Wall clock time and date at job start Tue Mar 31 2020 20:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 120.00347 * 2 1 4 4 O 1.21284 * 120.00050 * 354.97515 * 3 2 1 5 5 C 1.50698 * 120.00365 * 174.97208 * 3 2 1 6 6 C 1.50707 * 112.84677 * 55.13711 * 5 3 2 7 7 O 1.21286 * 119.99934 * 245.80104 * 6 5 3 8 8 N 1.34780 * 120.00057 * 65.79462 * 6 5 3 9 9 C 1.46922 * 120.62914 * 355.17908 * 8 6 5 10 10 C 1.53627 * 108.54360 * 126.36662 * 9 8 6 11 11 C 1.53043 * 109.23886 * 54.85489 * 10 9 8 12 12 C 1.53033 * 109.54088 * 298.51375 * 11 10 9 13 13 H 1.09003 * 109.52570 * 301.39852 * 12 11 10 14 14 C 1.52998 * 109.50214 * 181.31711 * 12 11 10 15 15 H 1.09004 * 109.46802 * 300.16354 * 14 12 11 16 16 C 1.52995 * 109.47625 * 180.16142 * 14 12 11 17 17 N 1.46503 * 109.46934 * 60.15715 * 14 12 11 18 18 C 1.36933 * 119.99844 * 205.00056 * 17 14 12 19 19 H 1.08003 * 120.00433 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99925 * 179.97438 * 18 17 14 21 21 N 1.31622 * 119.99751 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00167 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46786 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47439 * 120.00056 * 22 20 18 25 25 H 1.48502 * 109.46980 * 240.00308 * 22 20 18 26 26 C 1.46924 * 120.63138 * 175.46007 * 8 6 5 27 27 C 1.53779 * 113.61632 * 283.94388 * 5 3 2 28 28 C 1.53956 * 87.01783 * 220.04320 * 27 5 3 29 29 C 1.53776 * 87.11158 * 25.36153 * 28 27 5 30 30 H 1.09011 * 109.46513 * 59.99962 * 1 2 3 31 31 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47231 * 300.00366 * 1 2 3 33 33 H 0.96998 * 119.99553 * 179.72072 * 2 1 3 34 34 H 1.09005 * 109.59046 * 246.20212 * 9 8 6 35 35 H 1.09009 * 109.58925 * 6.62623 * 9 8 6 36 36 H 1.09000 * 109.63349 * 294.86460 * 10 9 8 37 37 H 1.08999 * 109.43438 * 174.72277 * 10 9 8 38 38 H 1.08995 * 109.45665 * 178.48830 * 11 10 9 39 39 H 1.09002 * 109.44897 * 58.52807 * 11 10 9 40 40 H 1.08999 * 109.47256 * 59.99439 * 16 14 12 41 41 H 1.08999 * 109.47488 * 180.02562 * 16 14 12 42 42 H 1.09004 * 109.47203 * 299.99966 * 16 14 12 43 43 H 0.96997 * 119.99531 * 25.00698 * 17 14 12 44 44 H 0.96998 * 119.99580 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58496 * 353.37579 * 26 8 6 46 46 H 1.09001 * 109.58478 * 113.79526 * 26 8 6 47 47 H 1.08998 * 113.61208 * 334.56291 * 27 5 3 48 48 H 1.09000 * 113.61478 * 105.46619 * 27 5 3 49 49 H 1.08999 * 113.53647 * 270.80722 * 28 27 5 50 50 H 1.09000 * 113.66649 * 139.93298 * 28 27 5 51 51 H 1.09002 * 113.61581 * 220.09057 * 29 28 27 52 52 H 1.08996 * 113.69369 * 89.19625 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5361 2.2155 -0.0920 5 6 3.6416 1.1696 0.1144 6 6 4.3102 0.3275 -0.9416 7 8 4.9218 -0.6705 -0.6240 8 7 4.2285 0.6835 -2.2390 9 6 3.4049 1.8284 -2.6506 10 6 4.2784 2.7880 -3.4730 11 6 4.9138 2.0211 -4.6350 12 6 5.8081 0.9076 -4.0853 13 1 6.5778 1.3405 -3.4464 14 6 6.4684 0.1625 -5.2470 15 1 5.6983 -0.2693 -5.8863 16 6 7.3592 -0.9532 -4.6969 17 7 7.2827 1.0977 -6.0271 18 6 7.5486 0.8392 -7.3453 19 1 7.1577 -0.0539 -7.8100 20 6 8.3197 1.7257 -8.0846 21 7 8.7957 2.8144 -7.5183 22 14 8.6819 1.3735 -9.8830 23 1 8.0359 0.0957 -10.2769 24 1 8.1472 2.4767 -10.7209 25 1 10.1499 1.2683 -10.0809 26 6 4.9564 -0.0699 -3.2692 27 6 4.1515 0.8914 1.5382 28 6 5.2187 1.9706 1.2804 29 6 4.2465 2.5764 0.2545 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.9500 -0.8401 0.0041 34 1 2.5700 1.4786 -3.2579 35 1 3.0265 2.3428 -1.7672 36 1 5.0621 3.2037 -2.8397 37 1 3.6601 3.5956 -3.8649 38 1 5.5130 2.7045 -5.2366 39 1 4.1296 1.5849 -5.2539 40 1 6.7533 -1.6490 -4.1165 41 1 7.8300 -1.4837 -5.5246 42 1 8.1293 -0.5214 -4.0576 43 1 7.6336 1.8999 -5.6097 44 1 9.3349 3.4336 -8.0348 45 1 5.6020 -0.8085 -2.7941 46 1 4.2454 -0.5714 -3.9258 47 1 3.4384 1.1598 2.3176 48 1 4.5636 -0.1096 1.6666 49 1 6.1344 1.5801 0.8365 50 1 5.4051 2.6156 2.1392 51 1 4.7350 2.9340 -0.6519 52 1 3.5589 3.3068 0.6809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732529724.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:58 Heat of formation + Delta-G solvation = -43.612556 kcal Electronic energy + Delta-G solvation = -31476.214262 eV Core-core repulsion = 27476.390962 eV Total energy + Delta-G solvation = -3999.823300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71171 -39.46329 -38.26860 -37.04080 -35.52648 -34.92879 -32.79800 -32.02754 -30.19531 -28.81842 -27.99156 -26.48367 -25.82738 -24.99824 -24.27675 -22.85411 -21.72398 -21.26733 -20.38194 -19.56839 -18.79883 -18.19686 -17.14069 -16.57297 -16.46341 -16.09995 -15.45130 -15.26803 -14.92859 -14.70286 -14.41649 -14.14938 -13.98046 -13.67632 -13.43902 -13.29497 -13.12660 -12.91143 -12.79922 -12.66317 -12.65473 -12.32586 -12.18942 -12.12471 -11.65518 -11.40858 -11.23227 -11.13006 -10.91281 -10.81298 -10.77186 -10.66758 -10.49404 -10.18983 -10.15240 -10.11185 -9.89170 -9.67961 -9.60811 -9.51355 -8.90093 -8.63414 -6.94555 -5.76209 -3.04213 2.14124 2.31738 2.82459 2.85125 3.42969 3.48976 3.50880 4.10334 4.14776 4.18541 4.39466 4.48657 4.58932 4.85033 4.86850 5.04454 5.05898 5.12527 5.15664 5.19937 5.34041 5.38177 5.41689 5.49638 5.53163 5.56215 5.64147 5.65696 5.69566 5.72416 5.84547 5.90659 5.94879 5.97615 5.99970 6.05602 6.12000 6.20904 6.25990 6.46074 6.51184 6.56620 6.68149 6.81899 6.93136 7.02976 7.12312 7.28635 7.71318 7.77976 7.96860 8.42416 9.53823 10.11614 10.46598 11.46527 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.002759 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.085219 B =10147.133204 C =10254.727183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.731 5.731 3 C 0.537 3.463 4 O -0.528 6.528 5 C -0.137 4.137 6 C 0.540 3.460 7 O -0.532 6.532 8 N -0.597 5.597 9 C 0.093 3.907 10 C -0.133 4.133 11 C -0.110 4.110 12 C -0.102 4.102 13 H 0.070 0.930 14 C 0.181 3.819 15 H 0.047 0.953 16 C -0.168 4.168 17 N -0.721 5.721 18 C -0.234 4.234 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.117 3.883 27 C -0.107 4.107 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.405 0.595 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 -3.927 19.104 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.382 5.382 3 C 0.323 3.677 4 O -0.404 6.404 5 C -0.144 4.144 6 C 0.326 3.674 7 O -0.409 6.409 8 N -0.329 5.329 9 C -0.030 4.030 10 C -0.171 4.171 11 C -0.147 4.147 12 C -0.122 4.122 13 H 0.089 0.911 14 C 0.070 3.930 15 H 0.065 0.935 16 C -0.228 4.228 17 N -0.362 5.362 18 C -0.365 4.365 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.005 4.005 27 C -0.145 4.145 28 C -0.177 4.177 29 C -0.147 4.147 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.097 0.903 51 H 0.101 0.899 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.712 -3.773 19.011 24.950 hybrid contribution 0.518 -0.290 -1.044 1.201 sum -15.194 -4.062 17.967 23.878 Atomic orbital electron populations 1.21585 0.79163 1.02492 1.02471 1.45830 1.08023 1.08865 1.75469 1.19945 0.88431 0.83863 0.75494 1.90719 1.69582 1.31253 1.48889 1.22387 0.92397 1.01128 0.98478 1.19472 0.80574 0.84804 0.82540 1.90703 1.43089 1.26157 1.80979 1.48106 1.47385 1.31332 1.06035 1.22173 0.93260 0.86978 1.00553 1.22017 0.99351 0.97786 0.97941 1.21508 0.98882 0.97802 0.96527 1.21754 0.97122 0.96027 0.97304 0.91133 1.20151 0.92327 0.90119 0.90363 0.93515 1.22513 1.00393 0.99355 1.00517 1.42392 1.60364 1.24715 1.08765 1.19264 1.25857 1.04773 0.86626 0.91230 1.24716 1.00931 0.97228 0.98131 1.69668 1.40041 1.12811 1.35633 0.86157 0.77645 0.77270 0.85372 1.20619 1.21963 1.21967 1.21846 0.95195 0.94448 0.89022 1.22840 0.98252 1.01788 0.91646 1.22887 0.97546 0.97701 0.99573 1.22986 0.98059 0.92814 1.00878 0.91906 0.90484 0.92094 0.76076 0.91453 0.88812 0.91532 0.90808 0.89703 0.92268 0.94327 0.92824 0.93508 0.78287 0.93637 0.88654 0.91451 0.89139 0.88960 0.89418 0.90310 0.89943 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.71 59.85 0.64 1.22 16 2 N -0.73 -6.29 5.65 -67.07 -0.38 -6.67 16 3 C 0.54 5.82 5.44 -10.99 -0.06 5.76 16 4 O -0.53 -6.99 14.95 5.55 0.08 -6.90 16 5 C -0.14 -1.45 0.57 -156.00 -0.09 -1.54 16 6 C 0.54 6.93 6.11 -10.98 -0.07 6.87 16 7 O -0.53 -8.10 15.38 5.55 0.09 -8.01 16 8 N -0.60 -7.64 2.97 -172.49 -0.51 -8.16 16 9 C 0.09 1.11 5.20 -3.49 -0.02 1.09 16 10 C -0.13 -1.68 6.05 -26.38 -0.16 -1.84 16 11 C -0.11 -1.69 5.03 -26.69 -0.13 -1.83 16 12 C -0.10 -1.63 1.97 -90.50 -0.18 -1.81 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.18 3.46 2.47 -67.93 -0.17 3.29 16 15 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 16 C -0.17 -3.04 9.14 37.15 0.34 -2.70 16 17 N -0.72 -17.40 4.41 -53.42 -0.24 -17.63 16 18 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 22 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.12 1.64 5.17 -3.71 -0.02 1.62 16 27 C -0.11 -0.97 7.10 -25.83 -0.18 -1.15 16 28 C -0.14 -1.27 7.81 -25.83 -0.20 -1.47 16 29 C -0.11 -1.09 5.75 -25.92 -0.15 -1.24 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.41 3.12 8.61 -40.82 -0.35 2.77 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.10 3.45 -51.92 -0.18 0.93 16 36 H 0.07 0.85 7.51 -51.93 -0.39 0.46 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.57 7.42 -51.93 -0.39 1.19 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.60 6.56 -51.93 -0.34 0.25 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.38 9.90 7.59 -40.82 -0.31 9.59 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.10 1.43 5.65 -51.93 -0.29 1.14 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 48 H 0.09 0.89 7.34 -51.93 -0.38 0.51 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.88 6.54 -51.93 -0.34 0.54 16 52 H 0.10 1.01 7.52 -51.93 -0.39 0.62 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -31.78 399.46 -8.75 -40.53 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -8.82 Total: 11.36 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.72 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.40 Total: -59.49 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.17 Total: -14.92 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.78 -8.75 -40.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529724.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.078 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds