Wall clock time and date at job start Tue Mar 31 2020 20:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50695 * 120.00323 * 2 1 4 4 C 1.32995 * 119.99554 * 179.97438 * 2 1 3 5 5 C 1.47101 * 120.00340 * 352.12991 * 4 2 1 6 6 O 1.21621 * 119.99726 * 353.29877 * 5 4 2 7 7 N 1.34773 * 120.00282 * 173.29726 * 5 4 2 8 8 C 1.46923 * 120.62843 * 354.41990 * 7 5 4 9 9 C 1.53199 * 108.77446 * 233.60548 * 8 7 5 10 10 C 1.53032 * 109.31373 * 305.36835 * 9 8 7 11 11 C 1.53040 * 109.53980 * 61.36385 * 10 9 8 12 12 H 1.08996 * 109.49734 * 58.61792 * 11 10 9 13 13 C 1.53003 * 109.49747 * 178.68237 * 11 10 9 14 14 H 1.09002 * 109.46690 * 304.93075 * 13 11 10 15 15 C 1.52996 * 109.47150 * 64.93532 * 13 11 10 16 16 N 1.46902 * 109.46835 * 184.93904 * 13 11 10 17 17 C 1.46903 * 110.99675 * 155.00079 * 16 13 11 18 18 C 1.50703 * 109.46710 * 179.97438 * 17 16 13 19 19 O 1.21293 * 119.99925 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00021 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00259 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99938 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00054 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99897 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46997 * 89.99760 * 25 23 21 27 27 H 1.48501 * 109.47073 * 209.99780 * 25 23 21 28 28 H 1.48498 * 109.47285 * 329.99643 * 25 23 21 29 29 C 1.46935 * 120.60464 * 174.44126 * 7 5 4 30 30 H 1.08991 * 109.47165 * 263.68403 * 1 2 3 31 31 H 1.09006 * 109.47024 * 23.68231 * 1 2 3 32 32 H 1.09000 * 109.47140 * 143.68014 * 1 2 3 33 33 H 1.09005 * 109.46791 * 269.99765 * 3 2 1 34 34 H 1.08999 * 109.46944 * 29.99225 * 3 2 1 35 35 H 1.08995 * 109.47406 * 150.00238 * 3 2 1 36 36 H 1.07995 * 120.00198 * 172.13159 * 4 2 1 37 37 H 1.09007 * 109.58525 * 113.82687 * 8 7 5 38 38 H 1.08998 * 109.58950 * 353.39577 * 8 7 5 39 39 H 1.09001 * 109.49231 * 185.41381 * 9 8 7 40 40 H 1.09002 * 109.48977 * 65.32033 * 9 8 7 41 41 H 1.08999 * 109.45970 * 301.33933 * 10 9 8 42 42 H 1.09007 * 109.44909 * 181.37802 * 10 9 8 43 43 H 1.09000 * 109.46970 * 60.00160 * 15 13 11 44 44 H 1.09002 * 109.47278 * 299.99998 * 15 13 11 45 45 H 1.09005 * 109.46989 * 180.02562 * 15 13 11 46 46 H 1.00895 * 111.00340 * 31.03985 * 16 13 11 47 47 H 1.08995 * 109.46996 * 299.99230 * 17 16 13 48 48 H 1.08993 * 109.47370 * 59.99924 * 17 16 13 49 49 H 0.97002 * 119.99815 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00036 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.61903 * 6.62051 * 29 7 5 52 52 H 1.08996 * 109.56136 * 246.19266 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4468 -2.4197 0.1755 6 8 0.2599 -2.4097 0.4410 7 7 2.0975 -3.5923 0.0416 8 6 3.4992 -3.6246 -0.3977 9 6 3.6163 -4.5617 -1.6039 10 6 3.0404 -5.9316 -1.2384 11 6 1.5592 -5.7857 -0.8822 12 1 1.0219 -5.3583 -1.7287 13 6 0.9764 -7.1605 -0.5487 14 1 1.1573 -7.8429 -1.3792 15 6 1.6458 -7.7055 0.7145 16 7 -0.4699 -7.0373 -0.3223 17 6 -1.1541 -8.3105 -0.5850 18 6 -2.6323 -8.1457 -0.3422 19 8 -3.0723 -7.0733 0.0150 20 7 -3.4651 -9.1901 -0.5210 21 6 -4.8099 -9.0401 -0.3006 22 1 -5.2019 -8.0851 0.0166 23 6 -5.6684 -10.1171 -0.4844 24 7 -5.1914 -11.2793 -0.8700 25 14 -7.5006 -9.9129 -0.1835 26 1 -8.1646 -9.4880 -1.4420 27 1 -8.0753 -11.2058 0.2674 28 1 -7.7185 -8.8825 0.8634 29 6 1.4180 -4.8623 0.3320 30 1 -0.3633 -0.1130 1.0213 31 1 -0.3633 0.9412 -0.4128 32 1 -0.3633 -0.8280 -0.6087 33 1 2.4423 1.6196 -1.0277 34 1 1.6715 2.0647 0.5137 35 1 3.2130 1.1747 0.5138 36 1 3.2442 -1.1564 -0.1275 37 1 4.1279 -3.9925 0.4132 38 1 3.8162 -2.6213 -0.6823 39 1 4.6652 -4.6698 -1.8800 40 1 3.0596 -4.1452 -2.4435 41 1 3.5815 -6.3365 -0.3831 42 1 3.1449 -6.6075 -2.0872 43 1 1.4648 -7.0230 1.5449 44 1 2.7189 -7.7968 0.5465 45 1 1.2308 -8.6851 0.9518 46 1 -0.8614 -6.2942 -0.8814 47 1 -0.9864 -8.6061 -1.6206 48 1 -0.7604 -9.0786 0.0804 49 1 -3.1131 -10.0478 -0.8063 50 1 -5.7906 -12.0312 -0.9979 51 1 0.3623 -4.6759 0.5285 52 1 1.8767 -5.3308 1.2027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732517612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:47 Heat of formation + Delta-G solvation = -85.121175 kcal Electronic energy + Delta-G solvation = -29675.256952 eV Core-core repulsion = 25673.633702 eV Total energy + Delta-G solvation = -4001.623249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40605 -40.26105 -39.36456 -37.16845 -36.29231 -35.96109 -34.03293 -33.28911 -32.51989 -30.19843 -28.80752 -28.64628 -28.22340 -26.27917 -26.03637 -24.59962 -22.52006 -21.50462 -21.10403 -20.09704 -19.91232 -18.91900 -18.36648 -17.79248 -16.95366 -16.90362 -16.42556 -16.22838 -16.06501 -15.76013 -15.51355 -15.46132 -15.14653 -14.92897 -14.79272 -14.39478 -14.21756 -14.06121 -13.91328 -13.56523 -13.41582 -13.34138 -13.30826 -13.20572 -13.09619 -12.90958 -12.76494 -12.63922 -12.45146 -12.42294 -12.14451 -12.02448 -11.84051 -11.69954 -11.53832 -11.42238 -11.34001 -10.54009 -10.37041 -10.10567 -10.04290 -9.45862 -9.30891 -8.49241 -5.98075 0.41256 1.35453 1.38825 1.52215 2.02351 2.10853 2.27168 2.30797 2.89288 3.17457 3.46536 3.62013 3.71326 3.81823 3.89097 3.99902 4.10930 4.12497 4.28111 4.30815 4.36207 4.44213 4.46847 4.55162 4.56758 4.60406 4.62753 4.66485 4.73731 4.76955 4.86761 4.89940 4.94655 4.98918 5.04181 5.06199 5.08952 5.15621 5.19340 5.28122 5.37902 5.39419 5.51110 5.53542 5.58499 5.71655 5.89833 6.13406 6.35536 6.53527 6.57959 7.10141 7.27666 7.53126 8.09646 8.68210 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002333 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.049852 B =11998.830763 C =13769.400731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.030 4.030 3 C -0.121 4.121 4 C -0.247 4.247 5 C 0.526 3.474 6 O -0.589 6.589 7 N -0.611 5.611 8 C 0.100 3.900 9 C -0.130 4.130 10 C -0.110 4.110 11 C -0.090 4.090 12 H 0.051 0.949 13 C 0.090 3.910 14 H 0.059 0.941 15 C -0.141 4.141 16 N -0.681 5.681 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.267 1.267 28 H -0.276 1.276 29 C 0.123 3.877 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.337 0.663 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.055 0.945 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.470 16.263 -2.539 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.032 4.032 3 C -0.177 4.177 4 C -0.267 4.267 5 C 0.320 3.680 6 O -0.472 6.472 7 N -0.343 5.343 8 C -0.021 4.021 9 C -0.168 4.168 10 C -0.148 4.148 11 C -0.110 4.110 12 H 0.070 0.930 13 C -0.019 4.019 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.313 5.313 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.093 0.907 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.192 1.192 28 H -0.201 1.201 29 C 0.000 4.000 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.180 0.820 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.156 0.844 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.074 0.926 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.544 16.655 -1.521 31.373 hybrid contribution -1.493 -0.798 -0.890 1.912 sum 25.051 15.858 -2.411 29.746 Atomic orbital electron populations 1.21057 0.92808 1.02028 1.02263 1.22896 0.95950 0.96227 0.88096 1.21054 1.00273 0.92249 1.04156 1.22568 1.01570 0.90354 1.12204 1.19338 0.86331 0.85714 0.76651 1.90806 1.17505 1.87940 1.50943 1.48186 1.14157 1.05309 1.66657 1.22116 0.80005 1.02430 0.97585 1.21919 1.02990 0.94700 0.97165 1.21615 0.92374 0.97993 1.02777 1.21556 0.98486 0.93960 0.96998 0.93025 1.21662 0.85960 0.96039 0.98259 0.92324 1.21921 1.00664 1.00516 0.96715 1.60181 1.03421 1.05089 1.62650 1.21563 0.89710 0.94100 1.01058 1.20964 0.89667 0.84337 0.82753 1.90513 1.78996 1.28650 1.53014 1.41918 1.06843 1.11947 1.60268 1.19640 0.83575 0.98171 1.45087 0.90700 1.26047 1.04707 0.94194 0.96317 1.69666 1.37881 1.01758 1.46647 0.84928 0.76771 0.77933 0.78685 1.19514 1.19178 1.20065 1.21535 0.97838 0.83124 0.97501 0.91961 0.90514 0.92681 0.88806 0.90173 0.89413 0.82016 0.89614 0.87638 0.87485 0.92756 0.89689 0.90510 0.92922 0.89425 0.93289 0.84419 0.91705 0.87755 0.76906 0.91213 0.92645 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.43 71.24 0.60 -2.29 16 2 C -0.03 -0.52 6.10 -17.62 -0.11 -0.63 16 3 C -0.12 -1.04 10.01 71.23 0.71 -0.33 16 4 C -0.25 -4.51 8.82 23.43 0.21 -4.30 16 5 C 0.53 14.42 7.47 86.57 0.65 15.06 16 6 O -0.59 -22.26 12.74 -4.10 -0.05 -22.31 16 7 N -0.61 -13.63 2.97 -823.15 -2.45 -16.08 16 8 C 0.10 1.18 6.30 86.37 0.54 1.72 16 9 C -0.13 -1.35 6.08 30.67 0.19 -1.17 16 10 C -0.11 -1.45 4.89 30.62 0.15 -1.30 16 11 C -0.09 -1.97 2.04 -10.72 -0.02 -1.99 16 12 H 0.05 1.34 8.02 -2.39 -0.02 1.32 16 13 C 0.09 2.19 2.39 44.91 0.11 2.29 16 14 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 15 C -0.14 -2.98 8.69 71.98 0.63 -2.36 16 16 N -0.68 -23.69 5.50 -495.57 -2.73 -26.42 16 17 C 0.07 2.51 5.97 85.56 0.51 3.02 16 18 C 0.44 22.22 7.82 87.66 0.69 22.91 16 19 O -0.63 -37.64 15.78 -3.07 -0.05 -37.69 16 20 N -0.57 -30.93 5.29 -306.98 -1.62 -32.55 16 21 C -0.34 -19.97 9.68 84.04 0.81 -19.15 16 22 H 0.07 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 25 Si 0.99 44.62 29.55 68.60 2.03 46.65 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 29 C 0.12 3.21 5.21 86.36 0.45 3.66 16 30 H 0.06 1.64 7.98 -2.39 -0.02 1.62 16 31 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 32 H 0.05 1.65 6.27 -2.39 -0.01 1.64 16 33 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.09 0.49 8.07 -2.39 -0.02 0.47 16 36 H 0.16 1.65 6.10 -2.91 -0.02 1.63 16 37 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.11 0.81 5.46 -2.39 -0.01 0.80 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.91 6.63 -2.39 -0.02 0.90 16 42 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.05 1.26 6.23 -2.39 -0.01 1.25 16 44 H 0.09 1.28 6.59 -2.39 -0.02 1.26 16 45 H 0.05 1.11 7.45 -2.38 -0.02 1.10 16 46 H 0.34 13.13 7.98 -89.70 -0.72 12.41 16 47 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 48 H 0.10 3.47 7.44 -2.39 -0.02 3.45 16 49 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 50 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 51 H 0.05 2.03 6.78 -2.39 -0.02 2.01 16 52 H 0.08 1.89 6.06 -2.39 -0.01 1.88 16 Total: -1.00 -80.80 404.83 1.48 -79.32 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.51 Total: 44.76 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.58 Total: 14.91 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -6.51 Total: -125.63 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -0.10 Total: -60.00 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -80.80 1.48 -79.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732517612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.806 kcal (2) G-P(sol) polarization free energy of solvation -80.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds