Wall clock time and date at job start Tue Mar 31 2020 20:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47513 * 2 1 4 4 N 1.46899 * 109.47047 * 239.99559 * 2 1 3 5 5 C 1.46898 * 111.00135 * 85.00259 * 4 2 1 6 6 C 1.50695 * 109.47429 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00043 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00272 * 180.02562 * 6 5 4 9 9 C 1.37090 * 120.00233 * 179.97438 * 8 6 5 10 10 H 1.08005 * 120.00384 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00240 * 179.97438 * 9 8 6 12 12 N 1.31416 * 120.00019 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00415 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47136 * 59.99751 * 13 11 9 15 15 H 1.48497 * 109.47543 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47164 * 300.00223 * 13 11 9 17 17 C 1.52999 * 109.46859 * 119.99927 * 2 1 3 18 18 H 1.09007 * 109.47200 * 184.99932 * 17 2 1 19 19 C 1.52995 * 109.47524 * 64.99941 * 17 2 1 20 20 N 1.46499 * 109.47155 * 304.99797 * 17 2 1 21 21 C 1.34784 * 119.99971 * 205.00183 * 20 17 2 22 22 O 1.21274 * 119.99897 * 359.72827 * 21 20 17 23 23 C 1.50695 * 119.99635 * 179.97438 * 21 20 17 24 24 C 1.51847 * 108.65336 * 304.09111 * 23 21 20 25 25 C 1.53081 * 110.74742 * 172.39458 * 24 23 21 26 26 C 1.51371 * 108.59152 * 85.74549 * 25 24 23 27 27 C 1.29525 * 120.36047 * 288.07934 * 26 25 24 28 28 C 1.51370 * 120.36287 * 0.02562 * 27 26 25 29 29 C 1.51852 * 108.64718 * 180.02562 * 23 21 20 30 30 H 1.09006 * 109.47277 * 60.00292 * 1 2 3 31 31 H 1.09002 * 109.47613 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47386 * 300.00065 * 1 2 3 33 33 H 1.00903 * 111.00213 * 208.95477 * 4 2 1 34 34 H 1.09001 * 109.46920 * 300.00103 * 5 4 2 35 35 H 1.09000 * 109.47248 * 59.99459 * 5 4 2 36 36 H 0.97002 * 120.00026 * 359.97438 * 8 6 5 37 37 H 0.96992 * 119.99884 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.47831 * 179.97438 * 19 17 2 39 39 H 1.08996 * 109.47227 * 299.99947 * 19 17 2 40 40 H 1.09005 * 109.47314 * 59.99924 * 19 17 2 41 41 H 0.96999 * 119.99984 * 25.00030 * 20 17 2 42 42 H 1.08995 * 108.60517 * 61.98717 * 23 21 20 43 43 H 1.09006 * 109.22212 * 292.72728 * 24 23 21 44 44 H 1.08995 * 109.21861 * 52.07513 * 24 23 21 45 45 H 1.09002 * 109.61964 * 326.01631 * 25 24 23 46 46 H 1.08992 * 109.62520 * 205.47869 * 25 24 23 47 47 H 1.08005 * 119.81839 * 108.10700 * 26 25 24 48 48 H 1.08002 * 119.81547 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.61456 * 312.16694 * 28 27 26 50 50 H 1.08999 * 109.61526 * 191.63416 * 28 27 26 51 51 H 1.08999 * 109.22423 * 307.92754 * 29 23 21 52 52 H 1.09003 * 109.21793 * 67.32176 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5873 -0.5221 -3.5560 7 8 2.8676 -1.6990 -3.4701 8 7 2.7282 0.1201 -4.7325 9 6 3.1880 -0.5570 -5.8323 10 1 3.4369 -1.6052 -5.7561 11 6 3.3328 0.1050 -7.0454 12 7 3.0295 1.3803 -7.1383 13 14 3.9586 -0.8178 -8.5442 14 1 3.0366 -1.9395 -8.8554 15 1 4.0227 0.1073 -9.7040 16 1 5.3146 -1.3548 -8.2644 17 6 2.0399 -0.7212 1.2493 18 1 3.1263 -0.6444 1.2952 19 6 1.6351 -2.1954 1.1881 20 7 1.4558 -0.1036 2.4424 21 6 2.0912 -0.1937 3.6276 22 8 3.1440 -0.7903 3.7073 23 6 1.4905 0.4422 4.8547 24 6 1.2578 1.9161 4.5735 25 6 0.4775 2.5697 5.7168 26 6 1.4586 3.0021 6.7853 27 6 2.0464 2.1202 7.5300 28 6 1.7601 0.6459 7.3408 29 6 2.4116 0.1860 6.0345 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9173 -1.1206 -1.0287 34 1 1.0871 0.6161 -2.5525 35 1 2.7588 1.0460 -2.1183 36 1 2.5044 1.0615 -4.8011 37 1 3.1310 1.8424 -7.9850 38 1 1.9988 -2.7094 2.0779 39 1 0.5489 -2.2723 1.1422 40 1 2.0698 -2.6550 0.3004 41 1 0.6117 0.3702 2.3793 42 1 0.5282 -0.0288 5.0547 43 1 2.2198 2.4167 4.4632 44 1 0.6919 2.0197 3.6477 45 1 -0.2274 1.8518 6.1362 46 1 -0.0618 3.4395 5.3417 47 1 1.6693 4.0518 6.9279 48 1 2.7445 2.4386 8.2900 49 1 0.6832 0.4860 7.2887 50 1 2.1764 0.0823 8.1756 51 1 2.6263 -0.8807 6.0972 52 1 3.3437 0.7317 5.8871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734000217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:31 Heat of formation + Delta-G solvation = -95.148259 kcal Electronic energy + Delta-G solvation = -29223.896455 eV Core-core repulsion = 25221.838398 eV Total energy + Delta-G solvation = -4002.058056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47833 -40.23876 -39.23486 -38.25475 -36.06157 -35.36036 -33.82685 -33.26346 -32.73946 -31.74490 -30.07144 -28.14847 -26.95992 -26.13259 -24.98777 -24.62389 -22.53554 -21.12655 -20.92309 -20.72529 -19.92897 -18.87553 -18.59405 -17.65509 -17.34882 -17.12580 -16.70128 -16.61055 -16.24755 -15.80252 -15.65816 -15.54308 -15.20542 -14.97739 -14.58578 -14.32101 -14.24712 -13.95665 -13.84537 -13.52562 -13.50298 -13.41991 -13.19740 -13.08628 -13.00650 -12.84119 -12.62259 -12.50351 -12.42758 -12.13707 -12.12603 -11.92193 -11.74010 -11.67807 -11.50172 -11.48951 -11.20680 -10.78179 -10.35371 -10.12698 -10.01549 -9.86257 -9.37821 -8.46656 -5.95271 1.39693 1.41639 1.46072 1.52417 1.64503 2.05094 2.08615 2.30244 2.96493 3.20599 3.47941 3.61521 3.65063 3.72097 3.86061 3.94888 4.13930 4.19655 4.22703 4.29218 4.30928 4.44692 4.46141 4.49182 4.54009 4.58725 4.63814 4.65788 4.72833 4.81879 4.84560 4.91984 4.94404 5.00683 5.04510 5.09454 5.18973 5.25716 5.28585 5.33278 5.40797 5.42210 5.51027 5.51543 5.84557 5.88367 6.08924 6.09198 6.32343 6.55920 6.60292 7.12666 7.27129 7.56340 8.11862 8.70452 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.001767 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.075593 B =15840.505684 C =16250.270894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.058 0.942 4 N -0.669 5.669 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.148 3.852 18 H 0.061 0.939 19 C -0.149 4.149 20 N -0.708 5.708 21 C 0.510 3.490 22 O -0.586 6.586 23 C -0.094 4.094 24 C -0.103 4.103 25 C -0.087 4.087 26 C -0.165 4.165 27 C -0.169 4.169 28 C -0.086 4.086 29 C -0.093 4.093 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.342 0.658 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.414 0.586 42 H 0.120 0.880 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 6.685 28.414 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.076 0.924 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.194 1.194 16 H -0.198 1.198 17 C 0.043 3.957 18 H 0.079 0.921 19 C -0.207 4.207 20 N -0.362 5.362 21 C 0.298 3.702 22 O -0.466 6.466 23 C -0.115 4.115 24 C -0.141 4.141 25 C -0.124 4.124 26 C -0.183 4.183 27 C -0.187 4.187 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.254 0.746 42 H 0.138 0.862 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.129 0.871 48 H 0.125 0.875 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.614 5.380 28.169 30.247 hybrid contribution 1.183 0.691 -0.869 1.622 sum -8.431 6.071 27.300 29.210 Atomic orbital electron populations 1.21896 0.92654 1.02931 1.02472 1.21765 0.97703 0.95827 0.87499 0.92421 1.60231 1.34547 1.32121 1.03294 1.21583 1.02455 0.93568 0.88996 1.20879 0.83220 0.87995 0.85430 1.90497 1.56593 1.18244 1.85583 1.41916 1.58308 1.12567 1.08223 1.19627 1.42237 0.95958 0.88622 0.90377 1.26028 0.97235 0.96641 1.01340 1.69661 1.48552 1.09625 1.28197 0.84999 0.78667 0.77854 0.76876 1.19713 1.19427 1.19841 1.20809 0.97451 0.93270 0.84191 0.92063 1.22017 1.02594 0.94928 1.01183 1.46044 1.26304 1.56632 1.07262 1.21409 0.84171 0.79027 0.85624 1.90697 1.24936 1.44738 1.86181 1.21066 1.01365 0.97733 0.91331 1.21311 1.01214 0.91906 0.99693 1.20837 0.96566 1.01309 0.93728 1.22750 0.98854 0.99359 0.97330 1.22684 1.00503 0.95343 1.00133 1.20805 1.01589 0.93446 0.96514 1.21046 0.97837 1.01075 0.93163 0.92349 0.91964 0.89801 0.83881 0.87378 0.91770 0.76948 0.91290 0.93946 0.90832 0.92019 0.74615 0.86240 0.92741 0.89411 0.89670 0.89660 0.87131 0.87477 0.89570 0.90821 0.92262 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.93 71.98 0.64 -1.74 16 2 C 0.08 1.75 2.66 44.91 0.12 1.86 16 3 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 4 N -0.67 -20.21 5.14 -495.61 -2.55 -22.75 16 5 C 0.07 2.20 5.96 85.56 0.51 2.71 16 6 C 0.44 20.70 7.82 87.66 0.69 21.38 16 7 O -0.62 -34.58 15.78 -3.06 -0.05 -34.63 16 8 N -0.57 -29.33 5.29 -306.99 -1.62 -30.95 16 9 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 13 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C 0.15 3.26 2.30 44.99 0.10 3.36 16 18 H 0.06 1.68 7.58 -2.38 -0.02 1.66 16 19 C -0.15 -3.54 9.02 71.98 0.65 -2.89 16 20 N -0.71 -11.55 4.79 -442.54 -2.12 -13.67 16 21 C 0.51 10.27 7.10 87.65 0.62 10.89 16 22 O -0.59 -17.71 15.42 -3.01 -0.05 -17.75 16 23 C -0.09 -1.19 2.06 -12.30 -0.03 -1.22 16 24 C -0.10 -0.98 4.87 30.24 0.15 -0.84 16 25 C -0.09 -0.63 5.62 30.09 0.17 -0.46 16 26 C -0.16 -1.67 9.34 27.37 0.26 -1.41 16 27 C -0.17 -1.90 9.34 27.37 0.26 -1.65 16 28 C -0.09 -0.93 5.62 30.08 0.17 -0.76 16 29 C -0.09 -1.44 4.31 30.23 0.13 -1.31 16 30 H 0.06 1.06 7.45 -2.38 -0.02 1.04 16 31 H 0.06 1.18 6.56 -2.39 -0.02 1.16 16 32 H 0.08 0.81 6.29 -2.39 -0.02 0.79 16 33 H 0.34 11.45 7.62 -89.69 -0.68 10.77 16 34 H 0.11 3.16 7.44 -2.39 -0.02 3.14 16 35 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 36 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.52 6.56 -2.39 -0.02 1.51 16 40 H 0.06 1.72 7.17 -2.38 -0.02 1.70 16 41 H 0.41 4.02 5.58 -92.71 -0.52 3.50 16 42 H 0.12 0.95 7.89 -2.39 -0.02 0.94 16 43 H 0.05 0.73 7.86 -2.38 -0.02 0.71 16 44 H 0.09 0.52 6.99 -2.39 -0.02 0.51 16 45 H 0.08 0.46 6.68 -2.39 -0.02 0.44 16 46 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 49 H 0.09 0.69 6.68 -2.39 -0.02 0.67 16 50 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.06 1.10 7.77 -2.39 -0.02 1.08 16 52 H 0.05 0.95 7.85 -2.39 -0.02 0.94 16 Total: -1.00 -73.12 404.19 0.66 -72.47 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.99 Total: 41.95 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.72 Total: 9.45 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -6.01 Total: -116.61 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.09 Total: -52.38 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.12 0.66 -72.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734000217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.682 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds