Wall clock time and date at job start Tue Mar 31 2020 20:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47111 * 239.99810 * 2 1 3 5 5 C 1.53000 * 109.47363 * 175.00164 * 4 2 1 6 6 N 1.46495 * 109.47218 * 180.02562 * 5 4 2 7 7 C 1.34788 * 119.99805 * 180.02562 * 6 5 4 8 8 O 1.21608 * 120.00000 * 359.97438 * 7 6 5 9 9 C 1.47101 * 119.99714 * 179.97438 * 7 6 5 10 10 C 1.32997 * 119.99648 * 186.98410 * 9 7 6 11 11 C 1.51269 * 120.84982 * 12.17523 * 10 9 7 12 12 C 1.53668 * 108.30748 * 128.61925 * 11 10 9 13 13 C 1.52959 * 109.32084 * 54.86295 * 12 11 10 14 14 C 1.52960 * 109.81783 * 296.27070 * 13 12 11 15 15 C 1.51267 * 120.84781 * 192.46377 * 10 9 7 16 16 N 1.46904 * 109.47155 * 119.99815 * 2 1 3 17 17 C 1.46903 * 111.00065 * 274.99920 * 16 2 1 18 18 C 1.50693 * 109.47124 * 180.02562 * 17 16 2 19 19 O 1.21291 * 120.00311 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99773 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99834 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00122 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00106 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99486 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00160 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47414 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47028 * 119.99942 * 25 23 21 28 28 H 1.48505 * 109.47406 * 240.00066 * 25 23 21 29 29 H 1.08999 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46762 * 300.00036 * 1 2 3 31 31 H 1.08995 * 109.46962 * 60.00192 * 1 2 3 32 32 H 1.09000 * 109.47460 * 54.99838 * 4 2 1 33 33 H 1.08999 * 109.47210 * 294.99777 * 4 2 1 34 34 H 1.09000 * 109.47098 * 59.99453 * 5 4 2 35 35 H 1.09004 * 109.46890 * 300.00349 * 5 4 2 36 36 H 0.96992 * 120.00337 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.00318 * 6.69799 * 9 7 6 38 38 H 1.08993 * 109.63057 * 248.39385 * 11 10 9 39 39 H 1.08999 * 109.62332 * 8.96840 * 11 10 9 40 40 H 1.08996 * 109.63208 * 294.84428 * 12 11 10 41 41 H 1.09000 * 109.42698 * 174.75463 * 12 11 10 42 42 H 1.08995 * 109.41525 * 176.16464 * 13 12 11 43 43 H 1.09004 * 109.41656 * 56.37306 * 13 12 11 44 44 H 1.08998 * 109.48131 * 303.61484 * 14 13 12 45 45 H 1.09003 * 109.48240 * 183.58140 * 14 13 12 46 46 H 1.09001 * 109.62695 * 351.03484 * 15 10 9 47 47 H 1.08998 * 109.62927 * 111.60809 * 15 10 9 48 48 H 1.00895 * 111.00389 * 38.95685 * 16 2 1 49 49 H 1.09004 * 109.47055 * 300.00357 * 17 16 2 50 50 H 1.09002 * 109.46891 * 59.99570 * 17 16 2 51 51 H 0.97000 * 120.00366 * 0.02562 * 20 18 17 52 52 H 0.97002 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 7 4.0531 -1.3035 -2.5101 7 6 5.3741 -1.3397 -2.7753 8 8 6.1606 -0.7990 -2.0217 9 6 5.8644 -2.0331 -3.9764 10 6 7.1713 -2.1897 -4.1669 11 6 8.1561 -1.9149 -3.0521 12 6 9.0779 -3.1362 -2.9103 13 6 9.7258 -3.4408 -4.2620 14 6 8.6497 -3.8304 -5.2769 15 6 7.7114 -2.6408 -5.5059 16 7 2.0197 -0.6925 1.1995 17 6 2.0825 0.2227 2.3469 18 6 2.5886 -0.5214 3.5557 19 8 2.8698 -1.6981 3.4698 20 7 2.7297 0.1210 4.7321 21 6 3.1906 -0.5557 5.8317 22 1 3.4402 -1.6037 5.7554 23 6 3.3356 0.1064 7.0447 24 7 3.0305 1.3812 7.1379 25 14 3.9629 -0.8159 8.5431 26 1 4.2324 -2.2296 8.1772 27 1 5.2164 -0.1823 9.0254 28 1 2.9391 -0.7688 9.6178 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2619 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0728 -0.4259 35 1 3.8532 0.4369 -1.3573 36 1 3.4258 -1.7350 -3.1110 37 1 5.1630 -2.4192 -4.7012 38 1 8.7477 -1.0324 -3.2953 39 1 7.6166 -1.7517 -2.1191 40 1 8.4961 -3.9981 -2.5836 41 1 9.8538 -2.9215 -2.1755 42 1 10.4314 -4.2637 -4.1483 43 1 10.2557 -2.5570 -4.6172 44 1 8.0781 -4.6759 -4.8941 45 1 9.1221 -4.1076 -6.2193 46 1 6.8862 -2.9442 -6.1502 47 1 8.2626 -1.8243 -5.9723 48 1 1.4497 -1.4979 1.4101 49 1 2.7589 1.0463 2.1182 50 1 1.0871 0.6164 2.5525 51 1 2.5052 1.0622 4.8008 52 1 3.1320 1.8436 7.9845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731723084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:51 Heat of formation + Delta-G solvation = -79.964212 kcal Electronic energy + Delta-G solvation = -28479.589866 eV Core-core repulsion = 24478.190240 eV Total energy + Delta-G solvation = -4001.399626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05414 -38.52750 -38.14929 -37.02362 -34.79163 -33.85521 -32.92812 -31.54443 -31.20314 -31.05292 -29.08802 -26.93505 -26.26483 -24.09967 -23.35487 -23.10217 -21.61166 -20.94189 -20.32495 -19.23617 -18.76718 -17.85343 -16.93817 -16.14146 -16.02079 -15.71426 -15.31809 -15.08393 -14.83208 -14.62846 -14.52656 -14.33718 -13.99307 -13.78258 -13.67631 -13.61125 -13.18364 -13.02838 -12.83506 -12.74929 -12.52360 -12.14498 -12.11923 -11.88851 -11.54501 -11.50484 -11.37702 -11.29709 -11.19849 -11.12925 -11.02182 -10.87326 -10.83845 -10.55371 -10.31441 -10.18835 -9.49801 -9.48303 -9.12918 -8.88154 -8.42235 -8.00039 -7.91570 -6.38273 -3.78738 1.21755 3.19114 3.21767 3.28007 3.29395 3.36991 3.95248 4.12591 4.36026 4.39574 4.43171 4.62010 4.72283 4.75091 4.88203 4.98308 5.05869 5.11569 5.14110 5.16449 5.22414 5.30102 5.30859 5.34678 5.35823 5.44774 5.56670 5.58507 5.65097 5.70897 5.73714 5.79723 5.80479 5.82554 5.87035 6.02467 6.05227 6.10791 6.12239 6.13896 6.28538 6.32905 6.34029 6.47728 6.65399 7.26304 7.54396 7.58979 7.70425 8.10500 8.30004 8.65250 9.21835 9.58518 10.10074 10.79640 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.002041 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.975833 B =13717.129466 C =15888.200195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.079 0.921 4 C -0.115 4.115 5 C 0.122 3.878 6 N -0.728 5.728 7 C 0.543 3.457 8 O -0.535 6.535 9 C -0.235 4.235 10 C -0.020 4.020 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.124 4.124 14 C -0.117 4.117 15 C -0.093 4.093 16 N -0.662 5.662 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.350 0.650 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -4.307 -27.275 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.001 4.001 6 N -0.378 5.378 7 C 0.333 3.667 8 O -0.415 6.415 9 C -0.255 4.255 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.155 4.155 15 C -0.130 4.130 16 N -0.294 5.294 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.230 0.770 37 H 0.142 0.858 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.169 0.831 49 H 0.104 0.896 50 H 0.061 0.939 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.087 -4.508 -26.754 27.437 hybrid contribution -1.266 0.149 0.677 1.443 sum 2.821 -4.359 -26.077 26.589 Atomic orbital electron populations 1.22514 0.97220 1.02253 1.02181 1.21506 0.92375 0.98169 0.90601 0.90236 1.21742 0.94696 1.01632 0.97259 1.21375 0.93754 0.97186 0.87770 1.45989 1.07376 1.57122 1.27305 1.18554 0.82190 0.80546 0.85390 1.90651 1.54184 1.46375 1.50270 1.22301 0.96127 1.07421 0.99696 1.22729 0.94196 0.89869 0.95347 1.21704 0.96667 0.97486 1.00065 1.21682 0.98751 0.98218 0.96899 1.21572 0.97649 1.01369 0.95540 1.21576 0.96972 0.97528 0.99397 1.20973 0.99589 0.98749 0.93705 1.60199 1.57569 1.09093 1.02587 1.21699 0.99839 0.95760 0.90914 1.19830 0.85058 0.88235 0.84178 1.90524 1.55230 1.16326 1.84604 1.41873 1.57838 1.12463 1.08004 1.19751 1.39726 0.96459 0.86749 0.87896 1.25264 0.97745 0.95797 0.99263 1.69625 1.48843 1.08870 1.27046 0.85801 0.78231 0.79647 0.80673 1.19230 1.20742 1.20823 0.92325 0.92360 0.92250 0.91595 0.91188 0.89305 0.92081 0.77045 0.85802 0.90656 0.85888 0.91953 0.91426 0.91969 0.91891 0.91690 0.91629 0.90899 0.89809 0.83058 0.89620 0.93893 0.77489 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.16 37.16 0.34 -1.46 16 2 C 0.08 0.97 2.59 -67.71 -0.18 0.80 16 3 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.11 -1.13 5.00 -26.73 -0.13 -1.26 16 5 C 0.12 1.52 5.56 -4.04 -0.02 1.49 16 6 N -0.73 -7.80 5.55 -61.49 -0.34 -8.14 16 7 C 0.54 6.96 7.62 -12.66 -0.10 6.87 16 8 O -0.53 -8.93 13.22 5.27 0.07 -8.86 16 9 C -0.23 -2.28 9.65 -37.81 -0.36 -2.64 16 10 C -0.02 -0.19 5.38 -100.61 -0.54 -0.73 16 11 C -0.12 -1.36 5.32 -27.26 -0.14 -1.50 16 12 C -0.12 -1.09 5.95 -26.40 -0.16 -1.24 16 13 C -0.12 -0.89 5.81 -26.77 -0.16 -1.04 16 14 C -0.12 -0.75 5.94 -26.63 -0.16 -0.91 16 15 C -0.09 -0.63 6.04 -27.49 -0.17 -0.79 16 16 N -0.66 -10.36 5.33 -107.99 -0.58 -10.94 16 17 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 18 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 19 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 20 N -0.57 -14.59 5.29 -10.97 -0.06 -14.65 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 30 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.44 7.75 -51.93 -0.40 1.04 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 2.95 8.46 -40.82 -0.35 2.61 16 37 H 0.12 0.84 7.96 -52.49 -0.42 0.43 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.76 4.79 -52.87 -0.25 1.51 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.40 7.92 -51.93 -0.41 -0.01 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.35 5.69 8.17 -39.29 -0.32 5.37 16 49 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 50 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 51 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 417.06 15.07 6.29 6.29 Total: -1.00 -33.56 417.06 -10.04 -43.60 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -9.08 Total: 15.67 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.13 Total: 0.81 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.25 Total: -57.95 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.16 Total: -24.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.56 -10.04 -43.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731723084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.361 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds