Wall clock time and date at job start Tue Mar 31 2020 20:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 120.00347 * 2 1 4 4 O 1.21284 * 120.00050 * 354.97515 * 3 2 1 5 5 C 1.50698 * 120.00365 * 174.97208 * 3 2 1 6 6 C 1.50707 * 112.84677 * 55.13711 * 5 3 2 7 7 O 1.21286 * 119.99934 * 245.80104 * 6 5 3 8 8 N 1.34780 * 120.00057 * 65.79462 * 6 5 3 9 9 C 1.46922 * 120.62914 * 355.17908 * 8 6 5 10 10 C 1.53627 * 108.54360 * 126.36662 * 9 8 6 11 11 C 1.53043 * 109.23886 * 54.85489 * 10 9 8 12 12 C 1.53033 * 109.54088 * 298.51375 * 11 10 9 13 13 H 1.09003 * 109.52570 * 301.39852 * 12 11 10 14 14 C 1.52998 * 109.50214 * 181.31711 * 12 11 10 15 15 H 1.09004 * 109.46802 * 300.16354 * 14 12 11 16 16 C 1.52995 * 109.47625 * 180.16142 * 14 12 11 17 17 N 1.46503 * 109.46934 * 60.15715 * 14 12 11 18 18 C 1.36933 * 119.99844 * 205.00056 * 17 14 12 19 19 H 1.08003 * 120.00433 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99925 * 179.97438 * 18 17 14 21 21 N 1.31622 * 119.99751 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00167 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46786 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47439 * 120.00056 * 22 20 18 25 25 H 1.48502 * 109.46980 * 240.00308 * 22 20 18 26 26 C 1.46924 * 120.63138 * 175.46007 * 8 6 5 27 27 C 1.53779 * 113.61632 * 283.94388 * 5 3 2 28 28 C 1.53956 * 87.01783 * 220.04320 * 27 5 3 29 29 C 1.53776 * 87.11158 * 25.36153 * 28 27 5 30 30 H 1.09011 * 109.46513 * 59.99962 * 1 2 3 31 31 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47231 * 300.00366 * 1 2 3 33 33 H 0.96998 * 119.99553 * 179.72072 * 2 1 3 34 34 H 1.09005 * 109.59046 * 246.20212 * 9 8 6 35 35 H 1.09009 * 109.58925 * 6.62623 * 9 8 6 36 36 H 1.09000 * 109.63349 * 294.86460 * 10 9 8 37 37 H 1.08999 * 109.43438 * 174.72277 * 10 9 8 38 38 H 1.08995 * 109.45665 * 178.48830 * 11 10 9 39 39 H 1.09002 * 109.44897 * 58.52807 * 11 10 9 40 40 H 1.08999 * 109.47256 * 59.99439 * 16 14 12 41 41 H 1.08999 * 109.47488 * 180.02562 * 16 14 12 42 42 H 1.09004 * 109.47203 * 299.99966 * 16 14 12 43 43 H 0.96997 * 119.99531 * 25.00698 * 17 14 12 44 44 H 0.96998 * 119.99580 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58496 * 353.37579 * 26 8 6 46 46 H 1.09001 * 109.58478 * 113.79526 * 26 8 6 47 47 H 1.08998 * 113.61208 * 334.56291 * 27 5 3 48 48 H 1.09000 * 113.61478 * 105.46619 * 27 5 3 49 49 H 1.08999 * 113.53647 * 270.80722 * 28 27 5 50 50 H 1.09000 * 113.66649 * 139.93298 * 28 27 5 51 51 H 1.09002 * 113.61581 * 220.09057 * 29 28 27 52 52 H 1.08996 * 113.69369 * 89.19625 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5361 2.2155 -0.0920 5 6 3.6416 1.1696 0.1144 6 6 4.3102 0.3275 -0.9416 7 8 4.9218 -0.6705 -0.6240 8 7 4.2285 0.6835 -2.2390 9 6 3.4049 1.8284 -2.6506 10 6 4.2784 2.7880 -3.4730 11 6 4.9138 2.0211 -4.6350 12 6 5.8081 0.9076 -4.0853 13 1 6.5778 1.3405 -3.4464 14 6 6.4684 0.1625 -5.2470 15 1 5.6983 -0.2693 -5.8863 16 6 7.3592 -0.9532 -4.6969 17 7 7.2827 1.0977 -6.0271 18 6 7.5486 0.8392 -7.3453 19 1 7.1577 -0.0539 -7.8100 20 6 8.3197 1.7257 -8.0846 21 7 8.7957 2.8144 -7.5183 22 14 8.6819 1.3735 -9.8830 23 1 8.0359 0.0957 -10.2769 24 1 8.1472 2.4767 -10.7209 25 1 10.1499 1.2683 -10.0809 26 6 4.9564 -0.0699 -3.2692 27 6 4.1515 0.8914 1.5382 28 6 5.2187 1.9706 1.2804 29 6 4.2465 2.5764 0.2545 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.9500 -0.8401 0.0041 34 1 2.5700 1.4786 -3.2579 35 1 3.0265 2.3428 -1.7672 36 1 5.0621 3.2037 -2.8397 37 1 3.6601 3.5956 -3.8649 38 1 5.5130 2.7045 -5.2366 39 1 4.1296 1.5849 -5.2539 40 1 6.7533 -1.6490 -4.1165 41 1 7.8300 -1.4837 -5.5246 42 1 8.1293 -0.5214 -4.0576 43 1 7.6336 1.8999 -5.6097 44 1 9.3349 3.4336 -8.0348 45 1 5.6020 -0.8085 -2.7941 46 1 4.2454 -0.5714 -3.9258 47 1 3.4384 1.1598 2.3176 48 1 4.5636 -0.1096 1.6666 49 1 6.1344 1.5801 0.8365 50 1 5.4051 2.6156 2.1392 51 1 4.7350 2.9340 -0.6519 52 1 3.5589 3.3068 0.6809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732529724.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:57 Heat of formation + Delta-G solvation = -64.369803 kcal Electronic energy + Delta-G solvation = -31477.114364 eV Core-core repulsion = 27476.390962 eV Total energy + Delta-G solvation = -4000.723402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.61982 -40.48140 -39.36364 -38.00565 -37.01541 -35.68550 -34.54482 -33.30332 -31.80224 -29.83521 -29.38265 -27.35755 -26.60501 -26.17095 -25.80791 -24.35783 -22.77539 -22.03103 -21.62990 -20.96113 -19.64599 -19.27614 -19.02010 -17.57768 -17.32614 -16.97302 -16.80121 -16.24378 -16.12453 -15.86240 -15.55275 -15.30496 -15.26297 -15.11702 -14.94105 -14.40864 -14.13237 -14.02003 -13.96588 -13.69978 -13.62100 -13.48448 -13.21862 -13.02959 -12.97356 -12.85086 -12.55535 -12.48450 -12.40667 -12.11826 -12.05811 -11.94967 -11.89120 -11.64579 -11.48355 -11.42933 -11.29341 -10.98279 -10.89092 -10.74551 -10.22369 -9.74790 -8.97353 -7.91279 -5.18324 1.25003 1.36563 1.47677 1.48143 1.57638 1.81281 2.13889 2.57789 3.21725 3.31472 3.37050 3.42698 3.65984 3.70741 3.74531 3.77250 3.92713 3.97334 4.18240 4.28827 4.32753 4.38557 4.45748 4.47804 4.59875 4.60944 4.62329 4.65695 4.73650 4.77206 4.80399 4.82635 4.90479 4.92384 4.95875 5.00634 5.01369 5.06813 5.10322 5.24140 5.28732 5.34446 5.38873 5.44118 5.45657 5.56142 5.61693 6.23441 6.31019 6.32177 6.92622 7.02197 7.37321 8.13694 8.37058 9.32400 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.002759 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.085219 B =10147.133204 C =10254.727183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.724 5.724 3 C 0.537 3.463 4 O -0.554 6.554 5 C -0.138 4.138 6 C 0.542 3.458 7 O -0.556 6.556 8 N -0.597 5.597 9 C 0.100 3.900 10 C -0.125 4.125 11 C -0.103 4.103 12 C -0.089 4.089 13 H 0.055 0.945 14 C 0.177 3.823 15 H 0.048 0.952 16 C -0.158 4.158 17 N -0.731 5.731 18 C -0.229 4.229 19 H 0.074 0.926 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.297 1.297 26 C 0.125 3.875 27 C -0.099 4.099 28 C -0.137 4.137 29 C -0.109 4.109 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.073 0.927 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.402 -5.003 20.115 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.323 3.677 4 O -0.433 6.433 5 C -0.144 4.144 6 C 0.329 3.671 7 O -0.435 6.435 8 N -0.328 5.328 9 C -0.022 4.022 10 C -0.163 4.163 11 C -0.141 4.141 12 C -0.109 4.109 13 H 0.073 0.927 14 C 0.068 3.932 15 H 0.066 0.934 16 C -0.218 4.218 17 N -0.370 5.370 18 C -0.361 4.361 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.223 1.223 25 H -0.225 1.225 26 C 0.003 3.997 27 C -0.137 4.137 28 C -0.174 4.174 29 C -0.147 4.147 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.127 0.873 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.117 0.883 51 H 0.091 0.909 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.582 -4.910 20.039 27.107 hybrid contribution 1.041 -0.017 -1.304 1.668 sum -16.542 -4.927 18.735 25.474 Atomic orbital electron populations 1.21749 0.77834 1.04349 1.02067 1.45871 1.08951 1.08438 1.74138 1.19926 0.88333 0.84078 0.75393 1.90710 1.69955 1.32186 1.50415 1.22378 0.92381 1.01104 0.98564 1.19801 0.80069 0.84578 0.82676 1.90691 1.44162 1.27310 1.81321 1.48111 1.47258 1.31473 1.05989 1.22172 0.92975 0.86390 1.00696 1.21947 0.99485 0.98048 0.96861 1.21394 0.98369 0.97140 0.97224 1.21553 0.96992 0.96305 0.96054 0.92655 1.20356 0.91967 0.89874 0.91011 0.93396 1.22373 1.00197 0.99207 1.00023 1.42556 1.60916 1.25164 1.08405 1.19611 1.24453 1.04258 0.87820 0.90782 1.25462 1.01830 0.97504 1.02019 1.69819 1.41401 1.13922 1.36921 0.85165 0.76932 0.77412 0.80845 1.19102 1.22259 1.22496 1.21654 0.95219 0.93670 0.89175 1.22863 0.98353 1.01465 0.91048 1.22859 0.96725 0.97906 0.99929 1.22992 0.98280 0.92569 1.00832 0.92715 0.87575 0.92062 0.75457 0.90489 0.88230 0.91862 0.89337 0.93222 0.91873 0.91255 0.94397 0.94484 0.79666 0.94258 0.89327 0.90066 0.87325 0.89537 0.90983 0.88301 0.90860 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.71 127.77 1.37 2.28 16 2 N -0.72 -10.85 5.65 -484.51 -2.74 -13.58 16 3 C 0.54 10.62 5.44 87.66 0.48 11.10 16 4 O -0.55 -13.70 14.95 -3.04 -0.05 -13.74 16 5 C -0.14 -2.70 0.57 -53.15 -0.03 -2.73 16 6 C 0.54 13.17 6.11 87.66 0.54 13.71 16 7 O -0.56 -16.27 15.38 -3.05 -0.05 -16.32 16 8 N -0.60 -14.44 2.97 -818.03 -2.43 -16.87 16 9 C 0.10 2.21 5.20 86.51 0.45 2.66 16 10 C -0.13 -3.06 6.05 30.82 0.19 -2.87 16 11 C -0.10 -3.18 5.03 30.62 0.15 -3.03 16 12 C -0.09 -2.82 1.97 -10.72 -0.02 -2.84 16 13 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 14 C 0.18 6.73 2.47 44.99 0.11 6.84 16 15 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 16 C -0.16 -5.64 9.14 71.98 0.66 -4.98 16 17 N -0.73 -35.87 4.41 -322.94 -1.42 -37.30 16 18 C -0.23 -12.50 9.93 84.04 0.83 -11.67 16 19 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 22 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 C 0.13 3.34 5.17 86.36 0.45 3.79 16 27 C -0.10 -1.61 7.10 31.18 0.22 -1.39 16 28 C -0.14 -2.28 7.81 31.18 0.24 -2.03 16 29 C -0.11 -2.02 5.75 31.12 0.18 -1.84 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.41 5.37 8.61 -92.71 -0.80 4.57 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.10 2.18 3.45 -2.38 -0.01 2.17 16 36 H 0.06 1.60 7.51 -2.39 -0.02 1.58 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.89 7.42 -2.39 -0.02 1.87 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.03 6.56 -2.39 -0.02 2.02 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.37 19.86 7.59 -92.71 -0.70 19.15 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.09 2.53 5.65 -2.39 -0.01 2.52 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.11 1.38 8.09 -2.39 -0.02 1.36 16 48 H 0.09 1.54 7.34 -2.39 -0.02 1.52 16 49 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.49 6.54 -2.39 -0.02 1.48 16 52 H 0.11 1.95 7.52 -2.39 -0.02 1.93 16 Total: -1.00 -68.59 399.46 1.34 -67.26 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.57 Total: 38.08 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.28 Total: 3.10 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -6.31 Total: -126.54 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.09 Total: -30.07 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -68.59 1.34 -67.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529724.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.887 kcal (2) G-P(sol) polarization free energy of solvation -68.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds