Wall clock time and date at job start Tue Mar 31 2020 20:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46905 * 109.47028 * 64.99820 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47187 * 180.02562 * 6 5 4 8 8 O 1.21296 * 120.00033 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00271 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00238 * 180.02562 * 9 7 6 11 11 H 1.08006 * 119.99824 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99916 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00246 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47128 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46964 * 119.99979 * 14 12 10 17 17 H 1.48501 * 109.46861 * 239.99978 * 14 12 10 18 18 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 19 19 N 1.46499 * 109.46679 * 294.99474 * 18 2 1 20 20 C 1.34780 * 119.99539 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00494 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99827 * 180.02562 * 20 19 18 23 23 C 1.55931 * 115.92002 * 62.06158 * 22 20 19 24 24 C 1.58475 * 103.90562 * 160.57073 * 23 22 20 25 25 C 1.55925 * 103.90430 * 0.02562 * 24 23 22 26 26 C 1.55924 * 104.50114 * 70.54742 * 25 24 23 27 27 C 1.54578 * 104.64113 * 288.91283 * 26 25 24 28 28 C 1.56948 * 101.41302 * 326.24713 * 25 24 23 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 33 33 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 34 34 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 35 35 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 36 36 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 37 37 H 0.96999 * 120.00040 * 359.97438 * 9 7 6 38 38 H 0.96998 * 120.00087 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47326 * 54.99931 * 18 2 1 40 40 H 1.09000 * 109.46904 * 175.00284 * 18 2 1 41 41 H 0.96996 * 120.00184 * 0.02562 * 19 18 2 42 42 H 1.09005 * 110.40313 * 278.82148 * 23 22 20 43 43 H 1.08998 * 110.40072 * 41.24193 * 23 22 20 44 44 H 1.08995 * 110.53055 * 241.56270 * 24 23 22 45 45 H 1.09004 * 111.08177 * 118.70754 * 24 23 22 46 46 H 1.09002 * 115.91861 * 199.42993 * 25 24 23 47 47 H 1.08997 * 110.40196 * 170.12283 * 26 25 24 48 48 H 1.08999 * 110.50300 * 47.74875 * 26 25 24 49 49 H 1.09009 * 110.40229 * 241.20957 * 27 26 25 50 50 H 1.09005 * 110.50526 * 118.84363 * 27 26 25 51 51 H 1.09000 * 112.70749 * 296.80721 * 28 25 24 52 52 H 1.08998 * 111.34576 * 170.28349 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6514 0.0373 -2.4456 6 6 2.1258 -0.6266 -3.6671 7 6 1.7098 0.1791 -4.8708 8 8 1.0804 1.2057 -4.7253 9 7 2.0370 -0.2410 -6.1089 10 6 1.6590 0.4922 -7.2039 11 1 1.0986 1.4064 -7.0743 12 6 1.9968 0.0593 -8.4802 13 7 2.6791 -1.0526 -8.6378 14 14 1.4811 1.0581 -9.9722 15 1 0.7287 2.2590 -9.5281 16 1 2.6886 1.4818 -10.7257 17 1 0.6166 0.2279 -10.8489 18 6 2.0400 -0.7213 1.2493 19 7 1.6525 0.0354 2.4423 20 6 1.9956 -0.4136 3.6660 21 8 2.6256 -1.4438 3.7793 22 6 1.5966 0.3645 4.8933 23 6 0.0637 0.5244 5.1304 24 6 -0.0476 0.8913 6.6681 25 6 1.4326 0.9056 7.1580 26 6 2.0514 2.1734 6.4940 27 6 2.1600 1.8155 4.9942 28 6 2.0644 -0.2243 6.2706 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7198 -1.2952 34 1 1.9882 0.9872 -2.3967 35 1 3.2127 -0.7038 -3.6400 36 1 1.6920 -1.6247 -3.7300 37 1 2.5406 -1.0618 -6.2252 38 1 2.9153 -1.3546 -9.5288 39 1 1.6054 -1.7199 1.2952 40 1 3.1263 -0.7995 1.2056 41 1 1.1484 0.8591 2.3517 42 1 -0.3330 1.3347 4.5187 43 1 -0.4544 -0.4087 4.9091 44 1 -0.6177 0.1312 7.2022 45 1 -0.5023 1.8724 6.8052 46 1 1.5793 0.8115 8.2340 47 1 3.0389 2.3760 6.9087 48 1 1.3978 3.0346 6.6327 49 1 3.2009 1.8421 4.6715 50 1 1.5594 2.4991 4.3940 51 1 1.6290 -1.2046 6.4647 52 1 3.1505 -0.2393 6.3611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732350327.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:29 Heat of formation + Delta-G solvation = -111.199128 kcal Electronic energy + Delta-G solvation = -28606.192172 eV Core-core repulsion = 24603.438098 eV Total energy + Delta-G solvation = -4002.754074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69896 -40.19634 -39.73380 -38.19674 -36.19400 -35.65452 -33.50220 -33.16540 -31.19144 -30.77677 -28.81230 -28.61989 -27.55285 -26.51256 -24.57624 -23.14245 -22.77749 -21.65636 -21.04271 -20.46436 -19.98140 -19.78437 -18.08815 -17.82509 -17.07540 -16.99722 -16.64511 -16.47726 -16.14045 -15.98361 -15.88736 -15.64330 -15.26996 -15.18513 -14.81350 -14.35915 -13.94539 -13.81965 -13.55838 -13.48318 -13.41224 -13.24831 -13.16379 -13.02697 -12.84871 -12.65023 -12.40680 -12.19181 -12.11611 -12.03512 -12.01957 -11.99029 -11.84854 -11.81340 -11.72392 -11.51232 -11.28880 -10.88640 -10.80693 -10.34345 -10.12359 -10.01607 -9.30677 -8.46894 -5.95763 1.36846 1.42144 1.54749 1.56399 2.05222 2.12358 2.29813 2.94767 3.20549 3.30305 3.48947 3.52657 3.55008 3.85136 3.87650 4.02695 4.07426 4.16445 4.22156 4.32538 4.38010 4.44738 4.47554 4.49192 4.55697 4.57211 4.57775 4.62045 4.66161 4.76507 4.82136 4.82919 4.95848 5.01082 5.06894 5.07930 5.12787 5.16476 5.23788 5.26223 5.33536 5.38308 5.41072 5.41327 5.43910 5.52857 5.88191 6.09638 6.41211 6.52231 6.59831 7.12488 7.20909 7.56244 8.11209 8.70722 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.001501 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.174547 B =18649.037614 C =18952.488566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.064 3.936 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.130 3.870 19 N -0.711 5.711 20 C 0.538 3.462 21 O -0.585 6.585 22 C -0.110 4.110 23 C -0.105 4.105 24 C -0.114 4.114 25 C -0.100 4.100 26 C -0.116 4.116 27 C -0.105 4.105 28 C -0.102 4.102 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.413 0.587 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.062 0.938 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 3.443 31.830 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.006 3.994 19 N -0.363 5.363 20 C 0.326 3.674 21 O -0.465 6.465 22 C -0.113 4.113 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.118 4.118 26 C -0.154 4.154 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.250 0.750 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.085 0.915 48 H 0.102 0.898 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.080 0.920 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.626 3.028 31.763 32.015 hybrid contribution 1.015 0.108 -1.300 1.653 sum -1.611 3.136 30.462 30.666 Atomic orbital electron populations 1.21701 0.93793 1.01901 1.01899 1.21193 0.97335 1.00031 0.91953 0.89774 1.21967 0.98152 0.97833 0.88349 1.60046 1.64616 1.05936 1.00228 1.21526 0.99065 0.98063 0.88154 1.20873 0.83866 0.87619 0.85061 1.90486 1.45533 1.28320 1.86505 1.41949 1.50042 1.24359 1.04789 1.19722 1.34382 1.06958 0.85314 0.90241 1.26048 0.96435 0.97580 1.01237 1.69677 1.38984 1.22524 1.24991 0.84859 0.78216 0.77975 0.77201 1.19730 1.19613 1.19659 1.21260 0.99562 0.95222 0.83381 1.45899 1.57261 1.28037 1.05067 1.20305 0.77928 0.84479 0.84713 1.90683 1.41981 1.26507 1.87374 1.22939 0.99258 0.96910 0.92162 1.23251 0.91119 1.01900 0.97999 1.23268 0.95902 1.02403 0.93608 1.23599 0.95187 0.93972 0.99039 1.22622 1.01509 0.97729 0.93526 1.22620 1.00769 0.92467 0.98452 1.23348 0.99996 0.98270 0.92376 0.92719 0.91700 0.93128 0.94168 0.90402 0.83675 0.91683 0.87959 0.77010 0.91320 0.91984 0.92100 0.74994 0.89440 0.92295 0.91394 0.89683 0.86887 0.91489 0.89785 0.92516 0.89460 0.91954 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.95 71.98 0.64 -1.87 16 2 C -0.09 -1.52 2.57 -10.79 -0.03 -1.55 16 3 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.07 1.44 5.07 86.30 0.44 1.88 16 5 N -0.68 -20.13 5.58 -517.94 -2.89 -23.02 16 6 C 0.06 2.17 6.17 85.56 0.53 2.69 16 7 C 0.44 20.71 7.82 87.66 0.69 21.40 16 8 O -0.62 -34.13 15.78 -3.08 -0.05 -34.17 16 9 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 10 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 13 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 14 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.13 2.35 5.06 86.38 0.44 2.78 16 19 N -0.71 -11.35 5.28 -463.05 -2.45 -13.80 16 20 C 0.54 11.01 7.20 87.66 0.63 11.64 16 21 O -0.59 -17.33 16.51 -3.03 -0.05 -17.38 16 22 C -0.11 -1.56 1.26 -49.51 -0.06 -1.62 16 23 C -0.10 -1.08 6.07 33.57 0.20 -0.87 16 24 C -0.11 -0.90 6.41 33.57 0.22 -0.68 16 25 C -0.10 -0.89 5.14 -7.38 -0.04 -0.93 16 26 C -0.12 -0.93 6.20 32.14 0.20 -0.73 16 27 C -0.11 -1.09 5.86 32.16 0.19 -0.90 16 28 C -0.10 -1.53 5.68 33.35 0.19 -1.34 16 29 H 0.05 1.30 7.75 -2.39 -0.02 1.28 16 30 H 0.06 0.92 7.18 -2.39 -0.02 0.90 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.34 10.69 8.43 -89.69 -0.76 9.94 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 38 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 4.54 7.65 -92.71 -0.71 3.83 16 42 H 0.09 0.62 7.80 -2.38 -0.02 0.60 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.45 7.83 -2.38 -0.02 0.43 16 46 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.46 7.82 -2.39 -0.02 0.44 16 49 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.09 0.62 7.81 -2.38 -0.02 0.61 16 51 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 52 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -72.11 414.78 -0.51 -72.62 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -1.27 Total: 39.98 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 5.51 Total: 11.44 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.68 Total: -117.42 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.10 Total: -51.55 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.11 -0.51 -72.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732350327.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.583 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds