Wall clock time and date at job start Tue Mar 31 2020 20:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00115 * 2 1 4 4 O 1.21280 * 119.99756 * 354.85717 * 3 2 1 5 5 C 1.50698 * 120.00100 * 174.85503 * 3 2 1 6 6 C 1.50706 * 112.84937 * 305.22650 * 5 3 2 7 7 O 1.21280 * 119.99487 * 117.51631 * 6 5 3 8 8 N 1.34770 * 119.99749 * 297.52062 * 6 5 3 9 9 C 1.46923 * 120.63515 * 356.50297 * 8 6 5 10 10 C 1.53188 * 108.77870 * 233.58838 * 9 8 6 11 11 C 1.53034 * 109.31411 * 305.36786 * 10 9 8 12 12 C 1.53041 * 109.54081 * 61.36323 * 11 10 9 13 13 H 1.09002 * 109.52103 * 58.60023 * 12 11 10 14 14 C 1.53001 * 109.49712 * 178.68524 * 12 11 10 15 15 H 1.08999 * 109.47116 * 179.83710 * 14 12 11 16 16 C 1.52999 * 109.47233 * 59.83908 * 14 12 11 17 17 N 1.46499 * 109.46915 * 299.83780 * 14 12 11 18 18 C 1.36936 * 119.99679 * 205.00166 * 17 14 12 19 19 H 1.08004 * 120.00224 * 359.97438 * 18 17 14 20 20 C 1.38813 * 119.99970 * 180.02562 * 18 17 14 21 21 N 1.31618 * 119.99720 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00021 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47204 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46769 * 119.99607 * 22 20 18 25 25 H 1.48501 * 109.47060 * 239.99694 * 22 20 18 26 26 C 1.46927 * 120.62886 * 176.48628 * 8 6 5 27 27 C 1.53782 * 113.68928 * 76.49060 * 5 3 2 28 28 C 1.53789 * 87.07883 * 89.12956 * 27 5 3 29 29 C 1.53781 * 113.61599 * 174.02870 * 5 3 2 30 30 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46712 * 299.99712 * 1 2 3 32 32 H 1.08991 * 109.47725 * 59.99708 * 1 2 3 33 33 H 0.97001 * 119.99719 * 179.97438 * 2 1 3 34 34 H 1.09004 * 109.58549 * 353.37769 * 9 8 6 35 35 H 1.09004 * 109.58322 * 113.80014 * 9 8 6 36 36 H 1.09002 * 109.49317 * 65.31717 * 10 9 8 37 37 H 1.09002 * 109.49493 * 185.38008 * 10 9 8 38 38 H 1.09005 * 109.45756 * 301.34356 * 11 10 9 39 39 H 1.09006 * 109.46101 * 181.38574 * 11 10 9 40 40 H 1.08999 * 109.46907 * 299.99930 * 16 14 12 41 41 H 1.09001 * 109.46959 * 59.99781 * 16 14 12 42 42 H 1.08998 * 109.47228 * 179.97438 * 16 14 12 43 43 H 0.97000 * 120.00176 * 24.99932 * 17 14 12 44 44 H 0.97010 * 119.99746 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.58789 * 6.62684 * 26 8 6 46 46 H 1.08993 * 109.58529 * 246.20256 * 26 8 6 47 47 H 1.08998 * 113.61700 * 203.67368 * 27 5 3 48 48 H 1.08998 * 113.61848 * 334.58258 * 27 5 3 49 49 H 1.09002 * 113.61313 * 270.88494 * 28 27 5 50 50 H 1.08995 * 113.61227 * 139.98254 * 28 27 5 51 51 H 1.09001 * 113.61374 * 25.35009 * 29 5 3 52 52 H 1.08998 * 113.61196 * 156.25474 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5361 2.2154 -0.0942 5 6 3.6413 1.1698 0.1170 6 6 4.1353 0.4214 1.3283 7 8 4.8324 -0.5615 1.1911 8 7 3.8022 0.8444 2.5638 9 6 3.0227 2.0760 2.7487 10 6 3.7731 2.9937 3.7189 11 6 4.0622 2.2324 5.0146 12 6 4.9488 1.0225 4.7105 13 1 5.8773 1.3583 4.2487 14 6 5.2641 0.2808 6.0110 15 1 5.8931 -0.5824 5.7936 16 6 3.9602 -0.1887 6.6594 17 7 5.9690 1.1803 6.9276 18 6 6.7893 0.6658 7.8959 19 1 6.9162 -0.4031 7.9842 20 6 7.4568 1.5181 8.7648 21 7 7.3017 2.8207 8.6575 22 14 8.5752 0.8162 10.0862 23 1 8.5776 -0.6661 9.9966 24 1 9.9556 1.3267 9.8886 25 1 8.0811 1.2300 11.4240 26 6 4.2115 0.0825 3.7515 27 6 4.3631 0.7809 -1.1840 28 6 4.3362 2.2737 -1.5526 29 6 4.2694 2.5643 -0.0440 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8898 33 1 1.9500 -0.8401 0.0004 34 1 2.9016 2.5793 1.7894 35 1 2.0439 1.8305 3.1610 36 1 4.7125 3.3113 3.2662 37 1 3.1613 3.8685 3.9391 38 1 3.1238 1.8937 5.4538 39 1 4.5745 2.8908 5.7161 40 1 3.3312 0.6745 6.8768 41 1 3.4358 -0.8580 5.9773 42 1 4.1849 -0.7176 7.5856 43 1 5.8547 2.1403 6.8485 44 1 7.7685 3.4163 9.2645 45 1 4.8750 -0.7296 3.4540 46 1 3.3298 -0.3255 4.2455 47 1 5.3675 0.3883 -1.0256 48 1 3.7632 0.1567 -1.8463 49 1 3.4395 2.5734 -2.0951 50 1 5.2543 2.6235 -2.0244 51 1 3.5938 3.3798 0.2141 52 1 5.2481 2.6592 0.4262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732529723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:55 Heat of formation + Delta-G solvation = -39.730363 kcal Electronic energy + Delta-G solvation = -31441.639547 eV Core-core repulsion = 27441.984591 eV Total energy + Delta-G solvation = -3999.654956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70910 -39.56127 -38.23872 -37.14440 -35.50864 -34.94885 -32.84325 -31.91779 -30.19270 -28.77072 -27.82872 -26.60274 -25.89582 -25.01632 -24.41636 -22.75830 -22.05312 -21.66008 -20.19728 -19.47218 -18.58472 -17.96410 -17.15596 -16.55730 -16.43083 -16.14369 -15.41638 -15.29539 -14.97664 -14.75691 -14.41169 -14.29028 -14.03172 -13.81236 -13.57627 -13.28769 -12.99097 -12.93532 -12.85322 -12.69893 -12.64979 -12.42426 -12.30030 -12.01345 -11.58997 -11.36745 -11.31696 -11.12749 -10.92512 -10.85414 -10.74524 -10.65630 -10.51200 -10.29556 -10.19382 -10.04856 -9.83134 -9.64439 -9.56490 -9.52930 -8.90120 -8.58331 -6.94632 -5.75920 -3.03861 2.10654 2.37109 2.78567 2.87599 3.43716 3.49729 3.51616 4.09915 4.13043 4.26044 4.33769 4.45247 4.59757 4.82077 4.86441 5.01759 5.04377 5.11088 5.12974 5.21135 5.33683 5.39053 5.41617 5.45934 5.51735 5.56097 5.61016 5.63072 5.68550 5.69362 5.82672 5.87532 5.90117 5.95917 6.00917 6.02397 6.04932 6.19937 6.25273 6.40760 6.47300 6.53657 6.70401 6.75304 6.91223 7.00992 7.14180 7.31624 7.72270 7.75852 8.00622 8.43357 9.54613 10.12639 10.47324 11.47009 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.002728 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.266559 B =10259.749839 C =10483.021756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.730 5.730 3 C 0.548 3.452 4 O -0.525 6.525 5 C -0.139 4.139 6 C 0.531 3.469 7 O -0.534 6.534 8 N -0.598 5.598 9 C 0.096 3.904 10 C -0.133 4.133 11 C -0.114 4.114 12 C -0.102 4.102 13 H 0.073 0.927 14 C 0.180 3.820 15 H 0.047 0.953 16 C -0.168 4.168 17 N -0.723 5.723 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.114 3.886 27 C -0.102 4.102 28 C -0.141 4.141 29 C -0.110 4.110 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.636 -3.234 -21.306 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.381 5.381 3 C 0.333 3.667 4 O -0.401 6.401 5 C -0.146 4.146 6 C 0.318 3.682 7 O -0.411 6.411 8 N -0.330 5.330 9 C -0.026 4.026 10 C -0.171 4.171 11 C -0.152 4.152 12 C -0.122 4.122 13 H 0.092 0.908 14 C 0.069 3.931 15 H 0.065 0.935 16 C -0.228 4.228 17 N -0.365 5.365 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.008 4.008 27 C -0.140 4.140 28 C -0.178 4.178 29 C -0.147 4.147 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.111 0.889 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.627 -3.112 -21.295 25.472 hybrid contribution 0.700 -0.412 1.005 1.292 sum -12.927 -3.524 -20.290 24.314 Atomic orbital electron populations 1.21584 0.78941 1.02559 1.02512 1.45748 1.08056 1.08759 1.75538 1.19480 0.87713 0.83895 0.75617 1.90715 1.69373 1.31216 1.48817 1.22376 0.93637 1.01559 0.97009 1.19866 0.80450 0.84356 0.83567 1.90707 1.37828 1.26852 1.85728 1.48134 1.53553 1.25562 1.05716 1.22034 0.94263 0.84927 1.01421 1.21916 1.00768 0.97987 0.96414 1.21593 1.00068 0.97089 0.96451 1.21752 0.98474 0.95682 0.96280 0.90832 1.20117 0.92114 0.92956 0.87904 0.93459 1.22567 0.99404 1.00215 1.00635 1.42473 1.53130 1.05117 1.35786 1.19298 1.18315 0.91974 1.07044 0.91182 1.24722 1.01030 0.95343 0.99970 1.69667 1.46964 1.01246 1.40379 0.86140 0.80453 0.77987 0.81775 1.20587 1.21935 1.21956 1.21878 0.99870 0.94702 0.84325 1.22822 1.01579 0.97392 0.92174 1.22885 1.03039 0.95613 0.96262 1.22914 1.01341 0.93381 0.97095 0.90427 0.91981 0.91935 0.76059 0.88951 0.91643 0.91477 0.90777 0.91724 0.90385 0.93143 0.94470 0.92911 0.78107 0.93633 0.89077 0.90939 0.87711 0.90738 0.89581 0.90296 0.88916 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.71 59.85 0.64 1.21 16 2 N -0.73 -6.12 5.61 -67.08 -0.38 -6.50 16 3 C 0.55 5.80 5.23 -10.99 -0.06 5.74 16 4 O -0.53 -6.73 15.10 5.56 0.08 -6.65 16 5 C -0.14 -1.46 0.56 -156.00 -0.09 -1.54 16 6 C 0.53 6.90 6.54 -10.99 -0.07 6.82 16 7 O -0.53 -8.37 15.50 5.56 0.09 -8.28 16 8 N -0.60 -7.67 2.97 -172.77 -0.51 -8.18 16 9 C 0.10 1.12 5.57 -3.71 -0.02 1.10 16 10 C -0.13 -1.64 6.08 -26.62 -0.16 -1.80 16 11 C -0.11 -1.72 4.62 -26.69 -0.12 -1.84 16 12 C -0.10 -1.65 2.33 -90.50 -0.21 -1.86 16 13 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.18 3.48 2.72 -67.93 -0.18 3.30 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.17 -2.93 8.79 37.16 0.33 -2.60 16 17 N -0.72 -17.73 5.04 -53.42 -0.27 -18.00 16 18 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 22 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.11 1.62 5.50 -3.71 -0.02 1.59 16 27 C -0.10 -0.91 6.90 -25.91 -0.18 -1.09 16 28 C -0.14 -1.16 7.80 -25.91 -0.20 -1.36 16 29 C -0.11 -1.06 5.80 -25.92 -0.15 -1.21 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.41 2.99 8.75 -40.82 -0.36 2.63 16 34 H 0.09 1.04 3.20 -51.93 -0.17 0.88 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.94 6.50 -51.93 -0.34 0.60 16 39 H 0.08 1.37 6.47 -51.93 -0.34 1.04 16 40 H 0.05 0.87 6.46 -51.93 -0.34 0.54 16 41 H 0.04 0.54 6.32 -51.93 -0.33 0.21 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.38 9.90 6.05 -40.82 -0.25 9.66 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 46 H 0.07 0.96 6.18 -51.93 -0.32 0.64 16 47 H 0.10 1.02 7.65 -51.93 -0.40 0.62 16 48 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.09 0.93 6.45 -51.93 -0.34 0.60 16 52 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -32.56 395.60 -8.63 -41.19 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.56 Total: 11.03 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.75 Total: -0.71 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.43 Total: -59.98 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.17 Total: -14.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.56 -8.63 -41.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.461 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds