Wall clock time and date at job start Tue Mar 31 2020 20:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47005 * 2 1 4 4 C 1.52997 * 109.47302 * 119.99585 * 2 1 3 5 5 N 1.46900 * 109.47158 * 174.99992 * 4 2 1 6 6 C 1.46896 * 111.00120 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47485 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99459 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99916 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00102 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99766 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00066 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46961 * 60.00032 * 14 12 10 16 16 H 1.48497 * 109.47218 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47032 * 300.00314 * 14 12 10 18 18 N 1.46499 * 109.46965 * 240.00352 * 2 1 3 19 19 C 1.46499 * 119.99855 * 295.49036 * 18 2 1 20 20 C 1.34772 * 120.00051 * 115.49917 * 18 2 1 21 21 O 1.21284 * 119.99906 * 185.07454 * 20 18 2 22 22 C 1.50702 * 120.00065 * 5.06641 * 20 18 2 23 23 C 1.55924 * 115.92176 * 295.73180 * 22 20 18 24 24 C 1.58476 * 103.90308 * 199.42975 * 23 22 20 25 25 C 1.55920 * 103.90672 * 0.02562 * 24 23 22 26 26 C 1.55921 * 104.50193 * 289.45161 * 25 24 23 27 27 C 1.54582 * 104.64178 * 71.08681 * 26 25 24 28 28 C 1.56951 * 116.22064 * 176.74422 * 22 20 18 29 29 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46705 * 299.99765 * 1 2 3 31 31 H 1.09000 * 109.47282 * 59.99923 * 1 2 3 32 32 H 1.09004 * 109.46501 * 55.00521 * 4 2 1 33 33 H 1.08998 * 109.47347 * 295.00463 * 4 2 1 34 34 H 1.00902 * 110.99852 * 303.95458 * 5 4 2 35 35 H 1.09007 * 109.46859 * 300.00306 * 6 5 4 36 36 H 1.09004 * 109.47274 * 59.99695 * 6 5 4 37 37 H 0.97002 * 119.99912 * 0.02562 * 9 7 6 38 38 H 0.96994 * 119.99819 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46816 * 95.25149 * 19 18 2 40 40 H 1.08994 * 109.47657 * 215.25475 * 19 18 2 41 41 H 1.09002 * 109.47268 * 335.25546 * 19 18 2 42 42 H 1.09002 * 110.40409 * 318.76135 * 23 22 20 43 43 H 1.09001 * 110.40233 * 81.18138 * 23 22 20 44 44 H 1.09003 * 110.98455 * 241.33720 * 24 23 22 45 45 H 1.08997 * 110.62323 * 118.48868 * 24 23 22 46 46 H 1.09005 * 115.91980 * 160.56873 * 25 24 23 47 47 H 1.09004 * 110.40397 * 312.29952 * 26 25 24 48 48 H 1.08990 * 110.50414 * 189.92969 * 26 25 24 49 49 H 1.09004 * 110.40632 * 241.20948 * 27 26 25 50 50 H 1.08998 * 110.50254 * 118.84305 * 27 26 25 51 51 H 1.08998 * 112.03137 * 297.12256 * 28 22 20 52 52 H 1.09000 * 112.03137 * 63.64787 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5041 -0.8265 1.1904 6 6 4.0304 -1.5157 2.3761 7 6 5.5318 -1.6041 2.2808 8 8 6.1068 -1.1384 1.3196 9 7 6.2356 -2.1998 3.2637 10 6 7.6014 -2.2806 3.1766 11 1 8.1133 -1.8667 2.3205 12 6 8.3270 -2.8952 4.1898 13 7 7.7040 -3.3994 5.2313 14 14 10.1880 -3.0049 4.0715 15 1 10.7608 -1.6367 3.9992 16 1 10.7201 -3.7009 5.2705 17 1 10.5626 -3.7634 2.8511 18 7 2.0183 -0.6905 -1.1962 19 6 1.7477 -2.1186 -1.3794 20 6 2.7167 -0.0121 -2.1281 21 8 3.0415 -0.5597 -3.1604 22 6 3.0938 1.4270 -1.8875 23 6 1.9076 2.4327 -1.7745 24 6 2.5771 3.8433 -2.0457 25 6 4.0798 3.5045 -2.2876 26 6 4.6142 3.0774 -0.8865 27 6 3.9611 1.7015 -0.6220 28 6 3.9737 2.1077 -2.9947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6055 -1.7197 1.2951 33 1 1.7517 -0.1582 2.1370 34 1 3.7996 -1.2883 0.3433 35 1 3.7558 -0.9585 3.2719 36 1 3.6095 -2.5198 2.4295 37 1 5.7757 -2.5719 4.0325 38 1 8.2105 -3.8280 5.9388 39 1 0.8558 -2.2435 -1.9935 40 1 2.5977 -2.5892 -1.8732 41 1 1.5879 -2.5857 -0.4075 42 1 1.1460 2.2075 -2.5211 43 1 1.4791 2.4040 -0.7727 44 1 2.4693 4.4991 -1.1818 45 1 2.1456 4.3091 -2.9316 46 1 4.6619 4.2651 -2.8081 47 1 4.3065 3.7963 -0.1271 48 1 5.7001 2.9856 -0.9038 49 1 3.3323 1.7440 0.2675 50 1 4.7246 0.9317 -0.5102 51 1 4.9462 1.6264 -3.0972 52 1 3.4519 2.1719 -3.9495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732425563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:42 Heat of formation + Delta-G solvation = -81.067703 kcal Electronic energy + Delta-G solvation = -31429.360285 eV Core-core repulsion = 27427.912808 eV Total energy + Delta-G solvation = -4001.447477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05698 -40.17012 -39.68599 -38.23297 -36.11729 -35.35676 -33.26229 -32.29722 -31.24527 -31.11786 -28.95474 -28.63471 -27.72270 -26.68498 -24.64445 -23.33870 -23.07628 -21.56775 -21.04673 -20.31040 -19.92563 -19.69775 -17.97546 -17.74129 -17.14827 -16.98303 -16.51327 -16.45290 -16.06167 -15.89076 -15.79399 -15.66245 -15.28601 -14.97377 -14.37956 -14.07173 -13.97936 -13.85765 -13.55396 -13.50683 -13.42439 -13.15737 -13.03847 -12.97129 -12.89464 -12.69540 -12.55063 -12.45898 -12.39932 -12.13912 -12.12206 -12.06112 -11.95672 -11.83474 -11.59013 -11.50674 -11.05435 -10.82950 -10.72677 -10.34454 -10.01285 -9.72654 -9.26461 -8.47466 -5.95659 1.37988 1.39801 1.50428 1.55458 1.99880 2.06665 2.28068 2.92311 3.20133 3.30832 3.48042 3.51094 3.59646 3.78809 3.90362 4.11001 4.17642 4.25132 4.30104 4.33686 4.35362 4.44287 4.49234 4.50460 4.57374 4.59416 4.60514 4.61497 4.66804 4.73473 4.74952 4.84870 4.85385 4.91196 5.00368 5.06451 5.10572 5.19913 5.26305 5.31012 5.35165 5.39792 5.42319 5.42835 5.49501 5.61357 5.88927 6.10969 6.31821 6.37187 6.60511 7.12837 7.15626 7.56959 8.13232 8.69751 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.003106 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.255079 B = 9012.559892 C = 9987.411770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.116 3.884 3 H 0.119 0.881 4 C 0.044 3.956 5 N -0.673 5.673 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.622 6.622 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.920 5.920 14 Si 0.989 3.011 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.275 1.275 18 N -0.601 5.601 19 C 0.082 3.918 20 C 0.540 3.460 21 O -0.589 6.589 22 C -0.106 4.106 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.096 4.096 26 C -0.121 4.121 27 C -0.092 4.092 28 C -0.103 4.103 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.335 0.665 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.087 0.913 50 H 0.036 0.964 51 H 0.044 0.956 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.672 11.902 -7.441 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 H 0.136 0.864 4 C -0.085 4.085 5 N -0.305 5.305 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.211 4.211 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.200 1.200 18 N -0.332 5.332 19 C -0.061 4.061 20 C 0.329 3.671 21 O -0.470 6.470 22 C -0.109 4.109 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.159 4.159 27 C -0.129 4.129 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.132 0.868 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.055 0.945 51 H 0.063 0.937 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.974 12.422 -8.135 24.094 hybrid contribution 1.033 -1.965 0.138 2.224 sum -17.942 10.457 -7.997 22.253 Atomic orbital electron populations 1.22120 0.92041 1.03411 1.03812 1.21972 0.95785 0.98595 0.82299 0.86388 1.22547 0.86400 1.00462 0.99114 1.60115 1.10115 1.56734 1.03579 1.21546 0.90070 0.98833 0.96229 1.20975 0.90813 0.82131 0.83721 1.90514 1.72855 1.52606 1.34841 1.41907 1.06739 1.51745 1.20694 1.19586 0.83223 1.36892 1.06610 0.90670 1.25977 1.04674 0.95851 0.94560 1.69655 1.38250 1.38495 1.09656 0.85048 0.77130 0.78615 0.77913 1.19733 1.19294 1.19993 1.47917 1.53838 1.10057 1.21425 1.21645 1.01118 0.80631 1.02693 1.20365 0.76096 0.88385 0.82235 1.90641 1.56375 1.71320 1.28623 1.22856 0.99147 0.90134 0.98740 1.23404 0.94569 0.93274 1.02735 1.23245 0.93208 0.95377 1.02722 1.23571 0.97515 0.95482 0.94796 1.22664 0.99295 0.96294 0.97614 1.22551 0.98102 0.97038 0.95245 1.23330 0.97953 0.95894 0.96891 0.91793 0.88806 0.91802 0.93728 0.87503 0.84672 0.87103 0.92030 0.76982 0.91295 0.91476 0.93628 0.89312 0.91368 0.89099 0.89455 0.90382 0.86831 0.89760 0.93593 0.89457 0.94530 0.93715 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.26 71.98 0.67 -1.00 16 2 C 0.12 1.98 2.01 44.99 0.09 2.07 16 3 H 0.12 2.03 1.97 -2.39 0.00 2.03 16 4 C 0.04 0.82 4.89 86.30 0.42 1.24 16 5 N -0.67 -19.67 5.45 -517.93 -2.82 -22.49 16 6 C 0.07 2.13 6.17 85.56 0.53 2.65 16 7 C 0.44 20.63 7.82 87.66 0.69 21.31 16 8 O -0.62 -34.80 15.78 -3.08 -0.05 -34.85 16 9 N -0.57 -29.39 5.29 -306.98 -1.62 -31.01 16 10 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 13 N -0.92 -49.70 13.05 21.67 0.28 -49.41 16 14 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 N -0.60 -14.14 1.89 -822.60 -1.55 -15.70 16 19 C 0.08 1.81 9.28 127.77 1.19 3.00 16 20 C 0.54 16.22 7.10 87.66 0.62 16.85 16 21 O -0.59 -22.76 16.23 -3.04 -0.05 -22.81 16 22 C -0.11 -2.61 0.87 -49.54 -0.04 -2.66 16 23 C -0.10 -1.68 5.39 33.57 0.18 -1.50 16 24 C -0.11 -1.50 6.41 33.56 0.22 -1.29 16 25 C -0.10 -1.79 5.14 -7.40 -0.04 -1.83 16 26 C -0.12 -2.75 6.20 32.14 0.20 -2.56 16 27 C -0.09 -2.44 4.64 32.12 0.15 -2.30 16 28 C -0.10 -2.62 5.68 33.35 0.19 -2.43 16 29 H 0.06 0.67 7.78 -2.39 -0.02 0.65 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.75 6.73 -2.38 -0.02 0.73 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.33 11.67 7.35 -89.69 -0.66 11.01 16 35 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 38 H 0.28 14.08 8.31 -92.71 -0.77 13.30 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.27 7.66 -2.39 -0.02 1.25 16 41 H 0.09 1.59 6.30 -2.39 -0.02 1.58 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.17 5.97 -2.39 -0.01 1.16 16 44 H 0.09 0.96 7.82 -2.39 -0.02 0.94 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.08 1.58 7.82 -2.38 -0.02 1.56 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 49 H 0.09 2.08 5.90 -2.38 -0.01 2.07 16 50 H 0.04 1.34 8.07 -2.39 -0.02 1.32 16 51 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -74.91 399.04 2.09 -72.82 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.45 Total: 44.78 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.33 Total: 13.13 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.72 Total: -118.61 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.10 Total: -57.66 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.91 2.09 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732425563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.252 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds