Wall clock time and date at job start Tue Mar 31 2020 20:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50695 * 120.00323 * 2 1 4 4 C 1.32995 * 119.99554 * 179.97438 * 2 1 3 5 5 C 1.47101 * 120.00340 * 352.12991 * 4 2 1 6 6 O 1.21621 * 119.99726 * 353.29877 * 5 4 2 7 7 N 1.34773 * 120.00282 * 173.29726 * 5 4 2 8 8 C 1.46923 * 120.62843 * 354.41990 * 7 5 4 9 9 C 1.53199 * 108.77446 * 233.60548 * 8 7 5 10 10 C 1.53032 * 109.31373 * 305.36835 * 9 8 7 11 11 C 1.53040 * 109.53980 * 61.36385 * 10 9 8 12 12 H 1.08996 * 109.49734 * 58.61792 * 11 10 9 13 13 C 1.53003 * 109.49747 * 178.68237 * 11 10 9 14 14 H 1.09002 * 109.46690 * 304.93075 * 13 11 10 15 15 C 1.52996 * 109.47150 * 64.93532 * 13 11 10 16 16 N 1.46902 * 109.46835 * 184.93904 * 13 11 10 17 17 C 1.46903 * 110.99675 * 155.00079 * 16 13 11 18 18 C 1.50703 * 109.46710 * 179.97438 * 17 16 13 19 19 O 1.21293 * 119.99925 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00021 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00259 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99938 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00054 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99897 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46997 * 89.99760 * 25 23 21 27 27 H 1.48501 * 109.47073 * 209.99780 * 25 23 21 28 28 H 1.48498 * 109.47285 * 329.99643 * 25 23 21 29 29 C 1.46935 * 120.60464 * 174.44126 * 7 5 4 30 30 H 1.08991 * 109.47165 * 263.68403 * 1 2 3 31 31 H 1.09006 * 109.47024 * 23.68231 * 1 2 3 32 32 H 1.09000 * 109.47140 * 143.68014 * 1 2 3 33 33 H 1.09005 * 109.46791 * 269.99765 * 3 2 1 34 34 H 1.08999 * 109.46944 * 29.99225 * 3 2 1 35 35 H 1.08995 * 109.47406 * 150.00238 * 3 2 1 36 36 H 1.07995 * 120.00198 * 172.13159 * 4 2 1 37 37 H 1.09007 * 109.58525 * 113.82687 * 8 7 5 38 38 H 1.08998 * 109.58950 * 353.39577 * 8 7 5 39 39 H 1.09001 * 109.49231 * 185.41381 * 9 8 7 40 40 H 1.09002 * 109.48977 * 65.32033 * 9 8 7 41 41 H 1.08999 * 109.45970 * 301.33933 * 10 9 8 42 42 H 1.09007 * 109.44909 * 181.37802 * 10 9 8 43 43 H 1.09000 * 109.46970 * 60.00160 * 15 13 11 44 44 H 1.09002 * 109.47278 * 299.99998 * 15 13 11 45 45 H 1.09005 * 109.46989 * 180.02562 * 15 13 11 46 46 H 1.00895 * 111.00340 * 31.03985 * 16 13 11 47 47 H 1.08995 * 109.46996 * 299.99230 * 17 16 13 48 48 H 1.08993 * 109.47370 * 59.99924 * 17 16 13 49 49 H 0.97002 * 119.99815 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00036 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.61903 * 6.62051 * 29 7 5 52 52 H 1.08996 * 109.56136 * 246.19266 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4468 -2.4197 0.1755 6 8 0.2599 -2.4097 0.4410 7 7 2.0975 -3.5923 0.0416 8 6 3.4992 -3.6246 -0.3977 9 6 3.6163 -4.5617 -1.6039 10 6 3.0404 -5.9316 -1.2384 11 6 1.5592 -5.7857 -0.8822 12 1 1.0219 -5.3583 -1.7287 13 6 0.9764 -7.1605 -0.5487 14 1 1.1573 -7.8429 -1.3792 15 6 1.6458 -7.7055 0.7145 16 7 -0.4699 -7.0373 -0.3223 17 6 -1.1541 -8.3105 -0.5850 18 6 -2.6323 -8.1457 -0.3422 19 8 -3.0723 -7.0733 0.0150 20 7 -3.4651 -9.1901 -0.5210 21 6 -4.8099 -9.0401 -0.3006 22 1 -5.2019 -8.0851 0.0166 23 6 -5.6684 -10.1171 -0.4844 24 7 -5.1914 -11.2793 -0.8700 25 14 -7.5006 -9.9129 -0.1835 26 1 -8.1646 -9.4880 -1.4420 27 1 -8.0753 -11.2058 0.2674 28 1 -7.7185 -8.8825 0.8634 29 6 1.4180 -4.8623 0.3320 30 1 -0.3633 -0.1130 1.0213 31 1 -0.3633 0.9412 -0.4128 32 1 -0.3633 -0.8280 -0.6087 33 1 2.4423 1.6196 -1.0277 34 1 1.6715 2.0647 0.5137 35 1 3.2130 1.1747 0.5138 36 1 3.2442 -1.1564 -0.1275 37 1 4.1279 -3.9925 0.4132 38 1 3.8162 -2.6213 -0.6823 39 1 4.6652 -4.6698 -1.8800 40 1 3.0596 -4.1452 -2.4435 41 1 3.5815 -6.3365 -0.3831 42 1 3.1449 -6.6075 -2.0872 43 1 1.4648 -7.0230 1.5449 44 1 2.7189 -7.7968 0.5465 45 1 1.2308 -8.6851 0.9518 46 1 -0.8614 -6.2942 -0.8814 47 1 -0.9864 -8.6061 -1.6206 48 1 -0.7604 -9.0786 0.0804 49 1 -3.1131 -10.0478 -0.8063 50 1 -5.7906 -12.0312 -0.9979 51 1 0.3623 -4.6759 0.5285 52 1 1.8767 -5.3308 1.2027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732517612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:48 Heat of formation + Delta-G solvation = -61.041423 kcal Electronic energy + Delta-G solvation = -29674.212775 eV Core-core repulsion = 25673.633702 eV Total energy + Delta-G solvation = -4000.579073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.49518 -38.73838 -37.97190 -36.06742 -35.49239 -33.89220 -32.96362 -31.65287 -31.09993 -29.23665 -28.13103 -27.85704 -26.60832 -25.35011 -24.51035 -23.46889 -21.68537 -20.61850 -19.30261 -19.05715 -18.12284 -17.82245 -17.47056 -16.15506 -15.96397 -15.43326 -15.20226 -14.99618 -14.77784 -14.46085 -14.36800 -14.27806 -14.14085 -13.85789 -13.61895 -13.39046 -13.19793 -13.07331 -12.75497 -12.61652 -12.48409 -12.34750 -12.06718 -11.94033 -11.87368 -11.79899 -11.65201 -11.44608 -11.20598 -11.04971 -10.97416 -10.81963 -10.55948 -10.48846 -10.34689 -10.15932 -9.56423 -9.45169 -9.32362 -8.59099 -8.36274 -7.98330 -7.89484 -6.36365 -3.76691 1.19764 2.94592 3.21626 3.22005 3.30056 3.36901 3.97868 4.10967 4.29576 4.37114 4.45958 4.59045 4.64058 4.74895 4.75815 4.88166 4.98456 5.13975 5.16821 5.17687 5.24265 5.29447 5.31191 5.36333 5.41973 5.45414 5.49155 5.50816 5.58804 5.65860 5.72438 5.76933 5.80826 5.86391 5.90527 5.93122 6.04109 6.06031 6.14065 6.19361 6.28273 6.33896 6.38404 6.44902 6.53314 7.32902 7.39533 7.60695 7.75063 8.12634 8.21470 8.67841 9.24020 9.60752 10.12940 10.81565 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002333 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.049852 B =11998.830763 C =13769.400731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.127 4.127 4 C -0.241 4.241 5 C 0.543 3.457 6 O -0.531 6.531 7 N -0.613 5.613 8 C 0.107 3.893 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.100 4.100 12 H 0.072 0.928 13 C 0.090 3.910 14 H 0.044 0.956 15 C -0.145 4.145 16 N -0.664 5.664 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.579 6.579 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.119 3.881 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.350 0.650 47 H 0.041 0.959 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.106 0.894 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.115 16.204 -1.767 29.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.183 4.183 4 C -0.262 4.262 5 C 0.334 3.666 6 O -0.410 6.410 7 N -0.346 5.346 8 C -0.016 4.016 9 C -0.173 4.173 10 C -0.153 4.153 11 C -0.120 4.120 12 H 0.091 0.909 13 C -0.020 4.020 14 H 0.062 0.938 15 C -0.202 4.202 16 N -0.297 5.297 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.463 6.463 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.003 4.003 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.170 0.830 47 H 0.059 0.941 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.124 0.876 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.113 16.641 -0.727 28.489 hybrid contribution -0.451 -0.787 -1.135 1.453 sum 22.662 15.854 -1.863 27.720 Atomic orbital electron populations 1.21146 0.90718 1.02348 1.03917 1.22605 0.97024 0.94395 0.89299 1.21006 1.00030 0.94515 1.02793 1.22441 1.00151 0.92187 1.11407 1.18566 0.86655 0.84023 0.77314 1.90825 1.14923 1.87069 1.48162 1.48041 1.12601 1.06424 1.67540 1.21761 0.82463 1.00700 0.96700 1.21917 1.01387 0.95947 0.98012 1.21608 0.95209 0.96674 1.01770 1.21651 0.96163 0.95460 0.98691 0.90940 1.21505 0.88747 0.94746 0.97037 0.93796 1.21930 0.98803 1.01538 0.97973 1.60142 1.00958 1.06275 1.62338 1.21709 0.94303 0.92789 0.99302 1.19851 0.87214 0.85582 0.84686 1.90543 1.77470 1.26943 1.51356 1.41864 1.07256 1.11302 1.59885 1.19706 0.81843 0.98494 1.42598 0.87956 1.25253 1.00633 0.94816 0.97364 1.69613 1.36279 1.01378 1.47247 0.85861 0.82101 0.77582 0.78773 1.20472 1.20967 1.19402 1.21750 1.00392 0.81849 0.96318 0.90061 0.92707 0.89305 0.90499 0.90813 0.91192 0.85650 0.91521 0.89759 0.90731 0.91519 0.91191 0.91613 0.91594 0.92741 0.92565 0.82978 0.94056 0.89679 0.77525 0.91965 0.87597 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.43 36.01 0.30 -1.04 16 2 C -0.03 -0.29 6.10 -101.17 -0.62 -0.90 16 3 C -0.13 -0.72 10.01 36.00 0.36 -0.36 16 4 C -0.24 -2.32 8.82 -37.81 -0.33 -2.65 16 5 C 0.54 7.08 7.47 -12.67 -0.09 6.99 16 6 O -0.53 -9.03 12.74 5.26 0.07 -8.96 16 7 N -0.61 -6.82 2.97 -174.15 -0.52 -7.34 16 8 C 0.11 0.78 6.30 -3.71 -0.02 0.76 16 9 C -0.13 -0.92 6.08 -26.61 -0.16 -1.09 16 10 C -0.11 -0.93 4.89 -26.69 -0.13 -1.06 16 11 C -0.10 -1.10 2.04 -90.50 -0.18 -1.29 16 12 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 13 C 0.09 1.12 2.39 -67.71 -0.16 0.96 16 14 H 0.04 0.53 7.80 -51.93 -0.40 0.13 16 15 C -0.14 -1.65 8.69 37.16 0.32 -1.33 16 16 N -0.66 -11.14 5.50 -107.99 -0.59 -11.74 16 17 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 18 C 0.44 10.83 7.82 -10.98 -0.09 10.74 16 19 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 20 N -0.57 -14.81 5.29 -10.96 -0.06 -14.87 16 21 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 22 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 25 Si 0.93 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.12 1.48 5.21 -3.71 -0.02 1.46 16 30 H 0.08 0.96 7.98 -51.93 -0.41 0.54 16 31 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.09 1.18 6.27 -51.93 -0.33 0.86 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.13 0.85 6.10 -52.49 -0.32 0.53 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.08 0.48 5.46 -51.93 -0.28 0.20 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.53 6.63 -51.93 -0.34 0.18 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.80 6.23 -51.93 -0.32 0.48 16 44 H 0.05 0.49 6.59 -51.93 -0.34 0.15 16 45 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 46 H 0.35 6.33 7.98 -39.29 -0.31 6.01 16 47 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 48 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 49 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.11 1.74 6.78 -51.93 -0.35 1.38 16 52 H 0.07 0.84 6.06 -51.93 -0.31 0.53 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -34.07 404.83 -8.86 -42.94 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -8.56 Total: 14.08 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.10 Total: 3.92 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.45 Total: -58.34 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.15 Total: -25.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.07 -8.86 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732517612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.106 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds