1.6284 0.9804 -4.9201 48 1 1.9350 -0.5407 -5.7922 49 1 -0.3826 0.7450 -6.5901 50 1 -4.7625 0.6340 -7.6733 51 1 0.4430 -0.0095 -2.5081 52 1 1.8858 1.0327 -2.4908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731555345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:38 Heat of formation + Delta-G solvation = -73.921981 kcal Electronic energy + Delta-G solvation = -30206.420967 eV Core-core repulsion = 26205.283351 eV Total energy + Delta-G solvation = -4001.137616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49413 -40.71785 -39.53340 -37.84967 -36.76651 -35.94613 -34.09278 -33.68267 -32.94421 -30.09077 -29.30366 -29.07914 -26.42730 -25.70665 -24.04089 -23.83477 -23.39674 -21.79297 -21.23784 -21.06449 -20.20617 -20.17395 -18.04465 -17.71650 -17.47826 -16.85639 -16.66374 -16.26480 -16.07732 -15.62225 -15.50581 -15.42765 -15.18402 -14.85938 -14.79144 -14.66285 -14.43157 -14.05332 -13.94559 -13.83595 -13.69468 -13.47495 -13.36523 -13.22485 -13.07506 -12.74674 -12.60891 -12.52847 -12.40629 -12.38682 -11.99258 -11.90926 -11.61693 -11.52521 -11.50174 -11.35371 -11.25170 -10.97147 -10.77402 -10.33291 -10.21724 -10.13365 -9.18332 -8.40553 -6.00591 1.29336 1.34723 1.43234 1.46100 1.98211 2.04382 2.22740 2.64647 2.84941 3.15162 3.20213 3.55514 3.67127 3.76824 3.83828 3.87029 3.90401 4.01725 4.15301 4.17837 4.25416 4.29998 4.36015 4.41389 4.43946 4.55003 4.64460 4.69740 4.71622 4.75477 4.79838 4.85076 4.87826 4.90461 4.94389 4.96651 5.02573 5.09202 5.14994 5.20711 5.22111 5.27817 5.30279 5.43972 5.52048 5.54783 5.92376 6.05503 6.26298 6.52324 6.61417 6.90230 7.21203 7.41900 7.99391 8.77146 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.002447 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.953005 B =11438.871032 C =12481.649747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.071 0.929 4 N -0.703 5.703 5 C 0.543 3.457 6 O -0.588 6.588 7 C -0.174 4.174 8 C -0.110 4.110 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.076 4.076 12 H 0.078 0.922 13 C -0.107 4.107 14 C -0.109 4.109 15 C 0.051 3.949 16 N -0.532 5.532 17 C 0.053 3.947 18 C 0.452 3.548 19 O -0.600 6.600 20 N -0.595 5.595 21 C -0.323 4.323 22 H 0.056 0.944 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.963 3.037 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.234 1.234 29 C 0.063 3.937 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.388 0.612 50 H 0.278 0.722 51 H 0.061 0.939 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.130 -2.460 16.238 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.089 0.911 4 N -0.355 5.355 5 C 0.331 3.669 6 O -0.468 6.468 7 C -0.177 4.177 8 C -0.167 4.167 9 C -0.180 4.180 10 C -0.184 4.184 11 C -0.095 4.095 12 H 0.096 0.904 13 C -0.145 4.145 14 C -0.147 4.147 15 C -0.076 4.076 16 N -0.257 5.257 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.483 6.483 20 N -0.238 5.238 21 C -0.452 4.452 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.157 1.157 29 C -0.065 4.065 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.140 0.860 49 H 0.223 0.777 50 H 0.088 0.912 51 H 0.080 0.920 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 23.260 -2.593 16.748 28.779 hybrid contribution -0.692 1.253 -1.121 1.818 sum 22.568 -1.340 15.627 27.483 Atomic orbital electron populations 1.22134 0.96246 1.02127 1.01190 1.20716 0.93040 0.96630 0.84218 0.91110 1.45891 1.66358 1.14540 1.08688 1.20119 0.76103 0.86100 0.84548 1.90675 1.52508 1.18107 1.85559 1.21586 1.04525 1.03444 0.88195 1.21391 0.96242 0.95504 1.03525 1.23201 0.94589 1.02306 0.97949 1.23078 1.01832 0.97116 0.96423 1.21271 0.97084 0.99844 0.91327 0.90407 1.21619 0.92725 1.01190 0.98946 1.21575 1.00771 0.99709 0.92640 1.22287 0.85070 0.99704 1.00570 1.61425 1.07755 1.55941 1.00594 1.21834 0.90708 0.99645 0.95611 1.20889 0.89777 0.82884 0.82531 1.90526 1.75638 1.41150 1.41015 1.42075 1.07265 1.46230 1.28183 1.18979 0.83171 1.29697 1.13403 0.92596 1.26091 0.95640 0.99461 1.00319 1.69803 1.06403 1.45813 1.35652 0.85385 0.79349 0.78446 0.78468 1.18010 1.20186 1.15717 1.22083 1.00307 0.94373 0.89743 0.92241 0.93470 0.92724 0.74907 0.91115 0.89463 0.91169 0.90066 0.84918 0.85380 0.89932 0.92381 0.89979 0.91463 0.88867 0.89326 0.94223 0.91126 0.85956 0.77678 0.91244 0.92039 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 9.13 71.98 0.66 -4.13 16 2 C 0.16 4.04 2.16 44.99 0.10 4.14 16 3 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 4 N -0.70 -14.30 4.32 -442.55 -1.91 -16.22 16 5 C 0.54 12.81 7.36 87.66 0.64 13.45 16 6 O -0.59 -19.30 15.92 -3.02 -0.05 -19.35 16 7 C -0.17 -2.73 2.61 -52.93 -0.14 -2.86 16 8 C -0.11 -0.95 9.79 71.98 0.70 -0.25 16 9 C -0.14 -1.96 9.88 30.61 0.30 -1.66 16 10 C -0.15 -2.19 9.77 30.61 0.30 -1.89 16 11 C -0.08 -1.83 1.98 -10.74 -0.02 -1.85 16 12 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.11 -1.89 5.10 30.70 0.16 -1.74 16 14 C -0.11 -1.80 6.10 30.68 0.19 -1.61 16 15 C 0.05 1.02 5.46 86.33 0.47 1.49 16 16 N -0.53 -15.65 4.35 -900.94 -3.92 -19.57 16 17 C 0.05 1.65 5.45 85.56 0.47 2.12 16 18 C 0.45 20.39 7.31 87.66 0.64 21.03 16 19 O -0.60 -32.75 14.28 -3.05 -0.04 -32.80 16 20 N -0.60 -28.27 5.09 -306.99 -1.56 -29.84 16 21 C -0.32 -19.03 10.16 84.04 0.85 -18.18 16 22 H 0.06 3.92 7.39 -2.91 -0.02 3.89 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 24 N -0.94 -56.99 13.96 21.66 0.30 -56.69 16 25 Si 0.96 39.32 27.74 68.60 1.90 41.22 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 28 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 29 C 0.06 1.94 4.03 86.33 0.35 2.29 16 30 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.85 6.45 -2.39 -0.02 1.84 16 33 H 0.41 6.10 6.70 -92.71 -0.62 5.48 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.45 7.90 -2.39 -0.02 0.43 16 36 H 0.07 0.51 6.38 -2.38 -0.02 0.49 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 1.05 8.05 -2.39 -0.02 1.03 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.65 7.67 -2.39 -0.02 1.64 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.13 7.54 -2.39 -0.02 1.11 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.55 8.01 -2.39 -0.02 1.53 16 46 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 48 H 0.12 3.08 7.98 -2.39 -0.02 3.06 16 49 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 50 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 51 H 0.06 2.43 4.39 -2.38 -0.01 2.42 16 52 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -81.49 405.95 0.57 -80.92 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.29 Total: 42.42 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.14 Total: 9.88 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -7.09 Total: -122.31 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.09 Total: -52.14 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.22 kcal Total: -81.49 0.57 -80.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.003 kcal (2) G-P(sol) polarization free energy of solvation -81.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds