Wall clock time and date at job start Tue Mar 31 2020 20:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46738 * 2 1 4 4 C 1.53001 * 109.47433 * 239.99709 * 2 1 3 5 5 C 1.50702 * 109.46822 * 65.00199 * 4 2 1 6 6 O 1.21279 * 120.00319 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99814 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47092 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.28726 * 305.69948 * 9 8 7 11 11 C 1.54262 * 110.32554 * 67.82923 * 9 8 7 12 12 C 1.54375 * 105.06151 * 118.99330 * 11 9 8 13 13 N 1.48556 * 104.59344 * 23.85777 * 12 11 9 14 14 C 1.46903 * 111.00051 * 200.95769 * 13 12 11 15 15 C 1.50700 * 109.47029 * 290.12426 * 14 13 12 16 16 O 1.21297 * 119.99891 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00452 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00565 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99472 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00103 * 180.02562 * 18 17 15 21 21 N 1.31420 * 120.00345 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47005 * 60.00043 * 22 20 18 24 24 H 1.48499 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47303 * 300.00012 * 22 20 18 26 26 C 1.48821 * 104.23766 * 320.48498 * 13 12 11 27 27 C 1.53001 * 109.46981 * 119.99345 * 2 1 3 28 28 C 1.52994 * 117.49941 * 248.62252 * 27 2 1 29 29 C 1.53001 * 60.00333 * 252.51187 * 28 27 2 30 30 H 1.08998 * 109.47348 * 300.00144 * 1 2 3 31 31 H 1.09003 * 109.47489 * 60.00757 * 1 2 3 32 32 H 1.09007 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.46864 * 305.00090 * 4 2 1 34 34 H 1.09003 * 109.47210 * 184.99778 * 4 2 1 35 35 H 0.97007 * 120.00142 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.46835 * 59.99808 * 8 7 5 37 37 H 1.09003 * 109.46900 * 299.99787 * 8 7 5 38 38 H 1.08997 * 110.32128 * 237.89756 * 11 9 8 39 39 H 1.09004 * 110.32088 * 359.97438 * 11 9 8 40 40 H 1.09009 * 110.40529 * 142.62988 * 12 11 9 41 41 H 1.08993 * 110.41526 * 264.95475 * 12 11 9 42 42 H 1.09001 * 109.46764 * 50.12109 * 14 13 12 43 43 H 1.08996 * 109.47572 * 170.12319 * 14 13 12 44 44 H 0.97008 * 119.99370 * 359.97438 * 17 15 14 45 45 H 0.96996 * 120.00147 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.45345 * 280.77851 * 26 13 12 47 47 H 1.09001 * 110.49959 * 158.24614 * 26 13 12 48 48 H 1.08999 * 115.54894 * 34.34237 * 27 2 1 49 49 H 1.08995 * 117.50473 * 0.02562 * 28 27 2 50 50 H 1.09005 * 117.49677 * 145.02343 * 28 27 2 51 51 H 1.08997 * 117.50248 * 252.50958 * 29 28 27 52 52 H 1.08999 * 117.51304 * 107.48205 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3634 7 7 1.9846 -0.3920 -3.7001 8 6 1.5966 0.3643 -4.8933 9 6 2.1068 -0.3569 -6.1425 10 1 3.1800 -0.5316 -6.0662 11 6 1.3588 -1.6925 -6.3332 12 6 0.6491 -1.5635 -7.6981 13 7 1.4417 -0.5478 -8.4376 14 6 0.6510 0.0499 -9.5218 15 6 0.4319 -0.9731 -10.6065 16 8 0.8899 -2.0900 -10.4882 17 7 -0.2728 -0.6470 -11.7081 18 6 -0.4726 -1.5778 -12.6947 19 1 -0.0648 -2.5723 -12.5893 20 6 -1.1987 -1.2413 -13.8305 21 7 -1.6945 -0.0310 -13.9589 22 14 -1.4702 -2.5093 -15.1750 23 1 -2.1994 -3.6757 -14.6155 24 1 -2.2701 -1.9054 -16.2708 25 1 -0.1576 -2.9552 -15.7074 26 6 1.7864 0.4689 -7.4069 27 6 2.0399 -0.7211 1.2493 28 6 2.7418 0.1228 2.3151 29 6 3.5550 -0.8279 1.4344 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6054 -1.7198 -1.2950 34 1 3.1264 -0.7995 -1.2055 35 1 2.4885 -1.2159 -3.7907 36 1 2.0312 1.3629 -4.8477 37 1 0.5102 0.4424 -4.9366 38 1 2.0648 -2.5227 -6.3504 39 1 0.6284 -1.8344 -5.5365 40 1 0.6653 -2.5168 -8.2265 41 1 -0.3772 -1.2224 -7.5623 42 1 -0.3125 0.3770 -9.1310 43 1 1.1862 0.9060 -9.9325 44 1 -0.6394 0.2462 -11.8025 45 1 -2.2011 0.2039 -14.7520 46 1 0.9385 1.1294 -7.2249 47 1 2.6587 1.0450 -7.7157 48 1 1.4311 -1.5585 1.5903 49 1 2.8399 1.1919 2.1266 50 1 2.5945 -0.1591 3.3577 51 1 3.9428 -1.7352 1.8975 52 1 4.1884 -0.3847 0.6660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731860620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:06 Heat of formation + Delta-G solvation = -81.638652 kcal Electronic energy + Delta-G solvation = -28492.597162 eV Core-core repulsion = 24491.124926 eV Total energy + Delta-G solvation = -4001.472236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.11020 -40.53593 -39.34770 -38.61356 -36.21646 -35.77101 -34.05236 -33.40737 -32.97956 -30.53132 -29.20448 -28.32580 -26.46656 -25.35153 -24.16248 -23.15428 -22.58439 -21.49600 -21.25423 -20.83272 -20.43859 -19.84366 -18.04932 -17.72327 -17.36752 -16.97938 -16.61932 -16.46594 -16.23887 -16.14499 -15.83521 -15.64031 -15.37245 -14.87887 -14.80141 -14.45061 -14.19710 -14.00564 -13.81650 -13.59425 -13.50772 -13.11545 -13.01013 -12.94916 -12.87122 -12.43624 -12.42811 -12.39712 -12.23576 -12.13368 -12.12003 -12.08465 -11.84141 -11.74048 -11.49574 -11.43111 -11.08633 -10.85795 -10.63129 -10.31930 -10.02703 -10.00924 -9.37963 -8.46277 -5.95272 1.39697 1.41318 1.52414 1.71644 2.05477 2.20577 2.29740 2.84455 2.95620 3.20147 3.36544 3.60773 3.72203 3.76589 3.84732 3.88339 4.04157 4.13012 4.23029 4.25665 4.28287 4.36537 4.39288 4.41807 4.51592 4.54187 4.55417 4.66070 4.69979 4.71112 4.76490 4.82636 4.85620 4.91371 4.93147 5.05341 5.15472 5.18480 5.20126 5.22621 5.28080 5.31636 5.40433 5.41335 5.47216 5.58495 5.84959 5.93546 6.08403 6.60675 6.62107 7.12866 7.33556 7.56264 8.12197 8.70963 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.001514 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.668532 B =18490.733800 C =18562.639943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 H 0.057 0.943 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.582 6.582 7 N -0.719 5.719 8 C 0.135 3.865 9 C -0.087 4.087 10 H 0.103 0.897 11 C -0.109 4.109 12 C 0.033 3.967 13 N -0.506 5.506 14 C 0.046 3.954 15 C 0.442 3.558 16 O -0.615 6.615 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.036 3.964 27 C -0.150 4.150 28 C -0.188 4.188 29 C -0.175 4.175 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.053 0.947 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.104 0.896 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 0.726 29.879 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.060 4.060 3 H 0.076 0.924 4 C -0.168 4.168 5 C 0.295 3.705 6 O -0.462 6.462 7 N -0.372 5.372 8 C 0.011 3.989 9 C -0.106 4.106 10 H 0.122 0.878 11 C -0.147 4.147 12 C -0.095 4.095 13 N -0.230 5.230 14 C -0.086 4.086 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.213 5.213 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.092 4.092 27 C -0.168 4.168 28 C -0.225 4.225 29 C -0.212 4.212 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.252 0.748 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.130 0.870 49 H 0.105 0.895 50 H 0.118 0.882 51 H 0.123 0.877 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.228 0.579 29.601 31.012 hybrid contribution -1.199 0.139 -0.919 1.517 sum 8.028 0.718 28.683 29.794 Atomic orbital electron populations 1.21873 0.95137 1.01779 1.01751 1.20376 0.95795 0.98105 0.91771 0.92407 1.21763 1.04327 1.00446 0.90277 1.21284 0.78259 0.85334 0.85614 1.90676 1.41594 1.26696 1.87243 1.45969 1.57753 1.28278 1.05164 1.21253 0.99249 0.95143 0.83253 1.22005 1.01829 0.94481 0.92325 0.87849 1.22354 0.99548 0.97844 0.94933 1.23083 0.94852 0.96813 0.94731 1.65175 1.38624 1.11183 1.07994 1.21920 0.98235 0.96092 0.92344 1.20734 0.82114 0.89749 0.84515 1.90470 1.54561 1.24523 1.80549 1.41933 1.47997 1.14372 1.16963 1.19631 1.33197 0.95299 0.98248 0.90299 1.26037 0.95869 0.99052 1.00272 1.69672 1.36170 1.19912 1.30458 0.84986 0.78483 0.77698 0.77148 1.19720 1.19489 1.19678 1.23261 1.01592 0.93985 0.90369 1.22335 0.95379 1.02066 0.97026 1.23067 1.05090 0.97548 0.96782 1.23032 0.93244 1.01923 1.02953 0.92916 0.93156 0.92125 0.86788 0.86743 0.74752 0.91575 0.92851 0.90054 0.90005 0.92211 0.94931 0.91609 0.87229 0.77100 0.91325 0.92860 0.88564 0.87044 0.89461 0.88213 0.87730 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.92 71.98 0.64 -1.70 16 2 C -0.04 -0.55 2.19 -10.79 -0.02 -0.57 16 3 H 0.06 1.00 7.71 -2.38 -0.02 0.99 16 4 C -0.13 -1.31 5.09 29.85 0.15 -1.16 16 5 C 0.51 8.63 7.55 87.66 0.66 9.29 16 6 O -0.58 -15.14 13.96 -3.03 -0.04 -15.18 16 7 N -0.72 -9.62 5.37 -463.06 -2.49 -12.11 16 8 C 0.14 2.27 4.74 86.38 0.41 2.68 16 9 C -0.09 -1.50 3.10 -9.89 -0.03 -1.53 16 10 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 11 C -0.11 -2.21 6.39 31.49 0.20 -2.01 16 12 C 0.03 1.03 5.80 86.45 0.50 1.53 16 13 N -0.51 -16.16 5.07 -885.32 -4.49 -20.64 16 14 C 0.05 1.62 5.30 85.56 0.45 2.07 16 15 C 0.44 21.39 7.58 87.66 0.66 22.06 16 16 O -0.62 -34.31 14.42 -3.08 -0.04 -34.36 16 17 N -0.58 -30.00 5.29 -306.98 -1.62 -31.63 16 18 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 21 N -0.92 -50.18 13.05 21.66 0.28 -49.89 16 22 Si 0.99 43.21 29.55 68.60 2.03 45.23 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.04 0.79 6.05 86.40 0.52 1.32 16 27 C -0.15 -1.48 5.15 -10.79 -0.06 -1.53 16 28 C -0.19 -1.87 10.18 30.59 0.31 -1.56 16 29 C -0.17 -1.40 9.67 30.60 0.30 -1.10 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 1.08 5.95 -2.39 -0.01 1.06 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 0.71 7.12 -2.39 -0.02 0.70 16 35 H 0.42 3.24 8.36 -92.70 -0.78 2.46 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 40 H 0.06 2.31 6.91 -2.38 -0.02 2.30 16 41 H 0.03 1.01 7.82 -2.39 -0.02 0.99 16 42 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 43 H 0.11 3.43 8.13 -2.39 -0.02 3.41 16 44 H 0.40 19.63 7.90 -92.70 -0.73 18.90 16 45 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 46 H 0.05 1.12 7.72 -2.39 -0.02 1.10 16 47 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.11 0.97 8.11 -2.39 -0.02 0.95 16 49 H 0.09 0.98 8.05 -2.39 -0.02 0.96 16 50 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.10 0.73 7.58 -2.39 -0.02 0.71 16 Total: -1.00 -73.62 414.73 -0.97 -74.60 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.59 Total: 34.79 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.99 Total: 9.18 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -8.31 Total: -114.27 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.09 Total: -49.54 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.62 -0.97 -74.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731860620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.040 kcal (2) G-P(sol) polarization free energy of solvation -73.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds