Wall clock time and date at job start Tue Mar 31 2020 20:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47513 * 2 1 4 4 N 1.46899 * 109.47047 * 239.99559 * 2 1 3 5 5 C 1.46898 * 111.00135 * 85.00259 * 4 2 1 6 6 C 1.50695 * 109.47429 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00043 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00272 * 180.02562 * 6 5 4 9 9 C 1.37090 * 120.00233 * 179.97438 * 8 6 5 10 10 H 1.08005 * 120.00384 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00240 * 179.97438 * 9 8 6 12 12 N 1.31416 * 120.00019 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00415 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47136 * 59.99751 * 13 11 9 15 15 H 1.48497 * 109.47543 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47164 * 300.00223 * 13 11 9 17 17 C 1.52999 * 109.46859 * 119.99927 * 2 1 3 18 18 H 1.09007 * 109.47200 * 184.99932 * 17 2 1 19 19 C 1.52995 * 109.47524 * 64.99941 * 17 2 1 20 20 N 1.46499 * 109.47155 * 304.99797 * 17 2 1 21 21 C 1.34784 * 119.99971 * 205.00183 * 20 17 2 22 22 O 1.21274 * 119.99897 * 359.72827 * 21 20 17 23 23 C 1.50695 * 119.99635 * 179.97438 * 21 20 17 24 24 C 1.51847 * 108.65336 * 304.09111 * 23 21 20 25 25 C 1.53081 * 110.74742 * 172.39458 * 24 23 21 26 26 C 1.51371 * 108.59152 * 85.74549 * 25 24 23 27 27 C 1.29525 * 120.36047 * 288.07934 * 26 25 24 28 28 C 1.51370 * 120.36287 * 0.02562 * 27 26 25 29 29 C 1.51852 * 108.64718 * 180.02562 * 23 21 20 30 30 H 1.09006 * 109.47277 * 60.00292 * 1 2 3 31 31 H 1.09002 * 109.47613 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47386 * 300.00065 * 1 2 3 33 33 H 1.00903 * 111.00213 * 208.95477 * 4 2 1 34 34 H 1.09001 * 109.46920 * 300.00103 * 5 4 2 35 35 H 1.09000 * 109.47248 * 59.99459 * 5 4 2 36 36 H 0.97002 * 120.00026 * 359.97438 * 8 6 5 37 37 H 0.96992 * 119.99884 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.47831 * 179.97438 * 19 17 2 39 39 H 1.08996 * 109.47227 * 299.99947 * 19 17 2 40 40 H 1.09005 * 109.47314 * 59.99924 * 19 17 2 41 41 H 0.96999 * 119.99984 * 25.00030 * 20 17 2 42 42 H 1.08995 * 108.60517 * 61.98717 * 23 21 20 43 43 H 1.09006 * 109.22212 * 292.72728 * 24 23 21 44 44 H 1.08995 * 109.21861 * 52.07513 * 24 23 21 45 45 H 1.09002 * 109.61964 * 326.01631 * 25 24 23 46 46 H 1.08992 * 109.62520 * 205.47869 * 25 24 23 47 47 H 1.08005 * 119.81839 * 108.10700 * 26 25 24 48 48 H 1.08002 * 119.81547 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.61456 * 312.16694 * 28 27 26 50 50 H 1.08999 * 109.61526 * 191.63416 * 28 27 26 51 51 H 1.08999 * 109.22423 * 307.92754 * 29 23 21 52 52 H 1.09003 * 109.21793 * 67.32176 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5873 -0.5221 -3.5560 7 8 2.8676 -1.6990 -3.4701 8 7 2.7282 0.1201 -4.7325 9 6 3.1880 -0.5570 -5.8323 10 1 3.4369 -1.6052 -5.7561 11 6 3.3328 0.1050 -7.0454 12 7 3.0295 1.3803 -7.1383 13 14 3.9586 -0.8178 -8.5442 14 1 3.0366 -1.9395 -8.8554 15 1 4.0227 0.1073 -9.7040 16 1 5.3146 -1.3548 -8.2644 17 6 2.0399 -0.7212 1.2493 18 1 3.1263 -0.6444 1.2952 19 6 1.6351 -2.1954 1.1881 20 7 1.4558 -0.1036 2.4424 21 6 2.0912 -0.1937 3.6276 22 8 3.1440 -0.7903 3.7073 23 6 1.4905 0.4422 4.8547 24 6 1.2578 1.9161 4.5735 25 6 0.4775 2.5697 5.7168 26 6 1.4586 3.0021 6.7853 27 6 2.0464 2.1202 7.5300 28 6 1.7601 0.6459 7.3408 29 6 2.4116 0.1860 6.0345 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9173 -1.1206 -1.0287 34 1 1.0871 0.6161 -2.5525 35 1 2.7588 1.0460 -2.1183 36 1 2.5044 1.0615 -4.8011 37 1 3.1310 1.8424 -7.9850 38 1 1.9988 -2.7094 2.0779 39 1 0.5489 -2.2723 1.1422 40 1 2.0698 -2.6550 0.3004 41 1 0.6117 0.3702 2.3793 42 1 0.5282 -0.0288 5.0547 43 1 2.2198 2.4167 4.4632 44 1 0.6919 2.0197 3.6477 45 1 -0.2274 1.8518 6.1362 46 1 -0.0618 3.4395 5.3417 47 1 1.6693 4.0518 6.9279 48 1 2.7445 2.4386 8.2900 49 1 0.6832 0.4860 7.2887 50 1 2.1764 0.0823 8.1756 51 1 2.6263 -0.8807 6.0972 52 1 3.3437 0.7317 5.8871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734000217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:32 Heat of formation + Delta-G solvation = -72.585104 kcal Electronic energy + Delta-G solvation = -29222.918043 eV Core-core repulsion = 25221.838398 eV Total energy + Delta-G solvation = -4001.079644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67377 -38.81545 -38.18768 -37.19852 -34.50587 -33.82020 -33.15834 -32.22353 -31.27079 -30.70275 -29.13911 -26.61152 -26.35120 -24.63038 -24.33269 -23.56453 -21.78754 -20.19596 -19.79029 -19.31137 -18.41679 -17.97274 -17.67263 -16.66073 -16.36037 -15.91185 -15.57264 -15.36646 -14.91272 -14.78755 -14.45229 -14.24050 -14.01560 -13.84711 -13.68016 -13.41111 -13.33233 -13.15245 -12.77965 -12.59166 -12.42027 -12.20308 -12.10935 -12.01823 -11.81087 -11.66850 -11.58578 -11.42942 -11.17169 -11.07398 -11.03437 -10.90332 -10.72948 -10.67967 -10.44117 -10.21305 -9.93316 -9.49983 -9.40830 -9.21134 -8.46845 -8.11879 -7.96241 -6.41693 -3.82497 1.91658 2.46706 2.92446 3.20444 3.26052 3.30669 3.90638 4.09120 4.17327 4.28034 4.36314 4.36851 4.58884 4.62902 4.71070 4.77143 4.86209 4.96014 5.03371 5.12541 5.14375 5.15571 5.23924 5.25376 5.34165 5.40614 5.44483 5.53783 5.56668 5.58678 5.68274 5.74859 5.76675 5.79986 5.82347 5.93337 5.94431 5.97199 6.00269 6.17247 6.27498 6.28470 6.39177 6.44422 6.52802 7.15692 7.32424 7.55160 7.59830 8.05906 8.06112 8.61136 9.17822 9.54091 10.05552 10.75974 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.001767 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.075593 B =15840.505684 C =16250.270894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.047 0.953 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.141 3.859 18 H 0.086 0.914 19 C -0.157 4.157 20 N -0.723 5.723 21 C 0.513 3.487 22 O -0.538 6.538 23 C -0.102 4.102 24 C -0.107 4.107 25 C -0.090 4.090 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.092 4.092 29 C -0.095 4.095 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.351 0.649 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.398 0.602 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 5.177 27.718 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 H 0.064 0.936 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.544 5.544 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.036 3.964 18 H 0.104 0.896 19 C -0.215 4.215 20 N -0.377 5.377 21 C 0.299 3.701 22 O -0.414 6.414 23 C -0.124 4.124 24 C -0.145 4.145 25 C -0.127 4.127 26 C -0.179 4.179 27 C -0.174 4.174 28 C -0.130 4.130 29 C -0.133 4.133 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.235 0.765 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.522 3.822 27.459 28.726 hybrid contribution 0.529 1.168 -0.718 1.469 sum -6.993 4.990 26.741 28.087 Atomic orbital electron populations 1.21879 0.94507 1.02914 1.00839 1.21714 0.96494 0.95884 0.89330 0.93552 1.60190 1.34951 1.31696 1.02203 1.21731 1.01311 0.93887 0.91262 1.19779 0.84986 0.88205 0.84412 1.90526 1.55264 1.16113 1.84727 1.41850 1.57773 1.12406 1.07982 1.19657 1.40027 0.96429 0.86810 0.87955 1.25263 0.97651 0.95788 0.99242 1.69603 1.48642 1.08846 1.27272 0.85911 0.79431 0.78829 0.80010 1.19878 1.20991 1.19922 1.21071 0.98652 0.93431 0.83253 0.89642 1.22113 1.01990 0.94694 1.02681 1.46227 1.25971 1.57166 1.08337 1.20759 0.84834 0.79838 0.84641 1.90710 1.22679 1.42547 1.85465 1.21037 1.00904 0.96826 0.93610 1.21317 1.01570 0.93309 0.98315 1.20815 0.96814 1.00591 0.94510 1.22545 0.98916 0.99110 0.97371 1.22593 1.00004 0.95197 0.99558 1.20851 1.00964 0.93492 0.97664 1.21101 0.98231 1.02418 0.91581 0.92049 0.91160 0.93324 0.82820 0.89557 0.93845 0.77483 0.91833 0.92912 0.92205 0.90050 0.76522 0.88819 0.91019 0.91239 0.90795 0.91008 0.87524 0.87547 0.90981 0.91138 0.90620 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.93 37.16 0.33 -1.10 16 2 C 0.08 0.89 2.66 -67.72 -0.18 0.71 16 3 H 0.05 0.53 7.80 -51.93 -0.41 0.13 16 4 N -0.66 -10.15 5.14 -108.00 -0.55 -10.70 16 5 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 6 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 7 O -0.58 -15.72 15.78 5.55 0.09 -15.64 16 8 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 9 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 13 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.14 1.60 2.30 -67.93 -0.16 1.44 16 18 H 0.09 1.14 7.58 -51.92 -0.39 0.75 16 19 C -0.16 -1.87 9.02 37.16 0.33 -1.54 16 20 N -0.72 -6.61 4.79 -53.81 -0.26 -6.87 16 21 C 0.51 5.40 7.10 -10.98 -0.08 5.32 16 22 O -0.54 -7.91 15.42 5.56 0.09 -7.82 16 23 C -0.10 -0.74 2.06 -92.94 -0.19 -0.93 16 24 C -0.11 -0.65 4.87 -27.28 -0.13 -0.78 16 25 C -0.09 -0.46 5.62 -27.51 -0.15 -0.62 16 26 C -0.16 -0.97 9.34 -35.29 -0.33 -1.30 16 27 C -0.16 -0.97 9.34 -35.29 -0.33 -1.30 16 28 C -0.09 -0.56 5.62 -27.53 -0.15 -0.72 16 29 C -0.10 -0.76 4.31 -27.29 -0.12 -0.87 16 30 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 31 H 0.07 0.76 6.56 -51.93 -0.34 0.42 16 32 H 0.05 0.35 6.29 -51.93 -0.33 0.02 16 33 H 0.35 5.78 7.62 -39.29 -0.30 5.48 16 34 H 0.09 1.36 7.44 -51.93 -0.39 0.98 16 35 H 0.04 0.68 8.06 -51.93 -0.42 0.27 16 36 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 40 H 0.08 1.10 7.17 -51.93 -0.37 0.72 16 41 H 0.40 2.66 5.58 -40.82 -0.23 2.44 16 42 H 0.09 0.53 7.89 -51.93 -0.41 0.13 16 43 H 0.07 0.53 7.86 -51.93 -0.41 0.13 16 44 H 0.07 0.34 6.99 -51.93 -0.36 -0.02 16 45 H 0.07 0.34 6.68 -51.93 -0.35 0.00 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.11 0.57 8.06 -52.48 -0.42 0.15 16 48 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.07 0.38 6.68 -51.93 -0.35 0.04 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 0.68 7.77 -51.93 -0.40 0.28 16 52 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -32.61 404.19 -8.95 -41.56 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -8.53 Total: 14.01 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.51 Total: 1.37 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.15 Total: -55.67 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.61 -8.95 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734000217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.023 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds