Wall clock time and date at job start Tue Mar 31 2020 20:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46905 * 109.47028 * 64.99820 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47187 * 180.02562 * 6 5 4 8 8 O 1.21296 * 120.00033 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00271 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00238 * 180.02562 * 9 7 6 11 11 H 1.08006 * 119.99824 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99916 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00246 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47128 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46964 * 119.99979 * 14 12 10 17 17 H 1.48501 * 109.46861 * 239.99978 * 14 12 10 18 18 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 19 19 N 1.46499 * 109.46679 * 294.99474 * 18 2 1 20 20 C 1.34780 * 119.99539 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00494 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99827 * 180.02562 * 20 19 18 23 23 C 1.55931 * 115.92002 * 62.06158 * 22 20 19 24 24 C 1.58475 * 103.90562 * 160.57073 * 23 22 20 25 25 C 1.55925 * 103.90430 * 0.02562 * 24 23 22 26 26 C 1.55924 * 104.50114 * 70.54742 * 25 24 23 27 27 C 1.54578 * 104.64113 * 288.91283 * 26 25 24 28 28 C 1.56948 * 101.41302 * 326.24713 * 25 24 23 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 33 33 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 34 34 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 35 35 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 36 36 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 37 37 H 0.96999 * 120.00040 * 359.97438 * 9 7 6 38 38 H 0.96998 * 120.00087 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47326 * 54.99931 * 18 2 1 40 40 H 1.09000 * 109.46904 * 175.00284 * 18 2 1 41 41 H 0.96996 * 120.00184 * 0.02562 * 19 18 2 42 42 H 1.09005 * 110.40313 * 278.82148 * 23 22 20 43 43 H 1.08998 * 110.40072 * 41.24193 * 23 22 20 44 44 H 1.08995 * 110.53055 * 241.56270 * 24 23 22 45 45 H 1.09004 * 111.08177 * 118.70754 * 24 23 22 46 46 H 1.09002 * 115.91861 * 199.42993 * 25 24 23 47 47 H 1.08997 * 110.40196 * 170.12283 * 26 25 24 48 48 H 1.08999 * 110.50300 * 47.74875 * 26 25 24 49 49 H 1.09009 * 110.40229 * 241.20957 * 27 26 25 50 50 H 1.09005 * 110.50526 * 118.84363 * 27 26 25 51 51 H 1.09000 * 112.70749 * 296.80721 * 28 25 24 52 52 H 1.08998 * 111.34576 * 170.28349 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6514 0.0373 -2.4456 6 6 2.1258 -0.6266 -3.6671 7 6 1.7098 0.1791 -4.8708 8 8 1.0804 1.2057 -4.7253 9 7 2.0370 -0.2410 -6.1089 10 6 1.6590 0.4922 -7.2039 11 1 1.0986 1.4064 -7.0743 12 6 1.9968 0.0593 -8.4802 13 7 2.6791 -1.0526 -8.6378 14 14 1.4811 1.0581 -9.9722 15 1 0.7287 2.2590 -9.5281 16 1 2.6886 1.4818 -10.7257 17 1 0.6166 0.2279 -10.8489 18 6 2.0400 -0.7213 1.2493 19 7 1.6525 0.0354 2.4423 20 6 1.9956 -0.4136 3.6660 21 8 2.6256 -1.4438 3.7793 22 6 1.5966 0.3645 4.8933 23 6 0.0637 0.5244 5.1304 24 6 -0.0476 0.8913 6.6681 25 6 1.4326 0.9056 7.1580 26 6 2.0514 2.1734 6.4940 27 6 2.1600 1.8155 4.9942 28 6 2.0644 -0.2243 6.2706 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7198 -1.2952 34 1 1.9882 0.9872 -2.3967 35 1 3.2127 -0.7038 -3.6400 36 1 1.6920 -1.6247 -3.7300 37 1 2.5406 -1.0618 -6.2252 38 1 2.9153 -1.3546 -9.5288 39 1 1.6054 -1.7199 1.2952 40 1 3.1263 -0.7995 1.2056 41 1 1.1484 0.8591 2.3517 42 1 -0.3330 1.3347 4.5187 43 1 -0.4544 -0.4087 4.9091 44 1 -0.6177 0.1312 7.2022 45 1 -0.5023 1.8724 6.8052 46 1 1.5793 0.8115 8.2340 47 1 3.0389 2.3760 6.9087 48 1 1.3978 3.0346 6.6327 49 1 3.2009 1.8421 4.6715 50 1 1.5594 2.4991 4.3940 51 1 1.6290 -1.2046 6.4647 52 1 3.1505 -0.2393 6.3611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732350327.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:30 Heat of formation + Delta-G solvation = -88.417891 kcal Electronic energy + Delta-G solvation = -28605.204304 eV Core-core repulsion = 24603.438098 eV Total energy + Delta-G solvation = -4001.766206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08099 -39.06955 -38.33811 -37.12909 -34.89556 -33.86644 -32.41921 -31.20275 -30.76856 -30.19488 -28.10143 -27.41095 -26.68896 -24.86264 -23.30314 -22.72037 -21.98185 -20.75131 -19.96984 -19.41695 -19.03561 -17.88439 -17.47030 -16.44926 -16.03680 -15.86495 -15.68441 -15.46436 -15.21268 -15.00836 -14.66111 -14.30779 -14.16739 -13.67863 -13.49800 -13.21688 -13.17524 -13.01520 -12.66619 -12.61239 -12.40045 -12.21000 -11.95303 -11.75905 -11.67804 -11.52340 -11.46999 -11.43556 -11.31719 -11.16243 -11.09339 -11.00229 -10.88260 -10.81314 -10.43755 -10.34782 -10.22956 -9.98261 -9.52419 -9.30496 -8.46830 -8.06176 -7.96198 -6.42129 -3.83011 2.34016 2.87971 3.16036 3.26595 3.33797 3.83746 3.90623 3.97571 4.05133 4.08881 4.30311 4.51165 4.60312 4.65679 4.70501 4.79132 4.87251 4.89239 4.95278 4.95814 4.99107 5.16618 5.20168 5.25695 5.33577 5.37527 5.46060 5.46777 5.48513 5.54773 5.59267 5.62588 5.67174 5.73293 5.75357 5.77064 5.81382 5.83811 5.86970 5.88970 5.98325 6.08265 6.23079 6.26627 6.38685 7.19249 7.23864 7.54967 7.64258 7.97594 8.06190 8.60852 9.17563 9.54123 10.05384 10.75672 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.001501 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.174547 B =18649.037614 C =18952.488566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.123 3.877 19 N -0.723 5.723 20 C 0.542 3.458 21 O -0.538 6.538 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.107 4.107 26 C -0.119 4.119 27 C -0.108 4.108 28 C -0.094 4.094 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 2.495 30.908 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.001 4.001 19 N -0.375 5.375 20 C 0.328 3.672 21 O -0.414 6.414 22 C -0.109 4.109 23 C -0.145 4.145 24 C -0.155 4.155 25 C -0.126 4.126 26 C -0.157 4.157 27 C -0.146 4.146 28 C -0.131 4.131 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.235 0.765 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.176 2.079 30.832 30.979 hybrid contribution 0.866 0.437 -1.060 1.437 sum -1.310 2.516 29.772 29.907 Atomic orbital electron populations 1.21756 0.93725 1.02173 1.02056 1.21338 0.97623 0.99929 0.92955 0.90549 1.21897 0.97346 0.97980 0.89220 1.60052 1.64129 1.05828 0.99789 1.21668 0.97756 0.98670 0.90117 1.19812 0.85531 0.87920 0.84090 1.90518 1.44123 1.26423 1.85751 1.41874 1.49489 1.24247 1.04458 1.19759 1.32825 1.06698 0.83622 0.87861 1.25264 0.96923 0.96654 0.99120 1.69618 1.38911 1.21778 1.23974 0.85799 0.78264 0.79573 0.80693 1.19224 1.20785 1.20736 1.21415 1.00025 0.95476 0.83161 1.45995 1.57834 1.27896 1.05729 1.19776 0.78831 0.84953 0.83655 1.90709 1.39715 1.24331 1.86685 1.22956 0.97868 0.96381 0.93715 1.23226 0.92710 1.01767 0.96782 1.23257 0.96150 1.01519 0.94612 1.23577 0.95186 0.95084 0.98714 1.22612 1.01059 0.97482 0.94504 1.22598 1.01241 0.93445 0.97308 1.23317 1.00699 0.97889 0.91238 0.90405 0.93752 0.92783 0.95279 0.90727 0.83266 0.93879 0.89579 0.77454 0.91920 0.91189 0.91486 0.76452 0.91039 0.91249 0.91522 0.91233 0.88092 0.91560 0.91321 0.91425 0.91057 0.90593 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.95 37.16 0.33 -1.06 16 2 C -0.10 -0.95 2.57 -90.62 -0.23 -1.18 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.07 0.76 5.07 -3.82 -0.02 0.75 16 5 N -0.67 -10.26 5.58 -115.06 -0.64 -10.90 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.35 7.82 -10.99 -0.09 10.27 16 8 O -0.58 -15.73 15.78 5.54 0.09 -15.64 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 1.17 5.06 -4.04 -0.02 1.15 16 19 N -0.72 -6.18 5.28 -60.29 -0.32 -6.50 16 20 C 0.54 5.60 7.20 -10.98 -0.08 5.52 16 21 O -0.54 -7.74 16.51 5.56 0.09 -7.65 16 22 C -0.11 -0.80 1.26 -150.38 -0.19 -0.99 16 23 C -0.11 -0.64 6.07 -22.14 -0.13 -0.78 16 24 C -0.12 -0.60 6.41 -22.14 -0.14 -0.74 16 25 C -0.11 -0.57 5.14 -85.36 -0.44 -1.01 16 26 C -0.12 -0.61 6.20 -24.34 -0.15 -0.76 16 27 C -0.11 -0.65 5.86 -24.31 -0.14 -0.80 16 28 C -0.09 -0.71 5.68 -22.47 -0.13 -0.83 16 29 H 0.08 0.96 7.75 -51.93 -0.40 0.55 16 30 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 2.62 7.65 -40.82 -0.31 2.30 16 42 H 0.07 0.36 7.80 -51.93 -0.41 -0.05 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.30 7.83 -51.93 -0.41 -0.10 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.30 7.82 -51.93 -0.41 -0.10 16 49 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 50 H 0.07 0.36 7.81 -51.93 -0.41 -0.05 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 414.78 15.07 6.25 6.25 Total: -1.00 -32.77 414.78 -9.81 -42.58 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -9.22 Total: 11.66 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.70 Total: 2.37 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.29 Total: -55.58 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.18 Total: -23.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.77 -9.81 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732350327.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.837 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds