Wall clock time and date at job start Tue Mar 31 2020 20:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34780 * 119.99465 * 2 1 4 4 O 1.21275 * 120.00458 * 354.98556 * 3 2 1 5 5 C 1.50707 * 119.99602 * 174.98186 * 3 2 1 6 6 C 1.50703 * 112.84756 * 53.20704 * 5 3 2 7 7 O 1.21282 * 120.00427 * 247.62738 * 6 5 3 8 8 N 1.34780 * 119.99845 * 67.62713 * 6 5 3 9 9 C 1.46933 * 120.63000 * 355.03741 * 8 6 5 10 10 C 1.52757 * 109.00553 * 233.58172 * 9 8 6 11 11 C 1.53038 * 109.38499 * 305.58488 * 10 9 8 12 12 C 1.53044 * 109.53642 * 61.24613 * 11 10 9 13 13 H 1.08996 * 109.49985 * 58.57939 * 12 11 10 14 14 C 1.52994 * 109.49776 * 178.68507 * 12 11 10 15 15 H 1.08997 * 109.47356 * 59.83256 * 14 12 11 16 16 C 1.53001 * 109.47241 * 179.83831 * 14 12 11 17 17 N 1.46504 * 109.47063 * 299.83088 * 14 12 11 18 18 C 1.36934 * 120.00124 * 155.00053 * 17 14 12 19 19 H 1.08002 * 119.99846 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99953 * 180.02562 * 18 17 14 21 21 N 1.31626 * 120.00075 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00194 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46989 * 90.00262 * 22 20 18 24 24 H 1.48498 * 109.47290 * 210.00168 * 22 20 18 25 25 H 1.48498 * 109.47098 * 330.00216 * 22 20 18 26 26 C 1.46922 * 120.63311 * 175.31540 * 8 6 5 27 27 C 1.53777 * 113.61693 * 281.90680 * 5 3 2 28 28 C 1.53783 * 87.08172 * 220.01770 * 27 5 3 29 29 C 1.53777 * 113.61585 * 184.40490 * 5 3 2 30 30 H 1.09007 * 109.46741 * 60.00474 * 1 2 3 31 31 H 1.08994 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47260 * 300.00354 * 1 2 3 33 33 H 0.96998 * 120.00137 * 179.72051 * 2 1 3 34 34 H 1.09000 * 109.58449 * 353.41609 * 9 8 6 35 35 H 1.09002 * 109.58483 * 113.84148 * 9 8 6 36 36 H 1.09007 * 109.55946 * 185.55243 * 10 9 8 37 37 H 1.08997 * 109.36048 * 65.50344 * 10 9 8 38 38 H 1.08999 * 109.46289 * 301.22211 * 11 10 9 39 39 H 1.09002 * 109.45745 * 181.25970 * 11 10 9 40 40 H 1.09005 * 109.46895 * 299.99561 * 16 14 12 41 41 H 1.08997 * 109.47415 * 59.99462 * 16 14 12 42 42 H 1.08996 * 109.47382 * 179.97438 * 16 14 12 43 43 H 0.97005 * 120.00170 * 335.00842 * 17 14 12 44 44 H 0.96998 * 120.00361 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58545 * 246.16035 * 26 8 6 46 46 H 1.09000 * 109.58613 * 6.57855 * 26 8 6 47 47 H 1.09005 * 113.61051 * 334.56299 * 27 5 3 48 48 H 1.08995 * 113.61827 * 105.47012 * 27 5 3 49 49 H 1.08994 * 113.61440 * 270.88261 * 28 27 5 50 50 H 1.09002 * 113.61667 * 139.97484 * 28 27 5 51 51 H 1.08999 * 113.61486 * 254.53613 * 29 5 3 52 52 H 1.09006 * 113.61335 * 25.43252 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5359 2.2155 -0.0918 5 6 3.6416 1.1698 0.1142 6 6 4.3079 0.2912 -0.9130 7 8 4.8888 -0.7151 -0.5652 8 7 4.2583 0.6236 -2.2182 9 6 3.4684 1.7784 -2.6671 10 6 2.5110 1.3281 -3.7690 11 6 3.3048 0.6386 -4.8811 12 6 4.0093 -0.5971 -4.3164 13 1 3.2690 -1.2775 -3.8957 14 6 4.7759 -1.3040 -5.4359 15 1 5.5150 -0.6224 -5.8568 16 6 5.4833 -2.5370 -4.8699 17 7 3.8393 -1.7167 -6.4841 18 6 4.2818 -1.8901 -7.7683 19 1 5.3215 -1.7230 -8.0083 20 6 3.3942 -2.2806 -8.7615 21 7 3.8197 -2.4477 -9.9958 22 14 1.5962 -2.5704 -8.3461 23 1 0.8392 -1.3039 -8.5136 24 1 1.0386 -3.6041 -9.2547 25 1 1.4815 -3.0335 -6.9399 26 6 4.9882 -0.1653 -3.2200 27 6 4.1510 0.9407 1.5469 28 6 5.2209 2.0055 1.2528 29 6 4.2499 2.5791 0.2072 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9501 -0.8400 0.0041 34 1 2.8970 2.1781 -1.8294 35 1 4.1349 2.5474 -3.0576 36 1 1.9907 2.1947 -4.1771 37 1 1.7848 0.6295 -3.3535 38 1 4.0475 1.3299 -5.2793 39 1 2.6256 0.3367 -5.6784 40 1 6.1802 -2.2300 -4.0900 41 1 4.7443 -3.2187 -4.4489 42 1 6.0291 -3.0409 -5.6675 43 1 2.9055 -1.8671 -6.2684 44 1 3.1996 -2.7210 -10.6898 45 1 5.7811 0.4421 -3.6565 46 1 5.4194 -1.0476 -2.7469 47 1 3.4386 1.2385 2.3164 48 1 4.5604 -0.0560 1.7107 49 1 6.1355 1.5981 0.8221 50 1 5.4089 2.6784 2.0894 51 1 4.7392 2.9049 -0.7107 52 1 3.5646 3.3248 0.6104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732529721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:49 Heat of formation + Delta-G solvation = -39.338037 kcal Electronic energy + Delta-G solvation = -31725.679071 eV Core-core repulsion = 27726.041127 eV Total energy + Delta-G solvation = -3999.637943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78085 -39.52383 -38.41625 -37.11494 -35.70364 -34.92683 -32.84652 -32.15142 -30.57531 -28.96887 -28.30309 -26.54481 -25.90956 -25.09464 -24.28310 -22.61712 -21.81682 -21.33539 -20.36054 -19.78821 -18.99279 -18.18809 -17.57606 -16.66273 -16.48709 -16.09938 -15.58016 -15.36557 -14.91869 -14.71413 -14.43891 -14.29249 -14.07020 -14.00737 -13.52715 -13.28979 -13.09195 -12.96768 -12.82614 -12.71771 -12.64305 -12.48870 -12.42312 -12.26726 -11.73510 -11.60377 -11.38527 -11.24960 -11.01186 -10.96271 -10.84508 -10.78173 -10.59343 -10.31183 -10.27188 -10.15683 -9.95173 -9.74146 -9.58864 -9.49977 -8.93965 -8.73289 -7.27612 -5.77852 -3.12884 2.09911 2.27406 2.73214 2.85116 3.35167 3.37859 3.43510 4.02131 4.07762 4.11182 4.35898 4.39062 4.57604 4.74144 4.85886 4.92942 4.94786 5.01369 5.05503 5.17076 5.24437 5.28224 5.39507 5.42167 5.46336 5.48486 5.53788 5.55306 5.61774 5.62464 5.65286 5.74334 5.80859 5.87970 5.92360 5.96320 6.00867 6.08106 6.13153 6.33971 6.38720 6.39589 6.52334 6.60850 6.81536 7.02026 7.03548 7.19744 7.76819 7.89269 7.98682 8.41436 9.19828 9.92502 10.12582 11.40709 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003288 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.623998 B = 8513.084048 C = 9223.720816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.729 5.729 3 C 0.538 3.462 4 O -0.529 6.529 5 C -0.138 4.138 6 C 0.540 3.460 7 O -0.531 6.531 8 N -0.598 5.598 9 C 0.094 3.906 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.106 4.106 13 H 0.068 0.932 14 C 0.186 3.814 15 H 0.057 0.943 16 C -0.168 4.168 17 N -0.746 5.746 18 C -0.239 4.239 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.116 3.884 27 C -0.107 4.107 28 C -0.140 4.140 29 C -0.108 4.108 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.406 0.594 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 9.612 24.971 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.323 3.677 4 O -0.406 6.406 5 C -0.145 4.145 6 C 0.326 3.674 7 O -0.407 6.407 8 N -0.330 5.330 9 C -0.029 4.029 10 C -0.171 4.171 11 C -0.149 4.149 12 C -0.126 4.126 13 H 0.086 0.914 14 C 0.076 3.924 15 H 0.075 0.925 16 C -0.228 4.228 17 N -0.388 5.388 18 C -0.369 4.369 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.712 3.288 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.006 4.006 27 C -0.145 4.145 28 C -0.177 4.177 29 C -0.146 4.146 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.098 0.902 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.047 9.818 24.858 26.805 hybrid contribution -1.318 -0.780 -0.038 1.532 sum -3.365 9.037 24.820 26.627 Atomic orbital electron populations 1.21598 0.79048 1.02639 1.02464 1.45831 1.08116 1.08849 1.75155 1.19879 0.88332 0.83921 0.75556 1.90715 1.69533 1.31257 1.49065 1.22390 0.92626 1.00693 0.98748 1.19487 0.80377 0.85031 0.82485 1.90710 1.44262 1.25854 1.79920 1.48094 1.48703 1.30234 1.05943 1.21986 0.94214 0.87641 0.99050 1.21844 0.97930 1.01085 0.96271 1.21527 0.99690 0.96397 0.97247 1.21796 0.97851 0.97299 0.95630 0.91360 1.20126 0.91558 0.93414 0.87296 0.92518 1.22482 1.00061 1.00137 1.00122 1.42758 1.06952 1.83177 1.05950 1.19062 0.96284 1.38580 0.82970 0.89200 1.24648 0.97407 1.01734 0.95334 1.69697 1.34255 1.53877 1.00458 0.86590 0.87032 0.77835 0.77310 1.21124 1.21809 1.20446 1.21836 0.93960 0.96250 0.88515 1.22806 0.98200 1.01857 0.91634 1.22859 0.97458 0.98033 0.99377 1.22968 0.98024 0.92978 1.00640 0.91818 0.90406 0.92086 0.76024 0.88952 0.90960 0.90653 0.92071 0.91599 0.90454 0.93962 0.93657 0.92315 0.80752 0.93097 0.91016 0.88460 0.89053 0.88943 0.89537 0.90307 0.90246 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.71 59.85 0.64 1.30 16 2 N -0.73 -6.74 5.64 -67.07 -0.38 -7.12 16 3 C 0.54 5.83 5.39 -10.98 -0.06 5.77 16 4 O -0.53 -6.94 14.93 5.56 0.08 -6.86 16 5 C -0.14 -1.38 0.58 -156.00 -0.09 -1.47 16 6 C 0.54 6.56 6.02 -10.98 -0.07 6.49 16 7 O -0.53 -7.76 15.39 5.56 0.09 -7.67 16 8 N -0.60 -7.17 2.98 -173.03 -0.52 -7.68 16 9 C 0.09 1.03 4.97 -3.93 -0.02 1.01 16 10 C -0.13 -1.61 6.06 -26.84 -0.16 -1.77 16 11 C -0.11 -1.60 5.03 -26.69 -0.13 -1.73 16 12 C -0.11 -1.58 1.97 -90.50 -0.18 -1.76 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 14 C 0.19 3.39 2.47 -67.93 -0.17 3.22 16 15 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 16 C -0.17 -2.91 9.14 37.16 0.34 -2.57 16 17 N -0.75 -16.92 4.22 -53.43 -0.23 -17.15 16 18 C -0.24 -6.56 10.41 -15.06 -0.16 -6.71 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 22 Si 0.88 21.89 27.73 -169.99 -4.71 17.17 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 26 C 0.12 1.53 5.20 -3.71 -0.02 1.51 16 27 C -0.11 -0.90 7.10 -25.92 -0.18 -1.08 16 28 C -0.14 -1.07 7.81 -25.92 -0.20 -1.28 16 29 C -0.11 -0.94 5.91 -25.92 -0.15 -1.09 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.41 3.50 8.54 -40.82 -0.35 3.16 16 34 H 0.09 1.03 3.57 -51.93 -0.19 0.84 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.04 0.62 6.56 -51.93 -0.34 0.28 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.36 8.14 5.46 -40.82 -0.22 7.92 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.10 1.38 5.61 -51.93 -0.29 1.08 16 47 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 48 H 0.09 0.84 7.36 -51.93 -0.38 0.46 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.08 0.68 7.12 -51.93 -0.37 0.31 16 52 H 0.10 0.91 7.49 -51.93 -0.39 0.52 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -32.84 397.39 -8.45 -41.29 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.84 Total: 10.50 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.71 Total: -0.12 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.34 Total: -60.29 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.17 Total: -14.53 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.84 -8.45 -41.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.951 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds