Wall clock time and date at job start Tue Mar 31 2020 20:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47473 * 119.99916 * 2 1 3 5 5 N 1.46900 * 109.47611 * 175.15998 * 4 2 1 6 6 C 1.46902 * 110.99914 * 198.91963 * 5 4 2 7 7 C 1.46906 * 110.99731 * 74.96645 * 5 4 2 8 8 C 1.50693 * 109.46665 * 190.00006 * 7 5 4 9 9 O 1.21295 * 120.00344 * 0.02562 * 8 7 5 10 10 N 1.34780 * 120.00190 * 179.97438 * 8 7 5 11 11 C 1.37089 * 120.00431 * 180.02562 * 10 8 7 12 12 H 1.08008 * 120.00079 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00436 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99555 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00222 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47083 * 60.00342 * 15 13 11 17 17 H 1.48504 * 109.47146 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47342 * 299.99694 * 15 13 11 19 19 N 1.46503 * 109.47248 * 239.99912 * 2 1 3 20 20 C 1.34777 * 119.99859 * 83.01223 * 19 2 1 21 21 O 1.21278 * 119.99771 * 359.71915 * 20 19 2 22 22 C 1.50695 * 119.99833 * 180.02562 * 20 19 2 23 23 H 1.09000 * 115.57557 * 34.14768 * 22 20 19 24 24 C 1.52302 * 117.53965 * 179.97438 * 22 20 19 25 25 H 1.09007 * 115.91433 * 0.84522 * 24 22 20 26 26 C 1.52076 * 119.83872 * 216.46004 * 24 22 20 27 27 C 1.52869 * 110.51044 * 310.43976 * 26 24 22 28 28 C 1.53298 * 108.59408 * 305.11223 * 27 26 24 29 29 C 1.52880 * 108.57897 * 74.44288 * 28 27 26 30 30 C 1.51287 * 109.91425 * 305.76427 * 29 28 27 31 31 H 1.08997 * 113.81934 * 232.10851 * 30 29 28 32 32 H 1.09002 * 109.46613 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47179 * 299.99873 * 1 2 3 34 34 H 1.08997 * 109.46895 * 60.00319 * 1 2 3 35 35 H 1.09001 * 109.46933 * 295.16142 * 4 2 1 36 36 H 1.08998 * 109.46881 * 55.15232 * 4 2 1 37 37 H 1.09000 * 109.46997 * 54.11788 * 6 5 4 38 38 H 1.09001 * 109.46917 * 174.11902 * 6 5 4 39 39 H 1.08996 * 109.47219 * 294.11562 * 6 5 4 40 40 H 1.09003 * 109.47129 * 309.99991 * 7 5 4 41 41 H 1.08998 * 109.47217 * 70.00213 * 7 5 4 42 42 H 0.97006 * 119.99524 * 0.02562 * 10 8 7 43 43 H 0.96996 * 120.00159 * 179.97438 * 14 13 11 44 44 H 0.96993 * 119.99929 * 263.00866 * 19 2 1 45 45 H 1.08994 * 109.26904 * 70.71364 * 26 24 22 46 46 H 1.09005 * 109.26292 * 190.17707 * 26 24 22 47 47 H 1.08998 * 109.61715 * 64.85116 * 27 26 24 48 48 H 1.09007 * 109.61391 * 185.37975 * 27 26 24 49 49 H 1.08997 * 109.61660 * 194.17128 * 28 27 26 50 50 H 1.08996 * 109.61743 * 314.53194 * 28 27 26 51 51 H 1.08996 * 109.35393 * 65.69348 * 29 28 27 52 52 H 1.09002 * 109.35304 * 185.40503 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5044 -0.8233 1.1923 6 6 3.9952 -1.8666 2.1025 7 6 4.1341 0.4710 1.4865 8 6 5.6078 0.3933 1.1815 9 8 6.0864 -0.6384 0.7599 10 7 6.3940 1.4707 1.3760 11 6 7.7345 1.4003 1.0980 12 1 8.1609 0.4813 0.7235 13 6 8.5452 2.5108 1.2991 14 7 8.0266 3.6287 1.7553 15 14 10.3719 2.4146 0.9210 16 1 10.5636 2.0858 -0.5144 17 1 11.0084 3.7230 1.2179 18 1 10.9958 1.3588 1.7584 19 7 2.0184 -0.6906 -1.1962 20 6 2.1091 -0.0286 -2.3667 21 8 1.7817 1.1373 -2.4308 22 6 2.6109 -0.7392 -3.5972 23 1 2.3442 -1.7933 -3.6735 24 6 2.6902 0.0621 -4.8899 25 1 2.3870 1.1070 -4.8221 26 6 2.3656 -0.6073 -6.2163 27 6 3.1276 -1.9256 -6.3515 28 6 4.6226 -1.6483 -6.1563 29 6 4.8826 -1.4035 -4.6698 30 6 3.9731 -0.3066 -4.1614 31 1 4.4975 0.4930 -3.6385 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.7493 -0.1597 2.1371 36 1 1.6076 -1.7207 1.2937 37 1 3.4878 -2.8065 1.8851 38 1 5.0691 -1.9931 1.9648 39 1 3.7931 -1.5743 3.1329 40 1 3.6761 1.2460 0.8719 41 1 3.9934 0.7123 2.5401 42 1 6.0112 2.2959 1.7128 43 1 8.5924 4.4039 1.8961 44 1 2.2764 -1.6242 -1.1457 45 1 1.2947 -0.8039 -6.2674 46 1 2.6481 0.0569 -7.0330 47 1 2.7832 -2.6270 -5.5916 48 1 2.9597 -2.3452 -7.3435 49 1 5.2013 -2.5087 -6.4923 50 1 4.9095 -0.7675 -6.7307 51 1 4.6865 -2.3198 -4.1131 52 1 5.9230 -1.1107 -4.5285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733033650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:22 Heat of formation + Delta-G solvation = -83.425526 kcal Electronic energy + Delta-G solvation = -30469.409229 eV Core-core repulsion = 26467.859509 eV Total energy + Delta-G solvation = -4001.549720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51523 -40.46457 -39.64268 -38.16879 -36.12712 -35.52819 -34.02733 -33.28813 -32.01000 -31.72369 -29.60951 -27.97787 -26.65266 -26.53152 -24.07328 -23.45350 -23.23566 -21.74359 -21.15598 -20.86499 -19.86164 -19.31687 -18.55296 -17.87030 -17.28833 -16.66430 -16.61104 -16.41275 -16.01284 -15.88032 -15.43039 -15.28582 -15.08541 -14.95558 -14.87973 -14.70114 -14.45485 -14.16031 -13.72181 -13.45403 -13.40264 -13.27342 -13.13920 -13.09212 -12.92036 -12.85456 -12.69203 -12.64444 -12.48572 -12.39396 -12.14587 -12.04855 -11.75494 -11.72451 -11.44752 -11.19369 -10.99462 -10.73219 -10.54072 -10.27811 -10.01737 -9.95510 -9.21113 -8.47376 -5.96292 1.37789 1.39057 1.50380 1.53751 2.04210 2.20882 2.27779 2.77220 2.84141 3.19200 3.35674 3.64111 3.73217 3.74708 3.80625 4.03907 4.05118 4.14893 4.18015 4.20002 4.31716 4.34937 4.39194 4.42688 4.49051 4.55883 4.60295 4.65138 4.69308 4.70405 4.77177 4.81753 4.85673 4.95637 5.06493 5.07940 5.10580 5.22906 5.25930 5.28297 5.32888 5.34162 5.38997 5.44374 5.52774 5.61252 5.86413 6.05451 6.20725 6.58903 6.67019 7.11585 7.35265 7.54889 8.10374 8.70195 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008289 B = 0.003652 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.227483 B = 7666.085069 C = 9846.076042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.050 0.950 4 C 0.050 3.950 5 N -0.529 5.529 6 C 0.028 3.972 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.607 6.607 10 N -0.578 5.578 11 C -0.331 4.331 12 H 0.081 0.919 13 C -0.015 4.015 14 N -0.924 5.924 15 Si 0.993 3.007 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.268 1.268 19 N -0.692 5.692 20 C 0.535 3.465 21 O -0.594 6.594 22 C -0.182 4.182 23 H 0.148 0.852 24 C -0.099 4.099 25 H 0.086 0.914 26 C -0.084 4.084 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.089 4.089 30 C -0.122 4.122 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.393 0.607 43 H 0.277 0.723 44 H 0.412 0.588 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.075 0.925 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 -12.185 -9.197 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.069 0.931 4 C -0.078 4.078 5 N -0.253 5.253 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.231 3.769 9 O -0.493 6.493 10 N -0.215 5.215 11 C -0.461 4.461 12 H 0.099 0.901 13 C -0.214 4.214 14 N -0.565 5.565 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.193 1.193 19 N -0.341 5.341 20 C 0.323 3.677 21 O -0.476 6.476 22 C -0.203 4.203 23 H 0.166 0.834 24 C -0.118 4.118 25 H 0.104 0.896 26 C -0.121 4.121 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.126 4.126 30 C -0.142 4.142 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.226 0.774 43 H 0.086 0.914 44 H 0.248 0.752 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.093 0.907 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.722 -12.018 -9.896 22.126 hybrid contribution 0.930 1.034 1.298 1.903 sum -14.792 -10.984 -8.598 20.332 Atomic orbital electron populations 1.22040 0.93057 1.03352 1.02406 1.21000 0.94747 0.96026 0.84405 0.93130 1.22559 0.86365 1.02816 0.96055 1.61475 1.05566 1.04422 1.53864 1.22443 1.01830 0.94740 0.92906 1.21719 0.91491 0.93613 1.00496 1.20684 0.89246 0.83995 0.82998 1.90443 1.76514 1.31299 1.50998 1.41963 1.08101 1.12803 1.58636 1.19625 0.84415 0.99249 1.42800 0.90144 1.26062 1.04698 0.94174 0.96481 1.69679 1.38449 1.02684 1.45648 0.84994 0.76744 0.77851 0.78798 1.19809 1.19546 1.19345 1.45667 1.65236 1.15494 1.07743 1.20119 0.76389 0.86078 0.85110 1.90637 1.52044 1.18605 1.86274 1.22483 1.03455 1.01488 0.92838 0.83440 1.21900 0.98281 0.99271 0.92323 0.89559 1.20918 1.01025 0.96940 0.93236 1.21632 0.94346 0.96661 1.02898 1.21571 0.97264 1.02061 0.94422 1.20824 0.97686 0.96641 0.97465 1.21876 0.88927 1.00699 1.02655 0.91688 0.90241 0.90068 0.93939 0.91625 0.87115 0.89164 0.92761 0.95430 0.89554 0.91523 0.77430 0.91373 0.75192 0.90208 0.90448 0.91353 0.89713 0.90434 0.92012 0.90656 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.46 71.98 0.68 -2.13 16 2 C 0.14 3.47 2.55 44.99 0.11 3.59 16 3 H 0.05 1.59 6.41 -2.38 -0.02 1.58 16 4 C 0.05 1.04 4.54 86.30 0.39 1.43 16 5 N -0.53 -15.91 4.16 -927.04 -3.86 -19.77 16 6 C 0.03 0.82 9.17 127.69 1.17 1.99 16 7 C 0.06 2.11 5.28 85.55 0.45 2.57 16 8 C 0.44 21.68 7.52 87.65 0.66 22.34 16 9 O -0.61 -33.23 13.88 -3.08 -0.04 -33.27 16 10 N -0.58 -30.88 5.29 -306.98 -1.62 -32.51 16 11 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 12 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 13 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 14 N -0.92 -51.65 13.05 21.66 0.28 -51.37 16 15 Si 0.99 43.98 29.55 68.60 2.03 46.01 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 N -0.69 -17.71 4.83 -442.53 -2.14 -19.84 16 20 C 0.54 16.53 7.56 87.66 0.66 17.19 16 21 O -0.59 -23.19 15.86 -3.02 -0.05 -23.24 16 22 C -0.18 -4.53 5.34 -11.55 -0.06 -4.59 16 23 H 0.15 2.76 7.28 -2.39 -0.02 2.74 16 24 C -0.10 -2.41 5.60 -11.64 -0.07 -2.47 16 25 H 0.09 2.54 7.55 -2.38 -0.02 2.52 16 26 C -0.08 -1.40 5.93 30.25 0.18 -1.22 16 27 C -0.12 -1.65 5.70 30.65 0.17 -1.48 16 28 C -0.12 -1.97 5.92 30.65 0.18 -1.79 16 29 C -0.09 -2.03 5.82 29.99 0.17 -1.86 16 30 C -0.12 -3.38 5.75 -11.44 -0.07 -3.45 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 0.99 8.11 -2.39 -0.02 0.97 16 35 H 0.07 1.21 8.01 -2.39 -0.02 1.19 16 36 H 0.11 1.68 7.81 -2.39 -0.02 1.66 16 37 H 0.09 1.98 7.94 -2.39 -0.02 1.97 16 38 H 0.05 2.06 5.92 -2.39 -0.01 2.05 16 39 H 0.03 0.71 8.13 -2.39 -0.02 0.69 16 40 H 0.09 3.16 6.66 -2.39 -0.02 3.14 16 41 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 42 H 0.39 20.35 7.90 -92.70 -0.73 19.62 16 43 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.41 8.94 8.58 -92.71 -0.80 8.15 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.07 0.91 7.12 -2.39 -0.02 0.90 16 48 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.10 8.05 -2.39 -0.02 1.08 16 51 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 52 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.42 411.52 -0.07 -74.49 By element: Atomic # 1 Polarization: 48.82 SS G_CDS: -0.60 Total: 48.22 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.93 Total: 11.28 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -7.33 Total: -123.49 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.09 Total: -56.51 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.42 -0.07 -74.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733033650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.936 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds