Wall clock time and date at job start Tue Mar 31 2020 20:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 C 1.52996 * 109.47444 * 119.99934 * 2 1 3 5 5 C 1.50702 * 109.47104 * 294.99937 * 4 2 1 6 6 O 1.21277 * 119.99986 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99918 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00197 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47273 * 184.95502 * 8 7 5 10 10 N 1.46900 * 112.90585 * 292.57950 * 9 8 7 11 11 C 1.46903 * 111.00311 * 305.93860 * 10 9 8 12 12 C 1.50702 * 109.46776 * 184.68493 * 11 10 9 13 13 O 1.21288 * 120.00132 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99431 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99556 * 179.97438 * 14 12 11 16 16 H 1.07994 * 120.00500 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99327 * 180.02562 * 15 14 12 18 18 N 1.31399 * 120.00678 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99284 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47337 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46793 * 120.00008 * 19 17 15 22 22 H 1.48501 * 109.47007 * 239.99770 * 19 17 15 23 23 C 1.53775 * 113.61712 * 63.83684 * 9 8 7 24 24 C 1.53774 * 87.08492 * 89.11565 * 23 9 8 25 25 C 1.53781 * 113.61406 * 161.33549 * 9 8 7 26 26 C 1.52998 * 109.46796 * 240.00142 * 2 1 3 27 27 C 1.53000 * 117.49756 * 128.61924 * 26 2 1 28 28 C 1.53000 * 60.00305 * 252.50714 * 27 26 2 29 29 H 1.09002 * 109.46845 * 299.99907 * 1 2 3 30 30 H 1.08998 * 109.47668 * 59.99757 * 1 2 3 31 31 H 1.08994 * 109.47087 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47416 * 174.99907 * 4 2 1 33 33 H 1.08999 * 109.46848 * 54.99974 * 4 2 1 34 34 H 0.97003 * 120.00026 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47186 * 64.95456 * 8 7 5 36 36 H 1.09004 * 109.47049 * 304.95115 * 8 7 5 37 37 H 1.00894 * 110.99886 * 181.97693 * 10 9 8 38 38 H 1.09002 * 109.46282 * 304.68030 * 11 10 9 39 39 H 1.08994 * 109.47079 * 64.68398 * 11 10 9 40 40 H 0.96997 * 120.00203 * 359.97438 * 14 12 11 41 41 H 0.97000 * 120.00417 * 180.02562 * 18 17 15 42 42 H 1.09009 * 113.61173 * 334.56656 * 23 9 8 43 43 H 1.09001 * 113.61464 * 203.66554 * 23 9 8 44 44 H 1.08996 * 113.62044 * 139.98102 * 24 23 9 45 45 H 1.09001 * 113.61742 * 270.88971 * 24 23 9 46 46 H 1.08997 * 113.61514 * 156.33288 * 25 9 8 47 47 H 1.08997 * 113.69294 * 25.43737 * 25 9 8 48 48 H 1.08997 * 115.54966 * 274.33109 * 26 2 1 49 49 H 1.08998 * 117.50239 * 359.97438 * 27 26 2 50 50 H 1.09008 * 117.49885 * 145.02165 * 27 26 2 51 51 H 1.08999 * 117.50155 * 252.50990 * 28 27 26 52 52 H 1.09006 * 117.51336 * 107.47547 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 0.0571 2.4766 6 8 1.0111 1.0870 2.3633 7 7 1.9847 -0.3918 3.7001 8 6 1.5967 0.3644 4.8933 9 6 2.2104 -0.2890 6.1332 10 7 1.6440 -1.6135 6.4211 11 6 0.1795 -1.5503 6.5173 12 6 -0.3557 -2.8986 6.9256 13 8 0.4077 -3.8214 7.1172 14 7 -1.6826 -3.0788 7.0779 15 6 -2.1696 -4.3056 7.4490 16 1 -1.4899 -5.1273 7.6196 17 6 -3.5377 -4.4915 7.6054 18 7 -4.3647 -3.4916 7.3984 19 14 -4.2012 -6.1628 8.1117 20 1 -3.0725 -7.1125 8.2821 21 1 -4.9389 -6.0347 9.3940 22 1 -5.1196 -6.6698 7.0607 23 6 3.7478 -0.2600 6.1477 24 6 3.6373 1.1013 6.8544 25 6 2.2597 0.6394 7.3582 26 6 2.0400 -0.7212 -1.2493 27 6 3.0740 0.0052 -2.1117 28 6 1.6356 -0.1495 -2.6097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1264 -0.7994 1.2055 33 1 1.6055 -1.7197 1.2951 34 1 2.4886 -1.2157 3.7907 35 1 0.5106 0.3676 4.9842 36 1 1.9571 1.3895 4.8068 37 1 2.0451 -2.0035 7.2608 38 1 -0.1038 -0.8062 7.2617 39 1 -0.2365 -1.2723 5.5489 40 1 -2.2931 -2.3407 6.9251 41 1 -5.3197 -3.6213 7.5080 42 1 4.1928 -0.2014 5.1543 43 1 4.1934 -1.0385 6.7670 44 1 4.3689 1.2410 7.6501 45 1 3.5901 1.9469 6.1682 46 1 2.2984 0.1068 8.3084 47 1 1.5037 1.4244 7.3435 48 1 2.1266 -1.8044 -1.1643 49 1 3.3907 0.9971 -1.7894 50 1 3.8415 -0.6001 -2.5943 51 1 1.4567 -0.8565 -3.4197 52 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733728513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:13 Heat of formation + Delta-G solvation = -63.310426 kcal Electronic energy + Delta-G solvation = -29567.326180 eV Core-core repulsion = 25566.648716 eV Total energy + Delta-G solvation = -4000.677464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44710 -40.47185 -39.80523 -38.63172 -36.07170 -35.31460 -34.58465 -34.05777 -33.25567 -29.77422 -28.59629 -27.47782 -26.69590 -26.01019 -24.52175 -23.22592 -23.07684 -21.35143 -21.06861 -20.64343 -19.93046 -19.75430 -18.19231 -17.82027 -17.22629 -16.96118 -16.49620 -16.43558 -16.34121 -16.01706 -15.84968 -15.78137 -15.32573 -14.96254 -14.66113 -14.37756 -14.22640 -13.94811 -13.93857 -13.69613 -13.54582 -13.29885 -13.16044 -12.94541 -12.93879 -12.50078 -12.42649 -12.41317 -12.21940 -12.13402 -12.03063 -11.94259 -11.70366 -11.53380 -11.49546 -11.23516 -11.17223 -10.77632 -10.65958 -10.36594 -10.03833 -9.97650 -9.29308 -8.48223 -5.97335 1.35490 1.40919 1.55254 1.72313 2.02078 2.22796 2.28580 2.88134 2.95742 3.18853 3.42367 3.57898 3.62579 3.68240 3.78126 3.81383 3.93794 4.05272 4.11710 4.25305 4.25477 4.39595 4.43206 4.46669 4.50144 4.53894 4.55297 4.66389 4.73410 4.75872 4.82582 4.83828 4.85963 4.94043 5.03465 5.07027 5.08503 5.10316 5.19344 5.26429 5.31504 5.38344 5.39934 5.42490 5.48529 5.58486 5.88482 6.08271 6.38450 6.56850 6.64502 7.10322 7.33330 7.53480 8.07507 8.69464 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008612 B = 0.002764 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.529911 B =10127.681356 C =12550.347952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 H 0.063 0.937 4 C -0.130 4.130 5 C 0.507 3.493 6 O -0.581 6.581 7 N -0.711 5.711 8 C 0.150 3.850 9 C 0.078 3.922 10 N -0.656 5.656 11 C 0.068 3.932 12 C 0.440 3.560 13 O -0.619 6.619 14 N -0.574 5.574 15 C -0.331 4.331 16 H 0.081 0.919 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.169 4.169 26 C -0.153 4.153 27 C -0.176 4.176 28 C -0.183 4.183 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.414 0.586 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.351 0.649 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.394 0.606 41 H 0.277 0.723 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.354 10.607 -12.368 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 H 0.082 0.918 4 C -0.169 4.169 5 C 0.296 3.704 6 O -0.461 6.461 7 N -0.363 5.363 8 C 0.026 3.974 9 C -0.013 4.013 10 N -0.288 5.288 11 C -0.064 4.064 12 C 0.227 3.773 13 O -0.506 6.506 14 N -0.211 5.211 15 C -0.461 4.461 16 H 0.099 0.901 17 C -0.214 4.214 18 N -0.563 5.563 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.155 4.155 24 C -0.166 4.166 25 C -0.209 4.209 26 C -0.171 4.171 27 C -0.213 4.213 28 C -0.220 4.220 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.250 0.750 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.172 0.828 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.131 0.869 49 H 0.110 0.890 50 H 0.123 0.877 51 H 0.120 0.880 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.195 10.513 -12.952 23.249 hybrid contribution -1.141 -0.312 1.274 1.739 sum 15.054 10.200 -11.677 21.611 Atomic orbital electron populations 1.21886 0.95615 1.01404 1.01738 1.20352 0.95334 0.98359 0.91616 0.91814 1.21741 1.04453 1.00075 0.90659 1.21207 0.78362 0.85351 0.85514 1.90649 1.41576 1.26669 1.87248 1.45863 1.57465 1.28014 1.04928 1.20985 0.98644 0.95056 0.82757 1.22662 0.96546 0.87637 0.94478 1.60018 1.02581 1.22213 1.44004 1.21439 0.90471 0.92961 1.01564 1.20782 0.82400 0.91323 0.82786 1.90485 1.57604 1.45209 1.57283 1.41965 1.06117 1.12322 1.60677 1.19707 0.91776 0.89788 1.44813 0.90098 1.26074 0.95590 1.02828 0.96924 1.69682 1.04243 1.32914 1.49442 0.84862 0.78049 0.77198 0.78185 1.19561 1.19605 1.19702 1.23013 0.92426 0.98003 1.02069 1.22715 0.96404 0.96979 1.00479 1.23662 0.99287 1.00092 0.97858 1.22320 1.04268 0.99521 0.90969 1.23087 0.92534 1.02030 1.03601 1.22986 0.98381 1.03411 0.97254 0.93290 0.92537 0.93007 0.86369 0.87832 0.74952 0.93190 0.90263 0.82835 0.92132 0.89166 0.77219 0.91317 0.90091 0.89272 0.89938 0.89449 0.89834 0.91155 0.86869 0.88992 0.87694 0.88029 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.77 71.98 0.63 -2.72 16 2 C -0.04 -0.71 2.19 -10.79 -0.02 -0.73 16 3 H 0.06 1.37 7.71 -2.39 -0.02 1.35 16 4 C -0.13 -2.26 5.16 29.85 0.15 -2.10 16 5 C 0.51 12.16 7.55 87.66 0.66 12.82 16 6 O -0.58 -18.19 13.96 -3.02 -0.04 -18.24 16 7 N -0.71 -15.49 5.21 -463.07 -2.41 -17.90 16 8 C 0.15 3.46 4.66 86.38 0.40 3.86 16 9 C 0.08 1.67 0.67 4.05 0.00 1.67 16 10 N -0.66 -18.85 6.13 -471.54 -2.89 -21.74 16 11 C 0.07 2.33 5.52 85.56 0.47 2.80 16 12 C 0.44 20.69 7.81 87.66 0.68 21.38 16 13 O -0.62 -33.34 15.67 -3.05 -0.05 -33.39 16 14 N -0.57 -29.65 5.29 -306.98 -1.62 -31.27 16 15 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 16 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 17 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 18 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 19 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 C -0.12 -1.95 7.25 31.12 0.23 -1.73 16 24 C -0.13 -1.91 7.73 31.12 0.24 -1.66 16 25 C -0.17 -3.20 6.96 31.12 0.22 -2.98 16 26 C -0.15 -2.28 5.15 -10.79 -0.06 -2.34 16 27 C -0.18 -2.28 10.18 30.59 0.31 -1.97 16 28 C -0.18 -2.61 9.74 30.60 0.30 -2.31 16 29 H 0.05 1.38 5.95 -2.39 -0.01 1.36 16 30 H 0.06 1.17 7.29 -2.39 -0.02 1.15 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.41 8.06 8.39 -92.71 -0.78 7.28 16 35 H 0.05 1.37 6.38 -2.39 -0.02 1.35 16 36 H 0.08 1.75 7.31 -2.39 -0.02 1.74 16 37 H 0.35 10.76 8.17 -89.70 -0.73 10.03 16 38 H 0.06 1.90 7.80 -2.39 -0.02 1.88 16 39 H 0.09 3.06 6.63 -2.39 -0.02 3.04 16 40 H 0.39 19.69 7.90 -92.71 -0.73 18.96 16 41 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.08 1.22 7.86 -2.38 -0.02 1.20 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.22 7.62 -2.39 -0.02 1.20 16 46 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 47 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 48 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 49 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 50 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.09 1.35 7.61 -2.38 -0.02 1.33 16 Total: -1.00 -68.77 416.14 -0.50 -69.27 By element: Atomic # 1 Polarization: 53.95 SS G_CDS: -1.30 Total: 52.65 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.50 Total: 5.65 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -6.64 Total: -120.99 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.09 Total: -51.62 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -68.77 -0.50 -69.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733728513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.962 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds