Wall clock time and date at job start Tue Mar 31 2020 20:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 C 1.52996 * 109.47444 * 119.99934 * 2 1 3 5 5 C 1.50702 * 109.47104 * 294.99937 * 4 2 1 6 6 O 1.21277 * 119.99986 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99918 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00197 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47273 * 184.95502 * 8 7 5 10 10 N 1.46900 * 112.90585 * 292.57950 * 9 8 7 11 11 C 1.46903 * 111.00311 * 305.93860 * 10 9 8 12 12 C 1.50702 * 109.46776 * 184.68493 * 11 10 9 13 13 O 1.21288 * 120.00132 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99431 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99556 * 179.97438 * 14 12 11 16 16 H 1.07994 * 120.00500 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99327 * 180.02562 * 15 14 12 18 18 N 1.31399 * 120.00678 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99284 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47337 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46793 * 120.00008 * 19 17 15 22 22 H 1.48501 * 109.47007 * 239.99770 * 19 17 15 23 23 C 1.53775 * 113.61712 * 63.83684 * 9 8 7 24 24 C 1.53774 * 87.08492 * 89.11565 * 23 9 8 25 25 C 1.53781 * 113.61406 * 161.33549 * 9 8 7 26 26 C 1.52998 * 109.46796 * 240.00142 * 2 1 3 27 27 C 1.53000 * 117.49756 * 128.61924 * 26 2 1 28 28 C 1.53000 * 60.00305 * 252.50714 * 27 26 2 29 29 H 1.09002 * 109.46845 * 299.99907 * 1 2 3 30 30 H 1.08998 * 109.47668 * 59.99757 * 1 2 3 31 31 H 1.08994 * 109.47087 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47416 * 174.99907 * 4 2 1 33 33 H 1.08999 * 109.46848 * 54.99974 * 4 2 1 34 34 H 0.97003 * 120.00026 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47186 * 64.95456 * 8 7 5 36 36 H 1.09004 * 109.47049 * 304.95115 * 8 7 5 37 37 H 1.00894 * 110.99886 * 181.97693 * 10 9 8 38 38 H 1.09002 * 109.46282 * 304.68030 * 11 10 9 39 39 H 1.08994 * 109.47079 * 64.68398 * 11 10 9 40 40 H 0.96997 * 120.00203 * 359.97438 * 14 12 11 41 41 H 0.97000 * 120.00417 * 180.02562 * 18 17 15 42 42 H 1.09009 * 113.61173 * 334.56656 * 23 9 8 43 43 H 1.09001 * 113.61464 * 203.66554 * 23 9 8 44 44 H 1.08996 * 113.62044 * 139.98102 * 24 23 9 45 45 H 1.09001 * 113.61742 * 270.88971 * 24 23 9 46 46 H 1.08997 * 113.61514 * 156.33288 * 25 9 8 47 47 H 1.08997 * 113.69294 * 25.43737 * 25 9 8 48 48 H 1.08997 * 115.54966 * 274.33109 * 26 2 1 49 49 H 1.08998 * 117.50239 * 359.97438 * 27 26 2 50 50 H 1.09008 * 117.49885 * 145.02165 * 27 26 2 51 51 H 1.08999 * 117.50155 * 252.50990 * 28 27 26 52 52 H 1.09006 * 117.51336 * 107.47547 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 0.0571 2.4766 6 8 1.0111 1.0870 2.3633 7 7 1.9847 -0.3918 3.7001 8 6 1.5967 0.3644 4.8933 9 6 2.2104 -0.2890 6.1332 10 7 1.6440 -1.6135 6.4211 11 6 0.1795 -1.5503 6.5173 12 6 -0.3557 -2.8986 6.9256 13 8 0.4077 -3.8214 7.1172 14 7 -1.6826 -3.0788 7.0779 15 6 -2.1696 -4.3056 7.4490 16 1 -1.4899 -5.1273 7.6196 17 6 -3.5377 -4.4915 7.6054 18 7 -4.3647 -3.4916 7.3984 19 14 -4.2012 -6.1628 8.1117 20 1 -3.0725 -7.1125 8.2821 21 1 -4.9389 -6.0347 9.3940 22 1 -5.1196 -6.6698 7.0607 23 6 3.7478 -0.2600 6.1477 24 6 3.6373 1.1013 6.8544 25 6 2.2597 0.6394 7.3582 26 6 2.0400 -0.7212 -1.2493 27 6 3.0740 0.0052 -2.1117 28 6 1.6356 -0.1495 -2.6097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1264 -0.7994 1.2055 33 1 1.6055 -1.7197 1.2951 34 1 2.4886 -1.2157 3.7907 35 1 0.5106 0.3676 4.9842 36 1 1.9571 1.3895 4.8068 37 1 2.0451 -2.0035 7.2608 38 1 -0.1038 -0.8062 7.2617 39 1 -0.2365 -1.2723 5.5489 40 1 -2.2931 -2.3407 6.9251 41 1 -5.3197 -3.6213 7.5080 42 1 4.1928 -0.2014 5.1543 43 1 4.1934 -1.0385 6.7670 44 1 4.3689 1.2410 7.6501 45 1 3.5901 1.9469 6.1682 46 1 2.2984 0.1068 8.3084 47 1 1.5037 1.4244 7.3435 48 1 2.1266 -1.8044 -1.1643 49 1 3.3907 0.9971 -1.7894 50 1 3.8415 -0.6001 -2.5943 51 1 1.4567 -0.8565 -3.4197 52 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733728513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:14 Heat of formation + Delta-G solvation = -41.929836 kcal Electronic energy + Delta-G solvation = -29566.399048 eV Core-core repulsion = 25566.648716 eV Total energy + Delta-G solvation = -3999.750332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47260 -39.45972 -38.06639 -37.87511 -34.36897 -34.12919 -33.27338 -33.20494 -31.22257 -28.84188 -27.17693 -26.45226 -25.74547 -24.35766 -23.70515 -22.49559 -22.25159 -20.43068 -19.88940 -19.26258 -18.83752 -17.90576 -16.97214 -16.81080 -16.24009 -15.64916 -15.51705 -15.31623 -15.12271 -14.62908 -14.51068 -14.44321 -14.08233 -13.82765 -13.47343 -13.39684 -13.16590 -12.91781 -12.71501 -12.50508 -12.39676 -12.10983 -11.92182 -11.81097 -11.57614 -11.47773 -11.37341 -11.25023 -11.10385 -11.02825 -10.89641 -10.70484 -10.51310 -10.38757 -10.35552 -10.23212 -10.10950 -9.69130 -9.53991 -8.99153 -8.46446 -8.09426 -7.97893 -6.43243 -3.84316 2.68186 3.14173 3.15041 3.25790 3.32754 3.57695 3.87886 4.04771 4.25359 4.41223 4.43658 4.49972 4.57176 4.58797 4.70091 4.73424 4.79586 4.99404 5.06617 5.12012 5.23555 5.27380 5.31727 5.37988 5.42615 5.45278 5.57075 5.59317 5.63962 5.65003 5.66759 5.72070 5.76458 5.79084 5.80651 5.88301 5.91198 5.96875 6.06126 6.07304 6.17080 6.25284 6.26363 6.34103 6.52014 7.17366 7.53684 7.55733 7.61752 8.04390 8.27392 8.58680 9.15843 9.52264 10.02937 10.74428 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008612 B = 0.002764 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.529911 B =10127.681356 C =12550.347952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.512 3.488 6 O -0.545 6.545 7 N -0.717 5.717 8 C 0.148 3.852 9 C 0.080 3.920 10 N -0.652 5.652 11 C 0.049 3.951 12 C 0.440 3.560 13 O -0.586 6.586 14 N -0.562 5.562 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.900 5.900 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.167 4.167 26 C -0.148 4.148 27 C -0.183 4.183 28 C -0.179 4.179 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.408 0.592 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.355 0.645 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.055 10.658 -11.856 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.369 5.369 8 C 0.024 3.976 9 C -0.012 4.012 10 N -0.284 5.284 11 C -0.083 4.083 12 C 0.225 3.775 13 O -0.471 6.471 14 N -0.198 5.198 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.541 5.541 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.163 4.163 24 C -0.178 4.178 25 C -0.208 4.208 26 C -0.167 4.167 27 C -0.220 4.220 28 C -0.216 4.216 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.176 0.824 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.111 0.889 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.879 10.548 -12.437 22.076 hybrid contribution -0.765 -0.380 1.126 1.413 sum 14.114 10.168 -11.311 20.750 Atomic orbital electron populations 1.21935 0.94269 1.01788 1.02894 1.20435 0.96515 0.98688 0.90456 0.90540 1.21712 1.02847 1.00514 0.92443 1.20673 0.79119 0.85670 0.84660 1.90660 1.39944 1.24926 1.86742 1.45868 1.57844 1.27986 1.05181 1.21049 0.99830 0.94506 0.82251 1.22550 0.95309 0.89120 0.94239 1.60012 1.04348 1.19830 1.44238 1.21673 0.88797 0.96636 1.01232 1.19800 0.83314 0.89586 0.84756 1.90516 1.56964 1.43294 1.56290 1.41875 1.05195 1.12856 1.59921 1.19742 0.91296 0.89149 1.42712 0.87873 1.25273 0.95882 0.99258 0.97530 1.69615 1.03802 1.31347 1.49375 0.85807 0.78880 0.81640 0.78060 1.19215 1.20751 1.20712 1.23031 0.94484 0.97455 1.01315 1.22754 0.97403 0.97334 1.00275 1.23665 0.98009 1.00432 0.98661 1.22378 1.03427 0.99221 0.91634 1.23028 0.92520 1.02030 1.04386 1.22922 0.97982 1.03392 0.97259 0.90545 0.93010 0.93092 0.88947 0.88606 0.75649 0.91126 0.90878 0.82369 0.93703 0.89626 0.77455 0.91872 0.91050 0.89408 0.91261 0.90139 0.89545 0.91167 0.87732 0.88873 0.89023 0.88964 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.77 37.16 0.33 -1.36 16 2 C -0.04 -0.41 2.19 -90.62 -0.20 -0.61 16 3 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 4 C -0.14 -1.27 5.16 -27.88 -0.14 -1.41 16 5 C 0.51 6.26 7.55 -10.99 -0.08 6.18 16 6 O -0.54 -8.42 13.96 5.56 0.08 -8.34 16 7 N -0.72 -8.15 5.21 -60.30 -0.31 -8.47 16 8 C 0.15 1.77 4.66 -4.04 -0.02 1.75 16 9 C 0.08 0.91 0.67 -130.79 -0.09 0.82 16 10 N -0.65 -9.60 6.13 -100.39 -0.62 -10.21 16 11 C 0.05 0.84 5.52 -4.97 -0.03 0.82 16 12 C 0.44 10.20 7.81 -10.98 -0.09 10.11 16 13 O -0.59 -15.49 15.67 5.55 0.09 -15.40 16 14 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 19 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.12 -1.18 7.25 -25.93 -0.19 -1.37 16 24 C -0.14 -1.22 7.73 -25.92 -0.20 -1.42 16 25 C -0.17 -1.72 6.96 -25.92 -0.18 -1.90 16 26 C -0.15 -1.23 5.15 -90.62 -0.47 -1.70 16 27 C -0.18 -1.36 10.18 -26.73 -0.27 -1.63 16 28 C -0.18 -1.39 9.74 -26.73 -0.26 -1.65 16 29 H 0.08 1.03 5.95 -51.93 -0.31 0.73 16 30 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.41 4.28 8.39 -40.82 -0.34 3.93 16 35 H 0.07 0.97 6.38 -51.93 -0.33 0.64 16 36 H 0.07 0.85 7.31 -51.93 -0.38 0.47 16 37 H 0.36 5.55 8.17 -39.29 -0.32 5.23 16 38 H 0.04 0.72 7.80 -51.93 -0.41 0.31 16 39 H 0.09 1.45 6.63 -51.93 -0.34 1.11 16 40 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.07 0.63 7.86 -51.92 -0.41 0.22 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.67 7.62 -51.93 -0.40 0.28 16 46 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 47 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 48 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 49 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 50 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 52 H 0.09 0.75 7.61 -51.93 -0.39 0.36 16 LS Contribution 416.14 15.07 6.27 6.27 Total: -1.00 -31.51 416.14 -9.86 -41.37 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -8.88 Total: 18.25 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.13 Total: -1.34 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.26 Total: -56.80 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.16 Total: -23.74 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.51 -9.86 -41.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733728513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.562 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds