Wall clock time and date at job start Tue Mar 31 2020 20:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47005 * 2 1 4 4 C 1.52997 * 109.47302 * 119.99585 * 2 1 3 5 5 N 1.46900 * 109.47158 * 174.99992 * 4 2 1 6 6 C 1.46896 * 111.00120 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47485 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99459 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99916 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00102 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99766 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00066 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46961 * 60.00032 * 14 12 10 16 16 H 1.48497 * 109.47218 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47032 * 300.00314 * 14 12 10 18 18 N 1.46499 * 109.46965 * 240.00352 * 2 1 3 19 19 C 1.46499 * 119.99855 * 295.49036 * 18 2 1 20 20 C 1.34772 * 120.00051 * 115.49917 * 18 2 1 21 21 O 1.21284 * 119.99906 * 185.07454 * 20 18 2 22 22 C 1.50702 * 120.00065 * 5.06641 * 20 18 2 23 23 C 1.55924 * 115.92176 * 295.73180 * 22 20 18 24 24 C 1.58476 * 103.90308 * 199.42975 * 23 22 20 25 25 C 1.55920 * 103.90672 * 0.02562 * 24 23 22 26 26 C 1.55921 * 104.50193 * 289.45161 * 25 24 23 27 27 C 1.54582 * 104.64178 * 71.08681 * 26 25 24 28 28 C 1.56951 * 116.22064 * 176.74422 * 22 20 18 29 29 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46705 * 299.99765 * 1 2 3 31 31 H 1.09000 * 109.47282 * 59.99923 * 1 2 3 32 32 H 1.09004 * 109.46501 * 55.00521 * 4 2 1 33 33 H 1.08998 * 109.47347 * 295.00463 * 4 2 1 34 34 H 1.00902 * 110.99852 * 303.95458 * 5 4 2 35 35 H 1.09007 * 109.46859 * 300.00306 * 6 5 4 36 36 H 1.09004 * 109.47274 * 59.99695 * 6 5 4 37 37 H 0.97002 * 119.99912 * 0.02562 * 9 7 6 38 38 H 0.96994 * 119.99819 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46816 * 95.25149 * 19 18 2 40 40 H 1.08994 * 109.47657 * 215.25475 * 19 18 2 41 41 H 1.09002 * 109.47268 * 335.25546 * 19 18 2 42 42 H 1.09002 * 110.40409 * 318.76135 * 23 22 20 43 43 H 1.09001 * 110.40233 * 81.18138 * 23 22 20 44 44 H 1.09003 * 110.98455 * 241.33720 * 24 23 22 45 45 H 1.08997 * 110.62323 * 118.48868 * 24 23 22 46 46 H 1.09005 * 115.91980 * 160.56873 * 25 24 23 47 47 H 1.09004 * 110.40397 * 312.29952 * 26 25 24 48 48 H 1.08990 * 110.50414 * 189.92969 * 26 25 24 49 49 H 1.09004 * 110.40632 * 241.20948 * 27 26 25 50 50 H 1.08998 * 110.50254 * 118.84305 * 27 26 25 51 51 H 1.08998 * 112.03137 * 297.12256 * 28 22 20 52 52 H 1.09000 * 112.03137 * 63.64787 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5041 -0.8265 1.1904 6 6 4.0304 -1.5157 2.3761 7 6 5.5318 -1.6041 2.2808 8 8 6.1068 -1.1384 1.3196 9 7 6.2356 -2.1998 3.2637 10 6 7.6014 -2.2806 3.1766 11 1 8.1133 -1.8667 2.3205 12 6 8.3270 -2.8952 4.1898 13 7 7.7040 -3.3994 5.2313 14 14 10.1880 -3.0049 4.0715 15 1 10.7608 -1.6367 3.9992 16 1 10.7201 -3.7009 5.2705 17 1 10.5626 -3.7634 2.8511 18 7 2.0183 -0.6905 -1.1962 19 6 1.7477 -2.1186 -1.3794 20 6 2.7167 -0.0121 -2.1281 21 8 3.0415 -0.5597 -3.1604 22 6 3.0938 1.4270 -1.8875 23 6 1.9076 2.4327 -1.7745 24 6 2.5771 3.8433 -2.0457 25 6 4.0798 3.5045 -2.2876 26 6 4.6142 3.0774 -0.8865 27 6 3.9611 1.7015 -0.6220 28 6 3.9737 2.1077 -2.9947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6055 -1.7197 1.2951 33 1 1.7517 -0.1582 2.1370 34 1 3.7996 -1.2883 0.3433 35 1 3.7558 -0.9585 3.2719 36 1 3.6095 -2.5198 2.4295 37 1 5.7757 -2.5719 4.0325 38 1 8.2105 -3.8280 5.9388 39 1 0.8558 -2.2435 -1.9935 40 1 2.5977 -2.5892 -1.8732 41 1 1.5879 -2.5857 -0.4075 42 1 1.1460 2.2075 -2.5211 43 1 1.4791 2.4040 -0.7727 44 1 2.4693 4.4991 -1.1818 45 1 2.1456 4.3091 -2.9316 46 1 4.6619 4.2651 -2.8081 47 1 4.3065 3.7963 -0.1271 48 1 5.7001 2.9856 -0.9038 49 1 3.3323 1.7440 0.2675 50 1 4.7246 0.9317 -0.5102 51 1 4.9462 1.6264 -3.0972 52 1 3.4519 2.1719 -3.9495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732425563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:43 Heat of formation + Delta-G solvation = -59.576117 kcal Electronic energy + Delta-G solvation = -31428.428340 eV Core-core repulsion = 27427.912808 eV Total energy + Delta-G solvation = -4000.515532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08510 -38.84185 -38.23371 -37.07630 -34.50268 -33.71418 -31.45732 -31.17397 -30.31750 -30.25587 -27.70782 -27.62587 -26.80028 -25.04342 -23.34157 -22.34225 -22.22521 -20.63211 -19.45601 -19.25096 -18.75451 -17.88994 -16.80255 -16.53816 -15.87655 -15.66198 -15.41921 -15.04481 -14.97690 -14.69571 -14.46105 -14.30138 -13.88186 -13.52842 -13.22869 -13.09596 -12.91128 -12.66027 -12.57990 -12.50125 -12.14584 -12.03352 -11.92124 -11.70806 -11.60410 -11.59096 -11.43455 -11.31338 -11.22595 -11.01661 -11.00451 -10.92088 -10.70540 -10.44175 -10.21297 -10.18783 -9.89976 -9.61636 -9.49530 -8.78420 -8.42359 -8.07186 -7.95698 -6.41700 -3.82348 2.65711 2.93714 3.20400 3.25941 3.30587 3.91024 4.04364 4.22284 4.27542 4.36428 4.48233 4.69072 4.75736 4.88763 4.97641 5.05209 5.13692 5.18081 5.22519 5.25154 5.27082 5.32920 5.37853 5.42062 5.43915 5.50445 5.52068 5.57385 5.59598 5.73756 5.77722 5.78764 5.80066 5.80862 5.92081 5.95735 5.98560 6.03453 6.14015 6.20245 6.24434 6.25291 6.38418 6.52875 6.62388 7.16150 7.36478 7.55225 7.61056 8.06274 8.23685 8.61405 9.18133 9.54429 10.05978 10.76026 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.003106 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.255079 B = 9012.559892 C = 9987.411770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 H 0.119 0.881 4 C 0.045 3.955 5 N -0.663 5.663 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.606 5.606 19 C 0.083 3.917 20 C 0.551 3.449 21 O -0.539 6.539 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.120 4.120 27 C -0.101 4.101 28 C -0.093 4.093 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.350 0.650 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.155 10.443 -8.830 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.137 0.863 4 C -0.086 4.086 5 N -0.296 5.296 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.339 5.339 19 C -0.060 4.060 20 C 0.340 3.660 21 O -0.416 6.416 22 C -0.107 4.107 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.126 4.126 26 C -0.157 4.157 27 C -0.139 4.139 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.171 0.829 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.116 0.884 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.105 0.895 51 H 0.094 0.906 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.402 10.963 -9.582 21.933 hybrid contribution 0.261 -1.468 0.582 1.601 sum -16.142 9.495 -9.000 20.778 Atomic orbital electron populations 1.22159 0.94802 1.02658 1.02519 1.21779 0.93849 0.99120 0.83906 0.86337 1.22366 0.89360 0.99130 0.97708 1.60105 1.07182 1.57239 1.05095 1.21678 0.95165 0.96894 0.94503 1.19794 0.88050 0.84311 0.85268 1.90531 1.71091 1.51419 1.33413 1.41848 1.07376 1.50920 1.19895 1.19649 0.81542 1.35118 1.06534 0.87997 1.25249 1.00644 0.96771 0.95221 1.69602 1.36774 1.38629 1.09421 0.85930 0.82195 0.78622 0.77560 1.19873 1.20987 1.19917 1.47804 1.54910 1.09825 1.21398 1.21603 1.01769 0.80956 1.01663 1.19863 0.76359 0.87388 0.82424 1.90678 1.54280 1.70184 1.26424 1.22871 0.97697 0.90614 0.99539 1.23389 0.95874 0.93939 1.01499 1.23239 0.95158 0.95792 1.01159 1.23557 0.95809 0.96718 0.96467 1.22638 1.00548 0.96742 0.95788 1.22709 0.99170 0.97653 0.94362 1.23296 0.99396 0.94144 0.96268 0.92219 0.91158 0.92048 0.95108 0.89822 0.82938 0.89592 0.94107 0.77527 0.91847 0.92909 0.90807 0.91221 0.91791 0.90887 0.91340 0.91911 0.88438 0.91788 0.91521 0.90450 0.89487 0.90581 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.26 37.16 0.34 -0.85 16 2 C 0.12 1.14 2.01 -67.93 -0.14 1.00 16 3 H 0.12 1.17 1.97 -51.93 -0.10 1.07 16 4 C 0.04 0.48 4.89 -3.83 -0.02 0.46 16 5 N -0.66 -9.94 5.45 -115.06 -0.63 -10.56 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 8 O -0.58 -15.49 15.78 5.54 0.09 -15.40 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 13 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 14 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 18 N -0.61 -7.25 1.89 -173.94 -0.33 -7.58 16 19 C 0.08 0.93 9.28 59.85 0.56 1.48 16 20 C 0.55 7.99 7.10 -10.99 -0.08 7.91 16 21 O -0.54 -9.74 16.23 5.55 0.09 -9.65 16 22 C -0.10 -1.28 0.87 -150.43 -0.13 -1.41 16 23 C -0.11 -1.03 5.39 -22.14 -0.12 -1.15 16 24 C -0.12 -0.99 6.41 -22.15 -0.14 -1.13 16 25 C -0.11 -1.07 5.14 -85.38 -0.44 -1.51 16 26 C -0.12 -1.37 6.20 -24.34 -0.15 -1.53 16 27 C -0.10 -1.32 4.64 -24.37 -0.11 -1.44 16 28 C -0.09 -1.14 5.68 -22.47 -0.13 -1.27 16 29 H 0.06 0.43 7.78 -51.93 -0.40 0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.31 6.73 -51.93 -0.35 -0.04 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.35 5.96 7.35 -39.29 -0.29 5.67 16 35 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 41 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.61 5.97 -51.93 -0.31 0.30 16 44 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.96 5.90 -51.93 -0.31 0.66 16 50 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 51 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -32.20 399.04 -8.66 -40.85 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -8.62 Total: 14.63 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.91 Total: 3.56 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.29 Total: -56.14 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.18 Total: -25.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.20 -8.66 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732425563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.721 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds