Wall clock time and date at job start Tue Mar 31 2020 20:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 N 1.46502 * 109.47288 * 239.99772 * 2 1 3 5 5 C 1.34774 * 119.99584 * 84.99937 * 4 2 1 6 6 O 1.21278 * 120.00399 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99739 * 179.97438 * 5 4 2 8 8 C 1.53001 * 115.54985 * 34.33676 * 7 5 4 9 9 C 1.52995 * 117.50551 * 248.62608 * 7 5 4 10 10 C 1.52997 * 117.50062 * 180.02562 * 7 5 4 11 11 C 1.52997 * 109.46909 * 119.99815 * 2 1 3 12 12 H 1.09005 * 109.50490 * 60.07603 * 11 2 1 13 13 C 1.53120 * 109.53669 * 180.17390 * 11 2 1 14 14 C 1.53123 * 109.16070 * 177.61204 * 13 11 2 15 15 C 1.53034 * 109.28182 * 302.35293 * 14 13 11 16 16 N 1.46839 * 109.52552 * 59.17780 * 15 14 13 17 17 C 1.46901 * 111.00222 * 174.16216 * 16 15 14 18 18 C 1.50701 * 109.46921 * 294.20814 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46986 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47457 * 119.99901 * 25 23 21 28 28 H 1.48501 * 109.47104 * 239.99973 * 25 23 21 29 29 C 1.46849 * 111.20047 * 298.25821 * 16 15 14 30 30 H 1.08994 * 109.46817 * 300.00454 * 1 2 3 31 31 H 1.09005 * 109.46732 * 60.00157 * 1 2 3 32 32 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00196 * 265.00451 * 4 2 1 34 34 H 1.09004 * 109.47626 * 85.58004 * 8 7 5 35 35 H 1.09000 * 109.47502 * 205.58307 * 8 7 5 36 36 H 1.09005 * 109.46902 * 325.58189 * 8 7 5 37 37 H 1.09005 * 117.49378 * 0.02562 * 9 7 5 38 38 H 1.08997 * 117.50465 * 145.02294 * 9 7 5 39 39 H 1.08997 * 117.50514 * 214.98066 * 10 7 5 40 40 H 1.09004 * 117.49771 * 359.97438 * 10 7 5 41 41 H 1.08993 * 109.52612 * 297.52565 * 13 11 2 42 42 H 1.08999 * 109.51658 * 57.65157 * 13 11 2 43 43 H 1.09006 * 109.49682 * 62.29343 * 14 13 11 44 44 H 1.09002 * 109.50070 * 182.36831 * 14 13 11 45 45 H 1.09006 * 109.45860 * 299.16276 * 15 14 13 46 46 H 1.09002 * 109.46096 * 179.19442 * 15 14 13 47 47 H 1.09002 * 109.47401 * 174.20842 * 17 16 15 48 48 H 1.09001 * 109.46874 * 54.20855 * 17 16 15 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 51 51 H 1.08991 * 109.46839 * 181.75791 * 29 16 15 52 52 H 1.09001 * 109.46094 * 301.73336 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1585 -2.4115 7 6 2.6500 -0.7285 -3.5874 8 6 2.2330 -2.1947 -3.7197 9 6 4.0318 -0.3364 -4.1144 10 6 2.7746 0.0896 -4.8742 11 6 2.0400 -0.7212 1.2493 12 1 1.6780 -1.7494 1.2491 13 6 3.5712 -0.7183 1.2530 14 6 4.0719 -1.3890 2.5352 15 6 3.5032 -0.6488 3.7480 16 7 2.0360 -0.6805 3.6986 17 6 1.4555 -0.1003 4.9169 18 6 1.7986 -0.9689 6.0997 19 8 2.4619 -1.9723 5.9430 20 7 1.3694 -0.6302 7.3316 21 6 1.6820 -1.4202 8.4076 22 1 2.2718 -2.3141 8.2680 23 6 1.2390 -1.0714 9.6775 24 7 0.5208 0.0160 9.8473 25 14 1.6655 -2.1473 11.1438 26 1 2.4779 -3.3042 10.6892 27 1 2.4414 -1.3542 12.1307 28 1 0.4155 -2.6392 11.7770 29 6 1.5302 -0.0004 2.4993 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 1.2522 -2.2523 -4.1918 35 1 2.9623 -2.7262 -4.3311 36 1 2.1874 -2.6501 -2.7304 37 1 4.5773 0.4351 -3.5710 38 1 4.6441 -1.1229 -4.5555 39 1 2.5595 -0.4165 -5.8153 40 1 2.4923 1.1416 -4.8310 41 1 3.9386 -1.2683 0.3867 42 1 3.9335 0.3089 1.2128 43 1 3.7419 -2.4277 2.5552 44 1 5.1609 -1.3525 2.5636 45 1 3.8448 0.3862 3.7346 46 1 3.8463 -1.1326 4.6625 47 1 0.3722 -0.0419 4.8112 48 1 1.8600 0.9001 5.0713 49 1 0.8393 0.1723 7.4568 50 1 0.2119 0.2597 10.7339 51 1 0.4404 -0.0132 2.5069 52 1 1.8811 1.0315 2.4919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731555348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:47 Heat of formation + Delta-G solvation = -78.395123 kcal Electronic energy + Delta-G solvation = -29729.234898 eV Core-core repulsion = 25727.903312 eV Total energy + Delta-G solvation = -4001.331586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45055 -40.65283 -39.49472 -37.81224 -36.71920 -35.86734 -34.09495 -33.23139 -32.92445 -30.01040 -29.29328 -28.97803 -26.50925 -25.65835 -24.14663 -23.74959 -23.37894 -21.87445 -21.13600 -20.89906 -20.17248 -19.83651 -18.00619 -17.82328 -17.25285 -16.79679 -16.53064 -16.27258 -16.10348 -15.75532 -15.69680 -15.34983 -15.06886 -14.92367 -14.80257 -14.61739 -14.09897 -14.02658 -13.92365 -13.61861 -13.51362 -13.43249 -13.37927 -13.19310 -13.00592 -12.65302 -12.58301 -12.49799 -12.39607 -12.37234 -12.11518 -11.90629 -11.61917 -11.55609 -11.49769 -11.32399 -11.24938 -10.94974 -10.75508 -10.22657 -10.08369 -9.98300 -9.18634 -8.45683 -5.94092 1.36735 1.41805 1.49445 1.55955 2.06770 2.08437 2.29384 2.77700 2.86612 3.21172 3.38864 3.58125 3.68173 3.80186 3.81762 3.88296 3.91969 4.03111 4.16479 4.27327 4.35206 4.35696 4.39192 4.44980 4.49920 4.54974 4.64623 4.71342 4.73408 4.79501 4.81206 4.85142 4.88787 4.91307 4.96526 4.98500 5.03403 5.06032 5.17889 5.22329 5.28339 5.29365 5.30769 5.41941 5.45423 5.54983 5.91655 6.11076 6.26311 6.55601 6.62013 7.14358 7.24737 7.58101 8.13851 8.72006 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.001920 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.207388 B =14581.153152 C =14940.802111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.069 0.931 4 N -0.706 5.706 5 C 0.545 3.455 6 O -0.587 6.587 7 C -0.176 4.176 8 C -0.111 4.111 9 C -0.140 4.140 10 C -0.150 4.150 11 C -0.078 4.078 12 H 0.089 0.911 13 C -0.105 4.105 14 C -0.105 4.105 15 C 0.051 3.949 16 N -0.527 5.527 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.611 6.611 20 N -0.576 5.576 21 C -0.329 4.329 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.271 1.271 29 C 0.061 3.939 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.060 0.940 47 H 0.111 0.889 48 H 0.062 0.938 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.090 0.910 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -1.042 -27.703 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.087 0.913 4 N -0.357 5.357 5 C 0.333 3.667 6 O -0.467 6.467 7 C -0.179 4.179 8 C -0.168 4.168 9 C -0.177 4.177 10 C -0.188 4.188 11 C -0.098 4.098 12 H 0.107 0.893 13 C -0.143 4.143 14 C -0.143 4.143 15 C -0.077 4.077 16 N -0.252 5.252 17 C -0.075 4.075 18 C 0.230 3.770 19 O -0.497 6.497 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.097 0.903 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.066 4.066 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.078 0.922 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.342 -1.294 -27.671 27.903 hybrid contribution 0.068 0.747 1.419 1.605 sum 3.410 -0.548 -26.253 26.479 Atomic orbital electron populations 1.22190 0.94594 1.02923 1.02209 1.20795 0.94362 0.96344 0.83414 0.91299 1.45925 1.66426 1.14678 1.08706 1.19996 0.76119 0.86049 0.84520 1.90674 1.52255 1.18066 1.85705 1.21585 1.04315 0.98375 0.93653 1.21386 1.02543 0.89501 1.03348 1.23173 0.89078 1.03643 1.01786 1.23054 1.01166 1.00150 0.94388 1.21319 0.95972 1.00618 0.91868 0.89278 1.21570 0.94446 1.00700 0.97561 1.21475 0.99968 0.99694 0.93175 1.22178 0.87112 0.98098 1.00271 1.61453 1.07442 1.55472 1.00803 1.21723 1.01847 0.95195 0.88698 1.20737 0.83718 0.87951 0.84559 1.90459 1.43885 1.29925 1.85452 1.41954 1.48484 1.25083 1.05858 1.19685 1.32633 1.07047 0.86515 0.90265 1.26038 0.96232 0.98154 1.01034 1.69685 1.36561 1.25077 1.24993 0.84870 0.78233 0.77920 0.77312 1.19743 1.19719 1.19661 1.22209 1.00750 0.95122 0.88554 0.90605 0.93607 0.91199 0.74972 0.91540 0.89587 0.91134 0.89620 0.85173 0.85799 0.89793 0.90038 0.92640 0.91923 0.90740 0.95695 0.92150 0.87117 0.92015 0.77115 0.91389 0.89136 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.13 71.98 0.66 -2.20 16 2 C 0.16 2.87 2.16 44.99 0.10 2.96 16 3 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 4 N -0.71 -11.17 4.33 -442.53 -1.92 -13.09 16 5 C 0.55 10.88 7.36 87.66 0.64 11.52 16 6 O -0.59 -16.87 15.92 -3.02 -0.05 -16.92 16 7 C -0.18 -2.36 2.62 -52.93 -0.14 -2.49 16 8 C -0.11 -0.85 9.79 71.98 0.70 -0.14 16 9 C -0.14 -1.55 9.88 30.58 0.30 -1.25 16 10 C -0.15 -1.96 9.76 30.58 0.30 -1.66 16 11 C -0.08 -1.51 1.98 -10.74 -0.02 -1.53 16 12 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 13 C -0.11 -2.03 5.09 30.68 0.16 -1.88 16 14 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16 15 C 0.05 1.65 5.10 86.33 0.44 2.09 16 16 N -0.53 -16.75 4.40 -900.93 -3.96 -20.71 16 17 C 0.06 1.98 5.45 85.56 0.47 2.44 16 18 C 0.44 21.11 7.46 87.66 0.65 21.76 16 19 O -0.61 -33.45 13.90 -3.07 -0.04 -33.50 16 20 N -0.58 -29.72 5.29 -306.98 -1.62 -31.34 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.02 -0.81 5.50 84.92 0.47 -0.35 16 24 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 C 0.06 1.44 4.37 86.33 0.38 1.81 16 30 H 0.08 1.27 6.45 -2.39 -0.02 1.25 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.41 4.54 6.71 -92.71 -0.62 3.91 16 34 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.09 0.37 7.90 -2.39 -0.02 0.36 16 36 H 0.07 0.43 6.38 -2.38 -0.02 0.42 16 37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.13 0.77 8.05 -2.39 -0.02 0.75 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.50 7.67 -2.38 -0.02 1.48 16 41 H 0.08 1.26 7.55 -2.39 -0.02 1.24 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.06 2.48 5.78 -2.39 -0.01 2.47 16 47 H 0.11 3.38 7.99 -2.39 -0.02 3.36 16 48 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 49 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 50 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 51 H 0.09 1.91 6.35 -2.39 -0.02 1.89 16 52 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -72.50 408.63 0.40 -72.11 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.43 Total: 37.32 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.11 Total: 10.75 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -7.22 Total: -114.91 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.50 0.40 -72.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.290 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds