Wall clock time and date at job start Tue Mar 31 2020 20:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47473 * 119.99916 * 2 1 3 5 5 N 1.46900 * 109.47611 * 175.15998 * 4 2 1 6 6 C 1.46902 * 110.99914 * 198.91963 * 5 4 2 7 7 C 1.46906 * 110.99731 * 74.96645 * 5 4 2 8 8 C 1.50693 * 109.46665 * 190.00006 * 7 5 4 9 9 O 1.21295 * 120.00344 * 0.02562 * 8 7 5 10 10 N 1.34780 * 120.00190 * 179.97438 * 8 7 5 11 11 C 1.37089 * 120.00431 * 180.02562 * 10 8 7 12 12 H 1.08008 * 120.00079 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00436 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99555 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00222 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47083 * 60.00342 * 15 13 11 17 17 H 1.48504 * 109.47146 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47342 * 299.99694 * 15 13 11 19 19 N 1.46503 * 109.47248 * 239.99912 * 2 1 3 20 20 C 1.34777 * 119.99859 * 83.01223 * 19 2 1 21 21 O 1.21278 * 119.99771 * 359.71915 * 20 19 2 22 22 C 1.50695 * 119.99833 * 180.02562 * 20 19 2 23 23 H 1.09000 * 115.57557 * 34.14768 * 22 20 19 24 24 C 1.52302 * 117.53965 * 179.97438 * 22 20 19 25 25 H 1.09007 * 115.91433 * 0.84522 * 24 22 20 26 26 C 1.52076 * 119.83872 * 216.46004 * 24 22 20 27 27 C 1.52869 * 110.51044 * 310.43976 * 26 24 22 28 28 C 1.53298 * 108.59408 * 305.11223 * 27 26 24 29 29 C 1.52880 * 108.57897 * 74.44288 * 28 27 26 30 30 C 1.51287 * 109.91425 * 305.76427 * 29 28 27 31 31 H 1.08997 * 113.81934 * 232.10851 * 30 29 28 32 32 H 1.09002 * 109.46613 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47179 * 299.99873 * 1 2 3 34 34 H 1.08997 * 109.46895 * 60.00319 * 1 2 3 35 35 H 1.09001 * 109.46933 * 295.16142 * 4 2 1 36 36 H 1.08998 * 109.46881 * 55.15232 * 4 2 1 37 37 H 1.09000 * 109.46997 * 54.11788 * 6 5 4 38 38 H 1.09001 * 109.46917 * 174.11902 * 6 5 4 39 39 H 1.08996 * 109.47219 * 294.11562 * 6 5 4 40 40 H 1.09003 * 109.47129 * 309.99991 * 7 5 4 41 41 H 1.08998 * 109.47217 * 70.00213 * 7 5 4 42 42 H 0.97006 * 119.99524 * 0.02562 * 10 8 7 43 43 H 0.96996 * 120.00159 * 179.97438 * 14 13 11 44 44 H 0.96993 * 119.99929 * 263.00866 * 19 2 1 45 45 H 1.08994 * 109.26904 * 70.71364 * 26 24 22 46 46 H 1.09005 * 109.26292 * 190.17707 * 26 24 22 47 47 H 1.08998 * 109.61715 * 64.85116 * 27 26 24 48 48 H 1.09007 * 109.61391 * 185.37975 * 27 26 24 49 49 H 1.08997 * 109.61660 * 194.17128 * 28 27 26 50 50 H 1.08996 * 109.61743 * 314.53194 * 28 27 26 51 51 H 1.08996 * 109.35393 * 65.69348 * 29 28 27 52 52 H 1.09002 * 109.35304 * 185.40503 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5044 -0.8233 1.1923 6 6 3.9952 -1.8666 2.1025 7 6 4.1341 0.4710 1.4865 8 6 5.6078 0.3933 1.1815 9 8 6.0864 -0.6384 0.7599 10 7 6.3940 1.4707 1.3760 11 6 7.7345 1.4003 1.0980 12 1 8.1609 0.4813 0.7235 13 6 8.5452 2.5108 1.2991 14 7 8.0266 3.6287 1.7553 15 14 10.3719 2.4146 0.9210 16 1 10.5636 2.0858 -0.5144 17 1 11.0084 3.7230 1.2179 18 1 10.9958 1.3588 1.7584 19 7 2.0184 -0.6906 -1.1962 20 6 2.1091 -0.0286 -2.3667 21 8 1.7817 1.1373 -2.4308 22 6 2.6109 -0.7392 -3.5972 23 1 2.3442 -1.7933 -3.6735 24 6 2.6902 0.0621 -4.8899 25 1 2.3870 1.1070 -4.8221 26 6 2.3656 -0.6073 -6.2163 27 6 3.1276 -1.9256 -6.3515 28 6 4.6226 -1.6483 -6.1563 29 6 4.8826 -1.4035 -4.6698 30 6 3.9731 -0.3066 -4.1614 31 1 4.4975 0.4930 -3.6385 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.7493 -0.1597 2.1371 36 1 1.6076 -1.7207 1.2937 37 1 3.4878 -2.8065 1.8851 38 1 5.0691 -1.9931 1.9648 39 1 3.7931 -1.5743 3.1329 40 1 3.6761 1.2460 0.8719 41 1 3.9934 0.7123 2.5401 42 1 6.0112 2.2959 1.7128 43 1 8.5924 4.4039 1.8961 44 1 2.2764 -1.6242 -1.1457 45 1 1.2947 -0.8039 -6.2674 46 1 2.6481 0.0569 -7.0330 47 1 2.7832 -2.6270 -5.5916 48 1 2.9597 -2.3452 -7.3435 49 1 5.2013 -2.5087 -6.4923 50 1 4.9095 -0.7675 -6.7307 51 1 4.6865 -2.3198 -4.1131 52 1 5.9230 -1.1107 -4.5285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733033650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:22 Heat of formation + Delta-G solvation = -61.321279 kcal Electronic energy + Delta-G solvation = -30468.450717 eV Core-core repulsion = 26467.859509 eV Total energy + Delta-G solvation = -4000.591208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44472 -39.00981 -38.28637 -36.78088 -34.64476 -33.73209 -33.13235 -31.21671 -30.99022 -30.84743 -28.03355 -26.93449 -25.62023 -24.67546 -23.01340 -22.61176 -22.05686 -20.57160 -20.03735 -19.09110 -18.41318 -17.82111 -17.46490 -16.21477 -16.09724 -15.41388 -15.27168 -14.88226 -14.68305 -14.39486 -14.14387 -14.09194 -13.88247 -13.78659 -13.65732 -13.48004 -13.31282 -12.88299 -12.46356 -12.36671 -12.24919 -12.13505 -12.02080 -11.80736 -11.76207 -11.46771 -11.40419 -11.22848 -11.20101 -11.00143 -10.96675 -10.61102 -10.42364 -10.34968 -10.19060 -9.93826 -9.77898 -9.44929 -9.44201 -8.83648 -8.43524 -7.96056 -7.84980 -6.38796 -3.79587 2.71128 3.21297 3.26842 3.27283 3.31169 3.86413 3.93094 3.99791 4.24972 4.57645 4.64223 4.68841 4.74960 4.93229 4.96826 5.04300 5.11032 5.15813 5.22312 5.27231 5.31962 5.33670 5.43714 5.47087 5.52610 5.57211 5.60241 5.64750 5.68850 5.75694 5.83764 5.84849 5.91731 5.93463 5.99954 6.01869 6.06557 6.15024 6.16182 6.22951 6.27946 6.30811 6.37130 6.51955 6.70451 7.24472 7.35584 7.57214 7.77035 8.08612 8.49008 8.64731 9.20696 9.57532 10.09387 10.78999 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008289 B = 0.003652 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.227483 B = 7666.085069 C = 9846.076042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.085 0.915 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.023 3.977 7 C 0.044 3.956 8 C 0.446 3.554 9 O -0.578 6.578 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.701 5.701 20 C 0.546 3.454 21 O -0.551 6.551 22 C -0.187 4.187 23 H 0.119 0.881 24 C -0.108 4.108 25 H 0.112 0.888 26 C -0.088 4.088 27 C -0.123 4.123 28 C -0.119 4.119 29 C -0.091 4.091 30 C -0.110 4.110 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.014 0.986 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.391 0.609 43 H 0.272 0.728 44 H 0.403 0.597 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.601 -10.164 -8.941 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.103 0.897 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.125 4.125 7 C -0.087 4.087 8 C 0.232 3.768 9 O -0.462 6.462 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 N -0.351 5.351 20 C 0.333 3.667 21 O -0.429 6.429 22 C -0.208 4.208 23 H 0.137 0.863 24 C -0.127 4.127 25 H 0.130 0.870 26 C -0.125 4.125 27 C -0.160 4.160 28 C -0.157 4.157 29 C -0.129 4.129 30 C -0.129 4.129 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.033 0.967 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.224 0.776 43 H 0.082 0.918 44 H 0.237 0.763 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.277 -9.970 -9.665 19.916 hybrid contribution 0.532 0.405 1.172 1.350 sum -13.746 -9.565 -8.493 18.776 Atomic orbital electron populations 1.22143 0.95299 1.01930 1.02582 1.20922 0.93068 0.97698 0.84180 0.89717 1.22489 0.89208 1.00779 0.96129 1.61554 1.03223 1.05789 1.53225 1.22550 1.04175 0.93474 0.92259 1.21924 0.95562 0.91805 0.99424 1.19680 0.87106 0.85189 0.84873 1.90465 1.75187 1.30345 1.50208 1.41858 1.08369 1.12108 1.57732 1.19626 0.82873 0.99346 1.40976 0.88022 1.25250 1.00559 0.94871 0.97217 1.69604 1.36920 1.02260 1.45519 0.85936 0.82027 0.77263 0.79095 1.19900 1.20986 1.19951 1.45651 1.66161 1.15184 1.08055 1.19617 0.76824 0.86403 0.83881 1.90663 1.49992 1.16710 1.85517 1.22394 1.04507 1.00277 0.93659 0.86346 1.21876 0.99809 1.00180 0.90824 0.87011 1.20879 0.99995 0.96433 0.95226 1.21635 0.95676 0.97271 1.01460 1.21580 0.95973 1.01579 0.96532 1.20838 0.99178 0.97371 0.95496 1.21968 0.88310 1.00887 1.01732 0.87497 0.92562 0.91776 0.91840 0.93405 0.90376 0.92382 0.88439 0.96747 0.89597 0.93536 0.77558 0.91841 0.76269 0.91592 0.91133 0.91882 0.91889 0.91938 0.91628 0.91284 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.46 37.16 0.35 -1.32 16 2 C 0.15 1.86 2.55 -67.93 -0.17 1.69 16 3 H 0.08 1.31 6.41 -51.92 -0.33 0.98 16 4 C 0.04 0.51 4.54 -3.82 -0.02 0.49 16 5 N -0.51 -8.09 4.16 -244.37 -1.02 -9.11 16 6 C 0.02 0.35 9.17 60.07 0.55 0.90 16 7 C 0.04 0.80 5.28 -4.98 -0.03 0.78 16 8 C 0.45 10.56 7.52 -10.99 -0.08 10.48 16 9 O -0.58 -15.25 13.88 5.54 0.08 -15.18 16 10 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 11 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 12 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 14 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 15 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.70 -9.20 4.83 -53.80 -0.26 -9.46 16 20 C 0.55 8.23 7.56 -10.99 -0.08 8.15 16 21 O -0.55 -10.19 15.86 5.56 0.09 -10.11 16 22 C -0.19 -2.34 5.34 -91.79 -0.49 -2.83 16 23 H 0.12 1.23 7.28 -51.93 -0.38 0.85 16 24 C -0.11 -1.29 5.60 -91.92 -0.52 -1.81 16 25 H 0.11 1.53 7.55 -51.93 -0.39 1.14 16 26 C -0.09 -0.81 5.93 -27.27 -0.16 -0.97 16 27 C -0.12 -1.03 5.70 -26.64 -0.15 -1.18 16 28 C -0.12 -1.10 5.92 -26.64 -0.16 -1.26 16 29 C -0.09 -1.04 5.82 -27.66 -0.16 -1.20 16 30 C -0.11 -1.44 5.75 -91.62 -0.53 -1.97 16 31 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.05 0.53 8.01 -51.93 -0.42 0.12 16 36 H 0.08 0.78 7.81 -51.93 -0.41 0.38 16 37 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 38 H 0.10 1.85 5.92 -51.93 -0.31 1.54 16 39 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 40 H 0.09 1.54 6.66 -51.93 -0.35 1.19 16 41 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 42 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.40 4.72 8.58 -40.82 -0.35 4.37 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.53 7.12 -51.93 -0.37 0.16 16 48 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 51 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 52 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -32.30 411.52 -10.18 -42.48 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -9.03 Total: 15.76 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.89 Total: 1.94 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.61 Total: -57.33 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.17 Total: -25.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.30 -10.18 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733033650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.839 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds