Wall clock time and date at job start Tue Mar 31 2020 20:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 C 1.50699 * 109.47227 * 120.00136 * 2 1 3 5 5 O 1.21279 * 120.00313 * 119.99974 * 4 2 1 6 6 N 1.34779 * 119.99993 * 300.00114 * 4 2 1 7 7 C 1.46497 * 120.00314 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47160 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.46194 * 60.03474 * 8 7 6 10 10 C 1.53039 * 109.46238 * 300.07002 * 8 7 6 11 11 C 1.53194 * 109.31032 * 178.61346 * 10 8 7 12 12 N 1.46929 * 108.77794 * 54.63966 * 11 10 8 13 13 C 1.36928 * 120.63210 * 126.40976 * 12 11 10 14 14 H 1.08003 * 119.99818 * 207.66381 * 13 12 11 15 15 C 1.38817 * 120.00434 * 27.66514 * 13 12 11 16 16 N 1.31616 * 119.99440 * 17.36354 * 15 13 12 17 17 Si 1.86792 * 120.00272 * 197.37033 * 15 13 12 18 18 H 1.48494 * 109.47521 * 89.99604 * 17 15 13 19 19 H 1.48504 * 109.47119 * 209.99990 * 17 15 13 20 20 H 1.48504 * 109.46974 * 329.99413 * 17 15 13 21 21 C 1.46930 * 118.73622 * 306.38878 * 12 11 10 22 22 C 1.53050 * 109.45769 * 180.02562 * 8 7 6 23 23 C 1.52996 * 109.47081 * 239.99829 * 2 1 3 24 24 H 1.09001 * 110.21575 * 185.69492 * 23 2 1 25 25 C 1.54486 * 110.24660 * 63.77360 * 23 2 1 26 26 C 1.54628 * 101.76555 * 215.58328 * 25 23 2 27 27 C 1.51281 * 104.19809 * 24.79526 * 26 25 23 28 28 O 1.21272 * 124.94685 * 163.77394 * 27 26 25 29 29 N 1.34571 * 110.13565 * 343.67569 * 27 26 25 30 30 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47035 * 299.99866 * 1 2 3 32 32 H 1.08993 * 109.47143 * 60.00453 * 1 2 3 33 33 H 0.96999 * 119.99873 * 0.27818 * 6 4 2 34 34 H 1.08999 * 109.47446 * 300.00411 * 7 6 4 35 35 H 1.08998 * 109.46686 * 60.00302 * 7 6 4 36 36 H 1.09001 * 109.47261 * 59.99222 * 9 8 7 37 37 H 1.08993 * 109.47628 * 179.97438 * 9 8 7 38 38 H 1.09005 * 109.46894 * 299.99985 * 9 8 7 39 39 H 1.08989 * 109.49978 * 298.56561 * 10 8 7 40 40 H 1.08995 * 109.49870 * 58.66805 * 10 8 7 41 41 H 1.08999 * 109.59187 * 294.84990 * 11 10 8 42 42 H 1.09001 * 109.58590 * 174.42607 * 11 10 8 43 43 H 0.97003 * 119.99733 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.58535 * 293.82142 * 21 12 11 45 45 H 1.08995 * 109.70028 * 173.46456 * 21 12 11 46 46 H 1.09001 * 109.49651 * 301.33758 * 22 8 7 47 47 H 1.08995 * 109.49471 * 61.40947 * 22 8 7 48 48 H 1.09008 * 110.96564 * 333.69705 * 25 23 2 49 49 H 1.08999 * 110.96904 * 97.45919 * 25 23 2 50 50 H 1.08997 * 110.48610 * 143.47265 * 26 25 23 51 51 H 1.09001 * 110.48542 * 266.11903 * 26 25 23 52 52 H 0.97001 * 124.42686 * 179.63932 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.6852 -0.2192 4.8999 9 6 0.1552 -0.2190 4.9002 10 6 2.1951 1.2237 4.8987 11 6 1.6548 1.9530 6.1329 12 7 2.0178 1.1858 7.3322 13 6 2.6813 1.7849 8.3694 14 1 3.3230 1.1986 9.0105 15 6 2.5292 3.1458 8.5969 16 7 1.5161 3.7933 8.0616 17 14 3.7626 4.0582 9.6626 18 1 4.8643 4.5759 8.8121 19 1 3.0864 5.1927 10.3416 20 1 4.3175 3.1313 10.6815 21 6 1.6548 -0.2365 7.3977 22 6 2.1956 -0.9409 6.1494 23 6 2.0400 -0.7213 -1.2492 24 1 3.1252 -0.8171 -1.2122 25 6 1.6143 0.0459 -2.5207 26 6 1.3450 -1.1104 -3.5113 27 6 1.0202 -2.2915 -2.6235 28 8 0.4824 -3.3129 -2.9953 29 7 1.4167 -2.0452 -1.3614 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.1458 0.5363 2.5436 34 1 1.8310 -1.9684 3.6506 35 1 3.2846 -0.9412 3.6509 36 1 -0.2083 -1.2466 4.9004 37 1 -0.2079 0.2947 5.7903 38 1 -0.2081 0.2947 4.0101 39 1 3.2847 1.2246 4.9237 40 1 1.8510 1.7305 3.9972 41 1 0.5698 2.0325 6.0645 42 1 2.0934 2.9492 6.1898 43 1 1.4096 4.7442 8.2209 44 1 0.5698 -0.3355 7.4324 45 1 2.0915 -0.6865 8.2892 46 1 1.8518 -1.9752 6.1380 47 1 3.2853 -0.9197 6.1621 48 1 0.7084 0.6252 -2.3418 49 1 2.4208 0.6861 -2.8783 50 1 0.4978 -0.8723 -4.1544 51 1 2.2332 -1.3154 -4.1090 52 1 1.3044 -2.6618 -0.6210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733451989.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:16 Heat of formation + Delta-G solvation = -89.110626 kcal Electronic energy + Delta-G solvation = -30489.707201 eV Core-core repulsion = 26487.910956 eV Total energy + Delta-G solvation = -4001.796245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83097 -40.80557 -39.80716 -37.78839 -36.55463 -34.80870 -33.77846 -32.49804 -32.12105 -31.56950 -28.73564 -28.14501 -27.77303 -26.04448 -24.89399 -23.88999 -22.62565 -21.98010 -21.55598 -20.78763 -19.62600 -18.44317 -18.04311 -17.88944 -17.60193 -16.88779 -16.79897 -16.33847 -15.85581 -15.74845 -15.48149 -15.20877 -15.10406 -15.01666 -14.75059 -14.53132 -14.34920 -14.32389 -14.01963 -13.48475 -13.39204 -13.20740 -13.09479 -12.95920 -12.73639 -12.67602 -12.57457 -12.44854 -12.33181 -12.25229 -12.06539 -11.88899 -11.79329 -11.72719 -11.45422 -11.15059 -11.04286 -10.91943 -10.69888 -10.48064 -10.06999 -10.01519 -8.62617 -7.85956 -5.29235 1.46209 1.47963 1.55961 1.60264 1.66820 2.23498 2.46145 2.51896 3.27670 3.40607 3.48553 3.73058 3.75523 3.82232 3.87743 3.89099 3.96410 4.08692 4.28049 4.32517 4.42613 4.45963 4.53202 4.62719 4.72009 4.77490 4.78587 4.83470 4.86365 4.87065 4.89598 4.92742 4.96979 5.07526 5.14471 5.17329 5.19836 5.28580 5.32618 5.39210 5.41199 5.46762 5.51479 5.57685 5.68442 5.85712 5.87346 6.11165 6.41698 6.58193 7.18479 7.23485 7.27724 7.90947 8.40869 9.19604 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.002224 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.403638 B =12587.679685 C =13005.690882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 H 0.145 0.855 4 C 0.509 3.491 5 O -0.583 6.583 6 N -0.713 5.713 7 C 0.142 3.858 8 C -0.054 4.054 9 C -0.135 4.135 10 C -0.114 4.114 11 C 0.178 3.822 12 N -0.610 5.610 13 C -0.261 4.261 14 H 0.060 0.940 15 C -0.049 4.049 16 N -0.931 5.931 17 Si 0.961 3.039 18 H -0.286 1.286 19 H -0.295 1.295 20 H -0.273 1.273 21 C 0.142 3.858 22 C -0.113 4.113 23 C 0.144 3.856 24 H 0.083 0.917 25 C -0.118 4.118 26 C -0.148 4.148 27 C 0.504 3.496 28 O -0.599 6.599 29 N -0.715 5.715 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.008 0.992 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.021 0.979 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.121 0.879 50 H 0.114 0.886 51 H 0.117 0.883 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 -3.526 -21.513 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.163 0.837 4 C 0.297 3.703 5 O -0.463 6.463 6 N -0.365 5.365 7 C 0.018 3.982 8 C -0.054 4.054 9 C -0.193 4.193 10 C -0.153 4.153 11 C 0.052 3.948 12 N -0.334 5.334 13 C -0.391 4.391 14 H 0.078 0.922 15 C -0.244 4.244 16 N -0.577 5.577 17 Si 0.790 3.210 18 H -0.213 1.213 19 H -0.221 1.221 20 H -0.198 1.198 21 C 0.017 3.983 22 C -0.152 4.152 23 C 0.039 3.961 24 H 0.101 0.899 25 C -0.156 4.156 26 C -0.188 4.188 27 C 0.292 3.708 28 O -0.481 6.481 29 N -0.368 5.368 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.125 0.875 49 H 0.140 0.860 50 H 0.133 0.867 51 H 0.135 0.865 52 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.473 -4.496 -21.803 22.310 hybrid contribution 0.375 0.444 1.698 1.795 sum -1.098 -4.052 -20.105 20.538 Atomic orbital electron populations 1.21833 0.91370 1.02406 1.04580 1.21745 0.98909 1.02354 0.90473 0.83696 1.21207 0.79305 0.84254 0.85523 1.90702 1.39958 1.28271 1.87391 1.46043 1.52945 1.32309 1.05162 1.21229 0.98176 0.95553 0.83263 1.20554 0.96378 0.95004 0.93477 1.21858 0.93649 1.01863 1.01888 1.22030 0.99523 0.95259 0.98524 1.20621 0.95490 0.94534 0.84116 1.44301 1.66906 1.06215 1.15945 1.19474 1.19125 0.92431 1.08085 0.92180 1.25689 0.98718 0.98969 1.01039 1.70162 1.29343 1.08647 1.49577 0.85355 0.78865 0.78132 0.78635 1.21282 1.22142 1.19751 1.21035 0.96514 0.84535 0.96218 1.21885 1.00090 0.98767 0.94470 1.21663 0.97770 0.81468 0.95178 0.89921 1.22870 1.05294 0.96532 0.90859 1.22387 1.05685 0.92394 0.98323 1.21771 0.75965 0.88632 0.84412 1.90711 1.46183 1.32545 1.78692 1.46535 1.59764 1.19941 1.10516 0.93849 0.90795 0.88820 0.75139 0.91827 0.92955 0.91985 0.93596 0.91513 0.93966 0.90846 0.97413 0.93376 0.94143 0.96069 0.93611 0.90338 0.93024 0.87548 0.86049 0.86745 0.86521 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.66 71.98 0.62 -0.69 16 2 C -0.11 -1.19 2.59 -11.54 -0.03 -1.22 16 3 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 4 C 0.51 9.81 6.97 87.66 0.61 10.43 16 5 O -0.58 -15.92 14.95 -3.03 -0.05 -15.96 16 6 N -0.71 -13.44 4.84 -463.08 -2.24 -15.68 16 7 C 0.14 3.39 4.56 86.38 0.39 3.79 16 8 C -0.05 -1.46 0.53 -52.15 -0.03 -1.49 16 9 C -0.14 -3.41 7.54 71.98 0.54 -2.87 16 10 C -0.11 -3.71 4.75 30.67 0.15 -3.56 16 11 C 0.18 7.86 4.84 86.36 0.42 8.28 16 12 N -0.61 -29.28 2.99 -699.07 -2.09 -31.37 16 13 C -0.26 -14.08 9.59 84.04 0.81 -13.28 16 14 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 15 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 16 N -0.93 -53.35 11.19 21.65 0.24 -53.11 16 17 Si 0.96 44.21 29.59 68.60 2.03 46.24 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.14 5.60 6.05 86.36 0.52 6.12 16 22 C -0.11 -3.48 4.91 30.68 0.15 -3.33 16 23 C 0.14 1.67 2.72 45.45 0.12 1.79 16 24 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 25 C -0.12 -0.54 6.53 31.65 0.21 -0.33 16 26 C -0.15 -1.42 6.86 30.59 0.21 -1.21 16 27 C 0.50 10.41 8.43 87.87 0.74 11.15 16 28 O -0.60 -18.70 18.03 -3.00 -0.05 -18.76 16 29 N -0.72 -13.09 4.59 -439.25 -2.01 -15.10 16 30 H 0.04 0.59 7.46 -2.39 -0.02 0.57 16 31 H 0.07 0.58 7.56 -2.39 -0.02 0.56 16 32 H 0.09 0.47 6.29 -2.39 -0.02 0.45 16 33 H 0.41 6.27 5.57 -92.71 -0.52 5.75 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.45 4.98 -2.39 -0.01 1.44 16 38 H 0.07 1.37 6.86 -2.38 -0.02 1.35 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.94 6.83 -2.39 -0.02 1.92 16 41 H 0.01 0.36 6.69 -2.39 -0.02 0.35 16 42 H 0.05 2.49 6.04 -2.39 -0.01 2.47 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.09 16 44 H 0.02 0.84 6.69 -2.39 -0.02 0.82 16 45 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.11 0.17 6.04 -2.38 -0.01 0.16 16 49 H 0.12 -0.02 8.14 -2.39 -0.02 -0.03 16 50 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 52 H 0.40 8.99 8.00 -92.71 -0.74 8.25 16 Total: -1.00 -75.22 390.43 1.36 -73.86 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.32 Total: 18.53 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.85 Total: 11.35 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -6.11 Total: -115.26 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.10 Total: -34.72 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -75.22 1.36 -73.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733451989.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.249 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds