Wall clock time and date at job start Tue Mar 31 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47227 * 119.99913 * 2 1 3 5 5 C 1.50698 * 109.47004 * 294.99831 * 4 2 1 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 4 9 9 C 1.52995 * 110.28954 * 59.57840 * 8 7 5 10 10 C 1.54260 * 110.32700 * 297.44760 * 8 7 5 11 11 C 1.54608 * 104.95521 * 241.13073 * 10 8 7 12 12 N 1.48564 * 104.63066 * 23.77995 * 11 10 8 13 13 C 1.46903 * 110.99747 * 200.99805 * 12 11 10 14 14 C 1.50696 * 109.46912 * 285.41568 * 13 12 11 15 15 O 1.21296 * 120.00572 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99836 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00090 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99784 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99946 * 179.97438 * 17 16 14 20 20 N 1.31403 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99648 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47330 * 90.00486 * 21 19 17 23 23 H 1.48508 * 109.46964 * 210.00024 * 21 19 17 24 24 H 1.48496 * 109.47638 * 330.00139 * 21 19 17 25 25 C 1.48564 * 104.22437 * 320.55149 * 12 11 10 26 26 C 1.53000 * 109.47228 * 240.00272 * 2 1 3 27 27 C 1.53002 * 117.50219 * 128.74211 * 26 2 1 28 28 C 1.53007 * 117.49868 * 60.08261 * 26 2 1 29 29 H 1.09001 * 109.46864 * 300.00168 * 1 2 3 30 30 H 1.09001 * 109.47487 * 59.99951 * 1 2 3 31 31 H 1.08993 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46690 * 175.00180 * 4 2 1 33 33 H 1.08993 * 109.46773 * 55.00517 * 4 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47102 * 60.69986 * 9 8 7 36 36 H 1.08999 * 109.47203 * 180.70203 * 9 8 7 37 37 H 1.09002 * 109.47198 * 300.70009 * 9 8 7 38 38 H 1.09007 * 110.32404 * 0.02562 * 10 8 7 39 39 H 1.09002 * 110.32669 * 122.20700 * 10 8 7 40 40 H 1.08996 * 110.35912 * 265.00494 * 11 10 8 41 41 H 1.09004 * 110.52397 * 142.63504 * 11 10 8 42 42 H 1.09000 * 109.47441 * 45.41532 * 13 12 11 43 43 H 1.09005 * 109.46832 * 165.41751 * 13 12 11 44 44 H 0.96998 * 120.00157 * 0.02562 * 16 14 13 45 45 H 0.97001 * 120.00276 * 179.97438 * 20 19 17 46 46 H 1.08999 * 110.40836 * 280.71236 * 25 12 11 47 47 H 1.08998 * 110.51330 * 158.31302 * 25 12 11 48 48 H 1.09002 * 115.54848 * 274.41510 * 26 2 1 49 49 H 1.09001 * 117.49826 * 0.02562 * 27 26 2 50 50 H 1.09002 * 117.49525 * 145.02045 * 27 26 2 51 51 H 1.09002 * 117.49481 * 214.98006 * 28 26 2 52 52 H 1.08993 * 117.49744 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3919 3.7001 8 6 1.6022 0.3679 4.8929 9 6 0.0803 0.5053 4.9692 10 6 2.2658 1.7604 4.8768 11 6 3.1546 1.7934 6.1414 12 7 3.4297 0.3652 6.4442 13 6 3.8244 0.1914 7.8485 14 6 5.2362 0.6831 8.0379 15 8 5.8529 1.1344 7.0960 16 7 5.8135 0.6223 9.2544 17 6 7.0981 1.0691 9.4267 18 1 7.6474 1.4702 8.5878 19 6 7.6929 1.0069 10.6809 20 7 7.0244 0.5194 11.7017 21 14 9.4430 1.6164 10.9157 22 1 9.4216 3.0580 11.2717 23 1 10.0930 0.8468 12.0069 24 1 10.2058 1.4291 9.6555 25 6 2.1426 -0.3218 6.1640 26 6 2.0400 -0.7212 -1.2493 27 6 3.0762 0.0040 -2.1102 28 6 1.6373 -0.1482 -2.6097 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7994 1.2055 33 1 1.6054 -1.7197 1.2951 34 1 2.4884 -1.2158 3.7907 35 1 -0.3712 -0.4848 5.0305 36 1 -0.1885 1.0827 5.8537 37 1 -0.2835 1.0160 4.0776 38 1 2.8757 1.8788 3.9811 39 1 1.5074 2.5418 4.9250 40 1 2.6203 2.2612 6.9683 41 1 4.0846 2.3256 5.9411 42 1 3.1518 0.7625 8.4884 43 1 3.7687 -0.8645 8.1135 44 1 5.3203 0.2617 10.0078 45 1 7.4398 0.4756 12.5772 46 1 1.4500 -0.1849 6.9945 47 1 2.3085 -1.3832 5.9793 48 1 2.1253 -1.8046 -1.1647 49 1 3.3950 0.9948 -1.7863 50 1 3.8431 -0.6023 -2.5923 51 1 1.4582 -0.8547 -3.4202 52 1 1.0087 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733415550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:26 Heat of formation + Delta-G solvation = -50.350397 kcal Electronic energy + Delta-G solvation = -29547.326146 eV Core-core repulsion = 25547.210671 eV Total energy + Delta-G solvation = -4000.115475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.57520 -39.06612 -38.13105 -37.42697 -34.62760 -33.78266 -33.37329 -31.65556 -31.15106 -29.58064 -27.80852 -27.60907 -25.34989 -24.18177 -23.71547 -22.54268 -21.47515 -20.97063 -19.92001 -19.56475 -19.04020 -17.84554 -17.13266 -16.54949 -16.05963 -15.78226 -15.45407 -15.25121 -14.88187 -14.59489 -14.42251 -14.06213 -13.85589 -13.72087 -13.52992 -13.29380 -13.17828 -12.98457 -12.62091 -12.42901 -12.13486 -12.06325 -11.91885 -11.85656 -11.58701 -11.51455 -11.44567 -11.34572 -11.10503 -11.03416 -10.91111 -10.90230 -10.62598 -10.55647 -10.38767 -10.21069 -10.17884 -9.56729 -9.48605 -9.06233 -8.52215 -8.02894 -7.94070 -6.40842 -3.81478 2.61926 3.08841 3.18173 3.26693 3.32675 3.52177 3.91602 4.00893 4.25904 4.31063 4.40779 4.50824 4.63766 4.71511 4.79075 4.92470 4.99322 5.04779 5.12390 5.17371 5.25626 5.31848 5.35792 5.36516 5.40882 5.42053 5.52470 5.58631 5.60730 5.62981 5.67726 5.71461 5.76018 5.80229 5.81896 5.84483 5.94798 6.00527 6.13800 6.16334 6.23421 6.25241 6.29638 6.42724 6.59375 7.07796 7.17037 7.51317 7.55975 8.07283 8.23149 8.63211 9.19466 9.55786 10.08047 10.77021 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.002021 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.463032 B =13848.827024 C =14878.824726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 H 0.078 0.922 4 C -0.136 4.136 5 C 0.515 3.485 6 O -0.536 6.536 7 N -0.714 5.714 8 C 0.174 3.826 9 C -0.157 4.157 10 C -0.117 4.117 11 C 0.036 3.964 12 N -0.482 5.482 13 C 0.034 3.966 14 C 0.446 3.554 15 O -0.576 6.576 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.028 3.972 26 C -0.149 4.149 27 C -0.182 4.182 28 C -0.179 4.179 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.401 0.599 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 -5.279 -19.295 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 H 0.097 0.903 4 C -0.176 4.176 5 C 0.302 3.698 6 O -0.414 6.414 7 N -0.366 5.366 8 C 0.087 3.913 9 C -0.215 4.215 10 C -0.156 4.156 11 C -0.092 4.092 12 N -0.206 5.206 13 C -0.098 4.098 14 C 0.231 3.769 15 O -0.459 6.459 16 N -0.203 5.203 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.101 4.101 26 C -0.168 4.168 27 C -0.218 4.218 28 C -0.216 4.216 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.102 0.898 48 H 0.121 0.879 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.073 -4.475 -20.111 25.528 hybrid contribution 0.301 -0.204 1.404 1.450 sum -14.772 -4.680 -18.707 24.291 Atomic orbital electron populations 1.21914 0.94471 1.01334 1.02887 1.20437 0.96286 0.98991 0.90457 0.90334 1.21726 1.03188 1.00061 0.92631 1.20598 0.78977 0.85710 0.84485 1.90629 1.39775 1.24424 1.86545 1.46164 1.57592 1.27562 1.05263 1.20975 0.94240 0.91868 0.84179 1.22196 0.93828 1.02035 1.03481 1.22703 0.98498 0.95559 0.98864 1.23240 1.00136 0.89957 0.95829 1.65145 1.25798 1.09122 1.20485 1.22068 0.96811 1.01869 0.89061 1.19688 0.87900 0.85275 0.84045 1.90516 1.64894 1.50082 1.40452 1.41861 1.14330 1.55722 1.08435 1.19687 0.89419 1.37737 0.95847 0.87966 1.25248 1.00177 0.97515 0.95066 1.69607 1.38028 1.45954 1.00850 0.85866 0.81843 0.78535 0.78093 1.20457 1.20948 1.19430 1.23434 0.91582 0.99397 0.95700 1.22367 1.03676 0.99080 0.91637 1.23053 0.92417 1.02221 1.04158 1.22929 0.98210 1.03332 0.97121 0.90567 0.93049 0.93456 0.88730 0.89083 0.76374 0.92733 0.91876 0.90102 0.90646 0.90839 0.94289 0.88553 0.93068 0.89364 0.77554 0.91924 0.92516 0.89753 0.87891 0.88704 0.88948 0.89026 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.78 37.16 0.33 -0.98 16 2 C -0.04 -0.37 2.19 -90.62 -0.20 -0.56 16 3 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16 4 C -0.14 -1.09 5.16 -27.88 -0.14 -1.23 16 5 C 0.52 5.55 6.72 -10.99 -0.07 5.48 16 6 O -0.54 -7.23 11.25 5.55 0.06 -7.17 16 7 N -0.71 -7.36 5.09 -46.33 -0.24 -7.59 16 8 C 0.17 2.01 1.01 -130.44 -0.13 1.88 16 9 C -0.16 -1.64 8.16 37.16 0.30 -1.34 16 10 C -0.12 -1.61 5.54 -25.23 -0.14 -1.75 16 11 C 0.04 0.58 5.93 -2.06 -0.01 0.57 16 12 N -0.48 -7.79 4.98 -231.25 -1.15 -8.94 16 13 C 0.03 0.59 5.32 -4.98 -0.03 0.56 16 14 C 0.45 10.49 7.63 -10.99 -0.08 10.40 16 15 O -0.58 -15.60 14.80 5.54 0.08 -15.51 16 16 N -0.57 -14.32 5.29 -10.96 -0.06 -14.37 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.03 0.33 5.65 -2.18 -0.01 0.32 16 26 C -0.15 -1.09 5.15 -90.61 -0.47 -1.56 16 27 C -0.18 -1.32 10.18 -26.69 -0.27 -1.60 16 28 C -0.18 -1.24 9.74 -26.69 -0.26 -1.50 16 29 H 0.08 0.82 5.95 -51.93 -0.31 0.51 16 30 H 0.05 0.43 7.29 -51.93 -0.38 0.05 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.40 3.46 8.27 -40.82 -0.34 3.12 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.97 6.18 -51.93 -0.32 0.65 16 38 H 0.07 1.15 7.39 -51.93 -0.38 0.77 16 39 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 40 H 0.04 0.60 7.75 -51.93 -0.40 0.19 16 41 H 0.10 1.85 7.23 -51.93 -0.38 1.48 16 42 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 43 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 47 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 48 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 49 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.09 0.67 7.61 -51.93 -0.40 0.27 16 LS Contribution 408.60 15.07 6.16 6.16 Total: -1.00 -32.09 408.60 -9.84 -41.93 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.96 Total: 12.51 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.43 Total: 0.72 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.72 Total: -54.72 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.14 Total: -22.68 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.09 -9.84 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733415550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.423 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds