Wall clock time and date at job start Tue Mar 31 2020 20:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 N 1.46502 * 109.47288 * 239.99772 * 2 1 3 5 5 C 1.34774 * 119.99584 * 84.99937 * 4 2 1 6 6 O 1.21278 * 120.00399 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99739 * 179.97438 * 5 4 2 8 8 C 1.53001 * 115.54985 * 34.33676 * 7 5 4 9 9 C 1.52995 * 117.50551 * 248.62608 * 7 5 4 10 10 C 1.52997 * 117.50062 * 180.02562 * 7 5 4 11 11 C 1.52997 * 109.46909 * 119.99815 * 2 1 3 12 12 H 1.09005 * 109.50490 * 60.07603 * 11 2 1 13 13 C 1.53120 * 109.53669 * 180.17390 * 11 2 1 14 14 C 1.53123 * 109.16070 * 177.61204 * 13 11 2 15 15 C 1.53034 * 109.28182 * 302.35293 * 14 13 11 16 16 N 1.46839 * 109.52552 * 59.17780 * 15 14 13 17 17 C 1.46901 * 111.00222 * 174.16216 * 16 15 14 18 18 C 1.50701 * 109.46921 * 294.20814 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46986 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47457 * 119.99901 * 25 23 21 28 28 H 1.48501 * 109.47104 * 239.99973 * 25 23 21 29 29 C 1.46849 * 111.20047 * 298.25821 * 16 15 14 30 30 H 1.08994 * 109.46817 * 300.00454 * 1 2 3 31 31 H 1.09005 * 109.46732 * 60.00157 * 1 2 3 32 32 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00196 * 265.00451 * 4 2 1 34 34 H 1.09004 * 109.47626 * 85.58004 * 8 7 5 35 35 H 1.09000 * 109.47502 * 205.58307 * 8 7 5 36 36 H 1.09005 * 109.46902 * 325.58189 * 8 7 5 37 37 H 1.09005 * 117.49378 * 0.02562 * 9 7 5 38 38 H 1.08997 * 117.50465 * 145.02294 * 9 7 5 39 39 H 1.08997 * 117.50514 * 214.98066 * 10 7 5 40 40 H 1.09004 * 117.49771 * 359.97438 * 10 7 5 41 41 H 1.08993 * 109.52612 * 297.52565 * 13 11 2 42 42 H 1.08999 * 109.51658 * 57.65157 * 13 11 2 43 43 H 1.09006 * 109.49682 * 62.29343 * 14 13 11 44 44 H 1.09002 * 109.50070 * 182.36831 * 14 13 11 45 45 H 1.09006 * 109.45860 * 299.16276 * 15 14 13 46 46 H 1.09002 * 109.46096 * 179.19442 * 15 14 13 47 47 H 1.09002 * 109.47401 * 174.20842 * 17 16 15 48 48 H 1.09001 * 109.46874 * 54.20855 * 17 16 15 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 51 51 H 1.08991 * 109.46839 * 181.75791 * 29 16 15 52 52 H 1.09001 * 109.46094 * 301.73336 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1585 -2.4115 7 6 2.6500 -0.7285 -3.5874 8 6 2.2330 -2.1947 -3.7197 9 6 4.0318 -0.3364 -4.1144 10 6 2.7746 0.0896 -4.8742 11 6 2.0400 -0.7212 1.2493 12 1 1.6780 -1.7494 1.2491 13 6 3.5712 -0.7183 1.2530 14 6 4.0719 -1.3890 2.5352 15 6 3.5032 -0.6488 3.7480 16 7 2.0360 -0.6805 3.6986 17 6 1.4555 -0.1003 4.9169 18 6 1.7986 -0.9689 6.0997 19 8 2.4619 -1.9723 5.9430 20 7 1.3694 -0.6302 7.3316 21 6 1.6820 -1.4202 8.4076 22 1 2.2718 -2.3141 8.2680 23 6 1.2390 -1.0714 9.6775 24 7 0.5208 0.0160 9.8473 25 14 1.6655 -2.1473 11.1438 26 1 2.4779 -3.3042 10.6892 27 1 2.4414 -1.3542 12.1307 28 1 0.4155 -2.6392 11.7770 29 6 1.5302 -0.0004 2.4993 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 1.2522 -2.2523 -4.1918 35 1 2.9623 -2.7262 -4.3311 36 1 2.1874 -2.6501 -2.7304 37 1 4.5773 0.4351 -3.5710 38 1 4.6441 -1.1229 -4.5555 39 1 2.5595 -0.4165 -5.8153 40 1 2.4923 1.1416 -4.8310 41 1 3.9386 -1.2683 0.3867 42 1 3.9335 0.3089 1.2128 43 1 3.7419 -2.4277 2.5552 44 1 5.1609 -1.3525 2.5636 45 1 3.8448 0.3862 3.7346 46 1 3.8463 -1.1326 4.6625 47 1 0.3722 -0.0419 4.8112 48 1 1.8600 0.9001 5.0713 49 1 0.8393 0.1723 7.4568 50 1 0.2119 0.2597 10.7339 51 1 0.4404 -0.0132 2.5069 52 1 1.8811 1.0315 2.4919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731555348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:48 Heat of formation + Delta-G solvation = -56.329943 kcal Electronic energy + Delta-G solvation = -29728.278080 eV Core-core repulsion = 25727.903312 eV Total energy + Delta-G solvation = -4000.374768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63560 -39.38260 -37.99582 -37.02030 -35.67519 -33.93049 -32.91016 -32.04439 -31.19063 -29.22723 -28.65545 -27.48984 -24.93019 -24.55443 -23.19355 -22.86556 -22.58561 -20.92388 -20.18806 -19.34570 -19.10161 -17.84710 -17.32245 -16.58551 -15.92043 -15.60625 -15.38101 -15.00566 -14.78179 -14.61723 -14.37795 -14.11723 -14.08566 -13.73241 -13.55122 -13.48892 -13.37924 -12.98801 -12.91296 -12.84329 -12.64962 -12.49778 -12.03729 -11.87963 -11.68419 -11.59824 -11.48047 -11.38358 -11.04477 -10.98395 -10.85954 -10.63328 -10.43557 -10.34997 -10.30463 -10.24836 -10.21106 -9.94414 -9.46565 -9.27433 -8.41200 -7.96576 -7.81633 -6.41064 -3.81776 2.24693 2.83468 3.16453 3.26989 3.34024 3.43229 3.91266 3.97375 4.20102 4.23369 4.32385 4.42591 4.52578 4.60277 4.73491 4.82017 5.05325 5.16182 5.17467 5.21782 5.22845 5.26027 5.27882 5.29536 5.34034 5.39857 5.48254 5.51174 5.56787 5.65492 5.66330 5.71017 5.75241 5.77712 5.80750 5.86497 5.96945 6.00386 6.03665 6.14523 6.16205 6.29297 6.31494 6.49115 6.57336 7.27055 7.33495 7.46265 7.56069 8.00095 8.07663 8.62837 9.19069 9.55709 10.07483 10.76779 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.001920 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.207388 B =14581.153152 C =14940.802111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.717 5.717 5 C 0.551 3.449 6 O -0.541 6.541 7 C -0.170 4.170 8 C -0.114 4.114 9 C -0.149 4.149 10 C -0.145 4.145 11 C -0.089 4.089 12 H 0.086 0.914 13 C -0.113 4.113 14 C -0.112 4.112 15 C 0.051 3.949 16 N -0.513 5.513 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.062 3.938 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.020 0.980 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.078 0.922 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -0.205 -26.310 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.105 0.895 4 N -0.368 5.368 5 C 0.337 3.663 6 O -0.418 6.418 7 C -0.173 4.173 8 C -0.171 4.171 9 C -0.187 4.187 10 C -0.182 4.182 11 C -0.109 4.109 12 H 0.104 0.896 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.077 4.077 16 N -0.238 5.238 17 C -0.085 4.085 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.066 4.066 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.121 0.879 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.287 -0.448 -26.266 26.475 hybrid contribution 0.070 0.459 1.022 1.123 sum 3.357 0.011 -25.244 25.466 Atomic orbital electron populations 1.22230 0.95036 1.02429 1.02619 1.20996 0.94134 0.97285 0.83312 0.89533 1.46023 1.67172 1.14203 1.09420 1.19446 0.76880 0.86468 0.83507 1.90694 1.50200 1.16007 1.84948 1.21520 1.03499 0.97277 0.95003 1.21352 1.02035 0.91237 1.02488 1.23091 0.89446 1.03503 1.02630 1.23015 1.00520 1.01165 0.93511 1.21434 0.96067 1.00751 0.92621 0.89590 1.21625 0.94513 1.00795 0.98122 1.21535 0.99342 1.00622 0.93495 1.22271 0.86809 0.97902 1.00686 1.61466 1.07439 1.54551 1.00298 1.21835 1.00349 0.96020 0.90293 1.19743 0.85430 0.88054 0.83760 1.90480 1.42768 1.28126 1.84740 1.41883 1.47797 1.25008 1.05515 1.19740 1.31318 1.06749 0.84876 0.87869 1.25260 0.96760 0.96982 0.99032 1.69623 1.36413 1.24263 1.24051 0.85806 0.78204 0.79728 0.80640 1.19239 1.20808 1.20775 1.22102 1.00001 0.94978 0.89545 0.91060 0.92306 0.92198 0.76431 0.91542 0.91404 0.91843 0.88321 0.87761 0.87977 0.87463 0.92202 0.92442 0.90917 0.91895 0.96203 0.87863 0.89378 0.93548 0.77507 0.91955 0.90371 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.13 37.16 0.34 -1.25 16 2 C 0.15 1.47 2.16 -67.93 -0.15 1.32 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 N -0.72 -6.31 4.33 -53.80 -0.23 -6.54 16 5 C 0.55 5.75 7.36 -10.99 -0.08 5.67 16 6 O -0.54 -7.72 15.92 5.56 0.09 -7.63 16 7 C -0.17 -1.29 2.62 -155.66 -0.41 -1.69 16 8 C -0.11 -0.60 9.79 37.16 0.36 -0.24 16 9 C -0.15 -0.98 9.88 -26.76 -0.26 -1.24 16 10 C -0.14 -1.03 9.76 -26.76 -0.26 -1.29 16 11 C -0.09 -0.95 1.98 -90.54 -0.18 -1.13 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.11 -1.21 5.09 -26.61 -0.14 -1.34 16 14 C -0.11 -1.45 6.09 -26.65 -0.16 -1.62 16 15 C 0.05 0.82 5.10 -3.84 -0.02 0.80 16 16 N -0.51 -8.37 4.40 -236.11 -1.04 -9.41 16 17 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.39 7.46 -10.98 -0.08 10.31 16 19 O -0.58 -15.28 13.90 5.55 0.08 -15.20 16 20 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.06 0.79 4.37 -3.83 -0.02 0.77 16 30 H 0.07 0.66 6.45 -51.93 -0.33 0.32 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.40 2.74 6.71 -40.82 -0.27 2.46 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.28 7.90 -51.93 -0.41 -0.13 16 36 H 0.06 0.29 6.38 -51.93 -0.33 -0.04 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.06 0.55 7.55 -51.93 -0.39 0.16 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 2.05 5.78 -51.93 -0.30 1.75 16 47 H 0.09 1.42 7.99 -51.93 -0.41 1.00 16 48 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.08 0.92 6.35 -51.93 -0.33 0.59 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 408.63 15.07 6.16 6.16 Total: -1.00 -32.45 408.63 -9.53 -41.98 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -8.90 Total: 10.83 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.95 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.60 Total: -54.08 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.45 -9.53 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.355 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds