Wall clock time and date at job start Tue Mar 31 2020 20:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46738 * 2 1 4 4 C 1.53001 * 109.47433 * 239.99709 * 2 1 3 5 5 C 1.50702 * 109.46822 * 65.00199 * 4 2 1 6 6 O 1.21279 * 120.00319 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99814 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47092 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.28726 * 305.69948 * 9 8 7 11 11 C 1.54262 * 110.32554 * 67.82923 * 9 8 7 12 12 C 1.54375 * 105.06151 * 118.99330 * 11 9 8 13 13 N 1.48556 * 104.59344 * 23.85777 * 12 11 9 14 14 C 1.46903 * 111.00051 * 200.95769 * 13 12 11 15 15 C 1.50700 * 109.47029 * 290.12426 * 14 13 12 16 16 O 1.21297 * 119.99891 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00452 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00565 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99472 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00103 * 180.02562 * 18 17 15 21 21 N 1.31420 * 120.00345 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47005 * 60.00043 * 22 20 18 24 24 H 1.48499 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47303 * 300.00012 * 22 20 18 26 26 C 1.48821 * 104.23766 * 320.48498 * 13 12 11 27 27 C 1.53001 * 109.46981 * 119.99345 * 2 1 3 28 28 C 1.52994 * 117.49941 * 248.62252 * 27 2 1 29 29 C 1.53001 * 60.00333 * 252.51187 * 28 27 2 30 30 H 1.08998 * 109.47348 * 300.00144 * 1 2 3 31 31 H 1.09003 * 109.47489 * 60.00757 * 1 2 3 32 32 H 1.09007 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.46864 * 305.00090 * 4 2 1 34 34 H 1.09003 * 109.47210 * 184.99778 * 4 2 1 35 35 H 0.97007 * 120.00142 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.46835 * 59.99808 * 8 7 5 37 37 H 1.09003 * 109.46900 * 299.99787 * 8 7 5 38 38 H 1.08997 * 110.32128 * 237.89756 * 11 9 8 39 39 H 1.09004 * 110.32088 * 359.97438 * 11 9 8 40 40 H 1.09009 * 110.40529 * 142.62988 * 12 11 9 41 41 H 1.08993 * 110.41526 * 264.95475 * 12 11 9 42 42 H 1.09001 * 109.46764 * 50.12109 * 14 13 12 43 43 H 1.08996 * 109.47572 * 170.12319 * 14 13 12 44 44 H 0.97008 * 119.99370 * 359.97438 * 17 15 14 45 45 H 0.96996 * 120.00147 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.45345 * 280.77851 * 26 13 12 47 47 H 1.09001 * 110.49959 * 158.24614 * 26 13 12 48 48 H 1.08999 * 115.54894 * 34.34237 * 27 2 1 49 49 H 1.08995 * 117.50473 * 0.02562 * 28 27 2 50 50 H 1.09005 * 117.49677 * 145.02343 * 28 27 2 51 51 H 1.08997 * 117.50248 * 252.50958 * 29 28 27 52 52 H 1.08999 * 117.51304 * 107.48205 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3634 7 7 1.9846 -0.3920 -3.7001 8 6 1.5966 0.3643 -4.8933 9 6 2.1068 -0.3569 -6.1425 10 1 3.1800 -0.5316 -6.0662 11 6 1.3588 -1.6925 -6.3332 12 6 0.6491 -1.5635 -7.6981 13 7 1.4417 -0.5478 -8.4376 14 6 0.6510 0.0499 -9.5218 15 6 0.4319 -0.9731 -10.6065 16 8 0.8899 -2.0900 -10.4882 17 7 -0.2728 -0.6470 -11.7081 18 6 -0.4726 -1.5778 -12.6947 19 1 -0.0648 -2.5723 -12.5893 20 6 -1.1987 -1.2413 -13.8305 21 7 -1.6945 -0.0310 -13.9589 22 14 -1.4702 -2.5093 -15.1750 23 1 -2.1994 -3.6757 -14.6155 24 1 -2.2701 -1.9054 -16.2708 25 1 -0.1576 -2.9552 -15.7074 26 6 1.7864 0.4689 -7.4069 27 6 2.0399 -0.7211 1.2493 28 6 2.7418 0.1228 2.3151 29 6 3.5550 -0.8279 1.4344 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6054 -1.7198 -1.2950 34 1 3.1264 -0.7995 -1.2055 35 1 2.4885 -1.2159 -3.7907 36 1 2.0312 1.3629 -4.8477 37 1 0.5102 0.4424 -4.9366 38 1 2.0648 -2.5227 -6.3504 39 1 0.6284 -1.8344 -5.5365 40 1 0.6653 -2.5168 -8.2265 41 1 -0.3772 -1.2224 -7.5623 42 1 -0.3125 0.3770 -9.1310 43 1 1.1862 0.9060 -9.9325 44 1 -0.6394 0.2462 -11.8025 45 1 -2.2011 0.2039 -14.7520 46 1 0.9385 1.1294 -7.2249 47 1 2.6587 1.0450 -7.7157 48 1 1.4311 -1.5585 1.5903 49 1 2.8399 1.1919 2.1266 50 1 2.5945 -0.1591 3.3577 51 1 3.9428 -1.7352 1.8975 52 1 4.1884 -0.3847 0.6660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731860620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:07 Heat of formation + Delta-G solvation = -58.700460 kcal Electronic energy + Delta-G solvation = -28491.602487 eV Core-core repulsion = 24491.124926 eV Total energy + Delta-G solvation = -4000.477561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33974 -39.25205 -38.21688 -37.61516 -35.18285 -33.87499 -33.48632 -32.09412 -31.16974 -29.53738 -28.37686 -26.98993 -25.07132 -24.05835 -23.53403 -22.74960 -21.45089 -20.65513 -20.37521 -19.87232 -19.07288 -17.84783 -17.31543 -16.57255 -16.32666 -15.98275 -15.65246 -15.34627 -15.26443 -14.85280 -14.51120 -14.39905 -14.12928 -13.79706 -13.70900 -13.38413 -13.28848 -13.13560 -12.68494 -12.38558 -12.27716 -11.99906 -11.93602 -11.85190 -11.67822 -11.58756 -11.47431 -11.33576 -11.19862 -11.12704 -10.92640 -10.82845 -10.62097 -10.51794 -10.43009 -10.38430 -10.20329 -9.92194 -9.47139 -9.29319 -8.50145 -8.02201 -7.93209 -6.40271 -3.81184 2.40863 2.87968 3.20741 3.26364 3.30638 3.38091 3.92012 4.02713 4.17846 4.24547 4.38298 4.46497 4.54499 4.58799 4.67979 4.70111 4.74462 4.85582 5.07592 5.09898 5.12584 5.23161 5.24163 5.26263 5.29477 5.34764 5.40623 5.44752 5.48032 5.52425 5.64184 5.68988 5.70688 5.74295 5.77723 5.79955 5.82715 5.90837 6.00297 6.05894 6.11049 6.18151 6.26644 6.29083 6.44268 7.11090 7.21321 7.24098 7.56038 7.98946 8.07286 8.63399 9.19421 9.55971 10.08043 10.77463 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.001514 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.668532 B =18490.733800 C =18562.639943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.539 6.539 7 N -0.730 5.730 8 C 0.127 3.873 9 C -0.103 4.103 10 H 0.086 0.914 11 C -0.121 4.121 12 C 0.037 3.963 13 N -0.484 5.484 14 C 0.034 3.966 15 C 0.445 3.555 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.037 3.963 27 C -0.149 4.149 28 C -0.179 4.179 29 C -0.183 4.183 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.037 0.963 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 1.159 28.654 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.297 3.703 6 O -0.416 6.416 7 N -0.382 5.382 8 C 0.003 3.997 9 C -0.123 4.123 10 H 0.104 0.896 11 C -0.159 4.159 12 C -0.091 4.091 13 N -0.207 5.207 14 C -0.098 4.098 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.092 4.092 27 C -0.167 4.167 28 C -0.216 4.216 29 C -0.220 4.220 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.123 0.877 49 H 0.112 0.888 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.182 1.013 28.365 29.538 hybrid contribution -0.886 -0.018 -0.574 1.056 sum 7.296 0.994 27.790 28.749 Atomic orbital electron populations 1.21923 0.94204 1.01532 1.03137 1.20451 0.96595 0.98777 0.90428 0.90382 1.21747 1.02974 1.00384 0.92478 1.20739 0.79122 0.85764 0.84651 1.90682 1.39596 1.24654 1.86641 1.46073 1.58147 1.28006 1.05926 1.21452 1.00206 0.95068 0.82956 1.22126 1.01059 0.95813 0.93259 0.89579 1.22429 0.99339 0.96795 0.97332 1.23146 0.94323 0.98765 0.92851 1.65230 1.38889 1.09628 1.06989 1.22060 0.96645 0.97653 0.93428 1.19694 0.83953 0.89146 0.84172 1.90498 1.53534 1.22468 1.79741 1.41854 1.47205 1.14562 1.16560 1.19645 1.31439 0.95362 0.96438 0.87997 1.25250 0.96809 0.97087 0.98760 1.69607 1.36255 1.18773 1.29747 0.85921 0.78498 0.80036 0.79774 1.19959 1.20990 1.19900 1.23151 1.00835 0.94473 0.90711 1.22412 0.94669 1.01978 0.97684 1.23005 1.04565 0.97717 0.96279 1.22963 0.93891 1.01823 1.03293 0.92797 0.90535 0.93258 0.88761 0.88881 0.76446 0.91370 0.91379 0.90876 0.91446 0.88263 0.94506 0.93232 0.89263 0.77509 0.91848 0.93626 0.89846 0.87745 0.88758 0.88921 0.88833 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.92 37.16 0.33 -0.89 16 2 C -0.04 -0.31 2.19 -90.62 -0.20 -0.51 16 3 H 0.08 0.68 7.71 -51.93 -0.40 0.28 16 4 C -0.14 -0.85 5.09 -27.88 -0.14 -0.99 16 5 C 0.51 4.73 7.55 -10.99 -0.08 4.64 16 6 O -0.54 -7.05 13.96 5.56 0.08 -6.97 16 7 N -0.73 -5.74 5.37 -60.29 -0.32 -6.07 16 8 C 0.13 1.19 4.74 -4.04 -0.02 1.17 16 9 C -0.10 -1.02 3.10 -89.23 -0.28 -1.29 16 10 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.12 -1.34 6.39 -25.35 -0.16 -1.50 16 12 C 0.04 0.57 5.80 -2.19 -0.01 0.56 16 13 N -0.48 -7.93 5.07 -231.18 -1.17 -9.10 16 14 C 0.03 0.61 5.30 -4.97 -0.03 0.58 16 15 C 0.45 10.55 7.58 -10.99 -0.08 10.47 16 16 O -0.58 -15.59 14.42 5.54 0.08 -15.51 16 17 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 18 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 19 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 22 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.04 0.45 6.05 -2.03 -0.01 0.44 16 27 C -0.15 -0.87 5.15 -90.62 -0.47 -1.34 16 28 C -0.18 -1.01 10.18 -26.73 -0.27 -1.28 16 29 C -0.18 -0.94 9.67 -26.73 -0.26 -1.20 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.80 5.95 -51.93 -0.31 0.49 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.44 7.12 -51.93 -0.37 0.07 16 35 H 0.40 2.23 8.36 -40.82 -0.34 1.89 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.10 1.85 6.91 -51.92 -0.36 1.49 16 41 H 0.04 0.57 7.82 -51.93 -0.41 0.16 16 42 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 43 H 0.09 1.46 8.13 -51.93 -0.42 1.03 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.05 0.53 7.72 -51.93 -0.40 0.13 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 49 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 50 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.09 0.47 7.58 -51.93 -0.39 0.08 16 LS Contribution 414.73 15.07 6.25 6.25 Total: -1.00 -32.87 414.73 -10.48 -43.35 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -9.11 Total: 9.47 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.92 Total: 0.85 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.83 Total: -53.52 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.16 Total: -22.48 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.87 -10.48 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731860620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.349 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds