Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99592 * 2 1 4 4 O 1.21273 * 120.00598 * 354.97525 * 3 2 1 5 5 C 1.50705 * 119.99355 * 174.97391 * 3 2 1 6 6 C 1.50702 * 112.85031 * 55.14444 * 5 3 2 7 7 O 1.21283 * 119.99900 * 245.76164 * 6 5 3 8 8 N 1.34780 * 120.00291 * 65.75427 * 6 5 3 9 9 C 1.46923 * 120.62914 * 355.44238 * 8 6 5 10 10 C 1.53186 * 108.77427 * 126.36685 * 9 8 6 11 11 C 1.53039 * 109.31295 * 54.63544 * 10 9 8 12 12 C 1.53034 * 109.53856 * 298.63245 * 11 10 9 13 13 H 1.09000 * 109.50098 * 301.41387 * 12 11 10 14 14 C 1.53002 * 109.50166 * 181.34737 * 12 11 10 15 15 H 1.08991 * 109.47648 * 184.99916 * 14 12 11 16 16 C 1.53004 * 109.46969 * 305.00396 * 14 12 11 17 17 N 1.46501 * 109.46736 * 64.99837 * 14 12 11 18 18 C 1.36938 * 119.99564 * 155.00229 * 17 14 12 19 19 H 1.07994 * 120.00488 * 359.97438 * 18 17 14 20 20 C 1.38814 * 119.99696 * 180.02562 * 18 17 14 21 21 N 1.31618 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00043 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47176 * 59.99832 * 22 20 18 24 24 H 1.48498 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47150 * 299.99998 * 22 20 18 26 26 C 1.46927 * 120.62926 * 175.16440 * 8 6 5 27 27 C 1.53770 * 113.61697 * 283.94095 * 5 3 2 28 28 C 1.53956 * 87.02336 * 220.04955 * 27 5 3 29 29 C 1.53783 * 113.61018 * 186.33205 * 5 3 2 30 30 H 1.09003 * 109.47198 * 60.00273 * 1 2 3 31 31 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47217 * 300.00538 * 1 2 3 33 33 H 0.96993 * 119.99930 * 179.72165 * 2 1 3 34 34 H 1.09006 * 109.58955 * 246.15476 * 9 8 6 35 35 H 1.08997 * 109.58969 * 6.43579 * 9 8 6 36 36 H 1.09007 * 109.49887 * 174.58772 * 10 9 8 37 37 H 1.08996 * 109.49877 * 294.64962 * 10 9 8 38 38 H 1.09001 * 109.45926 * 58.65408 * 11 10 9 39 39 H 1.09004 * 109.46050 * 178.62601 * 11 10 9 40 40 H 1.08999 * 109.47016 * 59.99508 * 16 14 12 41 41 H 1.09002 * 109.46635 * 179.97438 * 16 14 12 42 42 H 1.09001 * 109.46938 * 299.99644 * 16 14 12 43 43 H 0.96995 * 120.00309 * 335.00808 * 17 14 12 44 44 H 0.97001 * 119.99701 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58638 * 353.41409 * 26 8 6 46 46 H 1.09000 * 109.58540 * 113.84590 * 26 8 6 47 47 H 1.08997 * 113.61760 * 334.57262 * 27 5 3 48 48 H 1.09007 * 113.61451 * 105.47037 * 27 5 3 49 49 H 1.08998 * 113.53624 * 270.81603 * 28 27 5 50 50 H 1.08999 * 113.66837 * 139.92987 * 28 27 5 51 51 H 1.08998 * 113.61662 * 254.53273 * 29 5 3 52 52 H 1.09000 * 113.61609 * 25.35445 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5360 2.2155 -0.0920 5 6 3.6415 1.1697 0.1144 6 6 4.3102 0.3278 -0.9417 7 8 4.9223 -0.6699 -0.6241 8 7 4.2278 0.6835 -2.2391 9 6 3.4081 1.8315 -2.6500 10 6 4.2768 2.7883 -3.4725 11 6 4.9129 2.0221 -4.6346 12 6 5.8077 0.9090 -4.0850 13 1 6.5767 1.3427 -3.4456 14 6 6.4695 0.1651 -5.2467 15 1 7.0358 -0.6821 -4.8602 16 6 5.3922 -0.3382 -6.2097 17 7 7.3733 1.0736 -5.9567 18 6 8.4298 0.5706 -6.6680 19 1 8.5971 -0.4956 -6.7052 20 6 9.2865 1.4314 -7.3403 21 7 9.0830 2.7310 -7.2945 22 14 10.7282 0.7455 -8.3100 23 1 10.2237 -0.1608 -9.3726 24 1 11.4845 1.8631 -8.9298 25 1 11.6231 -0.0112 -7.3978 26 6 4.9609 -0.0658 -3.2687 27 6 4.1514 0.8915 1.5381 28 6 5.2186 1.9708 1.2805 29 6 4.2463 2.5767 0.2546 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9500 -0.8400 0.0041 34 1 2.5714 1.4847 -3.2565 35 1 3.0303 2.3457 -1.7663 36 1 3.6580 3.5957 -3.8644 37 1 5.0597 3.2047 -2.8388 38 1 4.1293 1.5856 -5.2540 39 1 5.5121 2.7060 -5.2358 40 1 4.8259 0.5091 -6.5962 41 1 5.8638 -0.8678 -7.0376 42 1 4.7198 -1.0141 -5.6814 43 1 7.2233 2.0313 -5.9229 44 1 9.6819 3.3325 -7.7640 45 1 5.6095 -0.8014 -2.7930 46 1 4.2534 -0.5704 -3.9266 47 1 3.4384 1.1598 2.3176 48 1 4.5636 -0.1095 1.6665 49 1 6.1343 1.5803 0.8364 50 1 5.4050 2.6157 2.1392 51 1 4.7348 2.9343 -0.6518 52 1 3.5586 3.3070 0.6811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732529722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -40.919465 kcal Electronic energy + Delta-G solvation = -31490.984796 eV Core-core repulsion = 27491.278276 eV Total energy + Delta-G solvation = -3999.706519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71807 -39.50944 -38.36201 -37.07239 -35.53416 -34.93113 -32.86819 -31.91303 -30.20480 -28.84263 -27.82448 -26.43257 -25.84948 -25.15782 -24.42716 -22.83010 -22.08464 -21.28905 -20.71992 -18.97247 -18.55529 -18.22677 -17.17166 -16.56620 -16.46544 -16.09205 -15.48693 -15.25330 -14.88085 -14.69106 -14.42555 -14.32974 -14.15544 -13.74872 -13.63584 -13.31430 -12.97621 -12.87608 -12.80911 -12.71550 -12.66337 -12.40401 -12.27297 -12.02442 -11.65166 -11.40857 -11.22360 -11.11914 -10.89928 -10.82395 -10.72133 -10.66874 -10.54546 -10.28318 -10.14278 -10.08878 -9.87546 -9.65847 -9.59831 -9.51638 -8.89465 -8.61961 -6.94952 -5.75593 -3.03740 2.14062 2.31645 2.81975 2.85035 3.44751 3.49333 3.50036 4.10564 4.14993 4.18426 4.39479 4.49305 4.59764 4.84378 4.85835 5.01919 5.02614 5.11283 5.14251 5.20197 5.34539 5.38637 5.41292 5.49680 5.51067 5.57166 5.62323 5.66391 5.70093 5.72878 5.82147 5.87453 5.88430 5.97045 5.99741 6.02477 6.08549 6.19592 6.24143 6.40478 6.45267 6.52642 6.68765 6.73427 6.91182 7.02729 7.13472 7.28241 7.71275 7.77685 7.96982 8.43573 9.54672 10.12549 10.47320 11.47182 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.002787 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.051866 B =10045.043896 C =10317.168726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.731 5.731 3 C 0.538 3.462 4 O -0.528 6.528 5 C -0.137 4.137 6 C 0.540 3.460 7 O -0.532 6.532 8 N -0.597 5.597 9 C 0.094 3.906 10 C -0.133 4.133 11 C -0.114 4.114 12 C -0.103 4.103 13 H 0.074 0.926 14 C 0.180 3.820 15 H 0.047 0.953 16 C -0.168 4.168 17 N -0.722 5.722 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.116 3.884 27 C -0.107 4.107 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.405 0.595 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.683 -3.259 17.476 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.382 5.382 3 C 0.323 3.677 4 O -0.405 6.405 5 C -0.144 4.144 6 C 0.326 3.674 7 O -0.408 6.408 8 N -0.328 5.328 9 C -0.029 4.029 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.123 4.123 13 H 0.092 0.908 14 C 0.070 3.930 15 H 0.065 0.935 16 C -0.228 4.228 17 N -0.364 5.364 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.006 4.006 27 C -0.145 4.145 28 C -0.177 4.177 29 C -0.147 4.147 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.679 -3.131 17.485 25.061 hybrid contribution 0.857 -0.395 -0.777 1.223 sum -16.822 -3.526 16.708 23.970 Atomic orbital electron populations 1.21582 0.79174 1.02490 1.02460 1.45831 1.08016 1.08871 1.75470 1.19945 0.88427 0.83856 0.75480 1.90714 1.69581 1.31258 1.48906 1.22389 0.92389 1.01127 0.98490 1.19474 0.80565 0.84831 0.82526 1.90706 1.43001 1.26181 1.80950 1.48092 1.47376 1.31314 1.06062 1.22058 0.93292 0.86929 1.00574 1.21932 0.99485 0.97808 0.97931 1.21613 0.99064 0.97664 0.96856 1.21699 0.97133 0.96047 0.97437 0.90752 1.20110 0.90363 0.92775 0.89771 0.93459 1.22569 0.99332 1.00188 1.00737 1.42423 1.29948 1.05203 1.58853 1.19201 1.02797 0.92066 1.22738 0.91285 1.24718 0.99575 0.95344 1.01341 1.69645 1.39835 1.01152 1.47651 0.86285 0.82584 0.77500 0.79929 1.21337 1.21748 1.21315 1.21767 0.95402 0.94488 0.88926 1.22839 0.98254 1.01807 0.91630 1.22891 0.97561 0.97693 0.99573 1.22990 0.98061 0.92799 1.00891 0.91920 0.90487 0.92096 0.76066 0.91490 0.88780 0.90740 0.91446 0.91621 0.90466 0.93061 0.92913 0.94521 0.78164 0.93518 0.89044 0.91001 0.89137 0.88955 0.89389 0.90302 0.89954 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.71 59.85 0.64 1.21 16 2 N -0.73 -6.24 5.65 -67.07 -0.38 -6.62 16 3 C 0.54 5.80 5.44 -10.98 -0.06 5.74 16 4 O -0.53 -6.94 14.96 5.56 0.08 -6.85 16 5 C -0.14 -1.46 0.57 -156.00 -0.09 -1.55 16 6 C 0.54 6.98 6.11 -10.98 -0.07 6.91 16 7 O -0.53 -8.20 15.38 5.55 0.09 -8.11 16 8 N -0.60 -7.62 2.98 -173.03 -0.52 -8.13 16 9 C 0.09 1.10 5.17 -3.72 -0.02 1.08 16 10 C -0.13 -1.64 6.03 -26.61 -0.16 -1.80 16 11 C -0.11 -1.68 4.52 -26.69 -0.12 -1.80 16 12 C -0.10 -1.65 2.26 -90.72 -0.20 -1.86 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 14 C 0.18 3.47 2.67 -67.93 -0.18 3.29 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 C -0.17 -2.92 8.76 37.16 0.33 -2.60 16 17 N -0.72 -17.66 5.06 -53.43 -0.27 -17.93 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.12 1.63 5.55 -3.93 -0.02 1.61 16 27 C -0.11 -0.98 7.10 -25.83 -0.18 -1.17 16 28 C -0.14 -1.29 7.81 -25.82 -0.20 -1.49 16 29 C -0.11 -1.10 5.75 -25.91 -0.15 -1.25 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.41 3.11 8.61 -40.82 -0.35 2.75 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.09 3.45 -51.93 -0.18 0.91 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.86 7.51 -51.93 -0.39 0.47 16 38 H 0.07 0.93 6.43 -51.93 -0.33 0.59 16 39 H 0.08 1.33 6.74 -51.93 -0.35 0.98 16 40 H 0.05 0.88 6.38 -51.93 -0.33 0.55 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.53 6.46 -51.93 -0.34 0.19 16 43 H 0.38 9.89 6.36 -40.82 -0.26 9.63 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 1.40 7.03 -51.93 -0.37 1.03 16 46 H 0.07 0.95 6.33 -51.93 -0.33 0.62 16 47 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 48 H 0.09 0.91 7.34 -51.93 -0.38 0.52 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.08 0.88 6.53 -51.93 -0.34 0.54 16 52 H 0.10 1.02 7.52 -51.93 -0.39 0.63 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -32.29 394.12 -8.62 -40.91 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.53 Total: 11.52 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.74 Total: -0.84 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.44 Total: -59.97 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.17 Total: -14.96 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.29 -8.62 -40.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.009 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds