Wall clock time and date at job start Tue Mar 31 2020 20:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47103 * 119.99960 * 2 1 4 4 O 1.21612 * 119.99827 * 237.93063 * 3 2 1 5 5 N 1.34773 * 120.00194 * 57.93399 * 3 2 1 6 6 C 1.46500 * 119.99603 * 4.76714 * 5 3 2 7 7 C 1.46497 * 120.00285 * 184.76823 * 5 3 2 8 8 C 1.53004 * 109.46823 * 270.00080 * 7 5 3 9 9 H 1.08990 * 109.47311 * 65.00127 * 8 7 5 10 10 C 1.52998 * 109.46859 * 185.00018 * 8 7 5 11 11 N 1.46899 * 109.46944 * 304.99734 * 8 7 5 12 12 C 1.46900 * 111.00170 * 155.00451 * 11 8 7 13 13 C 1.50698 * 109.47428 * 179.97438 * 12 11 8 14 14 O 1.21294 * 119.99667 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99866 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99680 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00457 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00121 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00282 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99660 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47341 * 90.00003 * 20 18 16 22 22 H 1.48505 * 109.47176 * 210.00424 * 20 18 16 23 23 H 1.48506 * 109.47275 * 330.00058 * 20 18 16 24 24 C 1.32995 * 120.00005 * 180.02562 * 2 1 3 25 25 C 1.51453 * 126.34063 * 179.69140 * 24 2 1 26 26 C 1.54277 * 106.84872 * 180.23956 * 25 24 2 27 27 C 1.54976 * 103.66244 * 23.48179 * 26 25 24 28 28 C 1.51842 * 126.34080 * 359.97438 * 24 2 1 29 29 H 1.08997 * 109.47279 * 87.79660 * 1 2 3 30 30 H 1.09003 * 109.47092 * 207.79310 * 1 2 3 31 31 H 1.08995 * 109.47195 * 327.79387 * 1 2 3 32 32 H 1.09006 * 109.46832 * 264.82913 * 6 5 3 33 33 H 1.08995 * 109.47396 * 24.83234 * 6 5 3 34 34 H 1.09000 * 109.47240 * 144.83577 * 6 5 3 35 35 H 1.08996 * 109.47239 * 149.99666 * 7 5 3 36 36 H 1.09000 * 109.47030 * 29.99522 * 7 5 3 37 37 H 1.09000 * 109.47552 * 179.97438 * 10 8 7 38 38 H 1.09010 * 109.47298 * 299.99870 * 10 8 7 39 39 H 1.08998 * 109.47658 * 59.99788 * 10 8 7 40 40 H 1.00908 * 110.99931 * 278.95360 * 11 8 7 41 41 H 1.09004 * 109.46997 * 300.00301 * 12 11 8 42 42 H 1.09006 * 109.46840 * 59.99427 * 12 11 8 43 43 H 0.97000 * 120.00261 * 359.97438 * 15 13 12 44 44 H 0.97001 * 119.99925 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.97816 * 299.72000 * 25 24 2 46 46 H 1.08996 * 109.98473 * 61.02340 * 25 24 2 47 47 H 1.09000 * 110.79341 * 264.85008 * 26 25 24 48 48 H 1.09003 * 110.42749 * 141.93165 * 26 25 24 49 49 H 1.09013 * 110.83116 * 204.49202 * 27 26 25 50 50 H 1.08994 * 110.83532 * 80.91101 * 27 26 25 51 51 H 1.08998 * 110.44692 * 274.92772 * 28 24 2 52 52 H 1.08998 * 110.44343 * 37.33384 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.0308 1.5209 -0.8925 5 7 2.0428 2.1674 0.9891 6 6 1.1735 1.8278 2.1183 7 6 2.6950 3.4781 0.9350 8 6 4.0565 3.3992 1.6285 9 1 4.7101 2.7287 1.0707 10 6 4.6829 4.7940 1.6823 11 7 3.8813 2.8881 2.9945 12 6 5.1116 2.2480 3.4790 13 6 4.8942 1.7378 4.8802 14 8 3.8202 1.8926 5.4222 15 7 5.8932 1.1095 5.5311 16 6 5.6956 0.6458 6.8060 17 1 4.7393 0.7836 7.2887 18 6 6.7257 -0.0016 7.4774 19 7 6.5362 -0.4465 8.6992 20 14 8.3799 -0.2393 6.6429 21 1 9.2541 0.9247 6.9361 22 1 9.0184 -1.4790 7.1536 23 1 8.1824 -0.3527 5.1754 24 6 2.1720 -1.1518 -0.0005 25 6 3.6772 -1.3190 -0.0072 26 6 3.9585 -2.8359 -0.0112 27 6 2.6647 -3.4466 -0.6070 28 6 1.5626 -2.5426 -0.0006 29 1 -0.3634 0.0395 -1.0269 30 1 -0.3633 -0.9091 0.4792 31 1 -0.3633 0.8695 0.5477 32 1 0.1688 2.2066 1.9302 33 1 1.1374 0.7448 2.2363 34 1 1.5674 2.2795 3.0288 35 1 2.0716 4.2153 1.4409 36 1 2.8337 3.7722 -0.1054 37 1 5.6527 4.7381 2.1768 38 1 4.8129 5.1734 0.6687 39 1 4.0294 5.4647 2.2401 40 1 3.5853 3.6223 3.6202 41 1 5.3698 1.4153 2.8247 42 1 5.9236 2.9752 3.4793 43 1 6.7520 0.9853 5.0975 44 1 7.2554 -0.8980 9.1680 45 1 4.0993 -0.8574 -0.8999 46 1 4.1064 -0.8650 0.8859 47 1 4.1233 -3.2016 1.0023 48 1 4.8160 -3.0621 -0.6451 49 1 2.5394 -4.4802 -0.2839 50 1 2.6684 -3.3771 -1.6947 51 1 1.3299 -2.8564 1.0170 52 1 0.6658 -2.5653 -0.6196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734322927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:44 Heat of formation + Delta-G solvation = -62.619905 kcal Electronic energy + Delta-G solvation = -30620.147757 eV Core-core repulsion = 26619.500236 eV Total energy + Delta-G solvation = -4000.647521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.15481 -38.62417 -38.05872 -36.77919 -34.90135 -33.97184 -33.39574 -31.69794 -30.90977 -29.10899 -27.89722 -27.12399 -26.60510 -26.12545 -23.99258 -23.46326 -21.28283 -20.79082 -20.03226 -19.37112 -18.35360 -17.77485 -16.55386 -16.31158 -15.95800 -15.84277 -15.63392 -15.07829 -14.86335 -14.63542 -14.48989 -13.97716 -13.69735 -13.45418 -13.37252 -13.20280 -13.10679 -12.81485 -12.60222 -12.55937 -12.41269 -12.35663 -12.16106 -12.06806 -11.87467 -11.77998 -11.68888 -11.39602 -11.28977 -11.20065 -11.16854 -11.10947 -10.97073 -10.74888 -10.60584 -9.98999 -9.64038 -9.58147 -8.76683 -8.73627 -8.45479 -8.19500 -8.00022 -6.32545 -3.83746 1.62251 2.85839 3.02061 3.05831 3.14154 3.24472 3.73699 4.08354 4.13480 4.26736 4.53862 4.70502 4.86174 4.88241 4.88873 4.97543 5.07699 5.18400 5.19620 5.26948 5.30305 5.38281 5.40586 5.46264 5.50464 5.58554 5.59984 5.62624 5.64611 5.67004 5.70520 5.74110 5.76403 5.85360 5.88226 5.90247 5.94612 5.98532 6.00339 6.06250 6.18184 6.24147 6.33983 6.60518 6.66573 7.10633 7.52680 7.57171 7.61258 8.13163 8.28741 8.58564 8.93634 9.41475 9.81643 10.80571 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.003609 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.214837 B = 7757.282243 C = 9448.486795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.173 4.173 3 C 0.562 3.438 4 O -0.550 6.550 5 N -0.589 5.589 6 C 0.084 3.916 7 C 0.131 3.869 8 C 0.065 3.935 9 H 0.081 0.919 10 C -0.181 4.181 11 N -0.657 5.657 12 C 0.050 3.950 13 C 0.452 3.548 14 O -0.565 6.565 15 N -0.591 5.591 16 C -0.304 4.304 17 H 0.119 0.881 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.878 3.122 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.270 1.270 24 C -0.061 4.061 25 C -0.101 4.101 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.095 4.095 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.348 0.652 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.085 0.915 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 1.508 -19.754 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.176 4.176 3 C 0.351 3.649 4 O -0.429 6.429 5 N -0.319 5.319 6 C -0.059 4.059 7 C 0.007 3.993 8 C -0.047 4.047 9 H 0.099 0.901 10 C -0.240 4.240 11 N -0.289 5.289 12 C -0.083 4.083 13 C 0.238 3.762 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.704 3.296 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.062 4.062 25 C -0.138 4.138 26 C -0.162 4.162 27 C -0.160 4.160 28 C -0.132 4.132 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.168 0.832 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.103 0.897 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.721 1.045 -19.827 21.685 hybrid contribution 2.100 0.499 -0.157 2.164 sum -6.621 1.543 -19.983 21.108 Atomic orbital electron populations 1.20750 0.90279 1.03085 1.02187 1.20593 0.96182 0.91891 1.08968 1.18400 0.81410 0.83728 0.81373 1.90748 1.36613 1.77949 1.37631 1.47502 1.47430 1.15060 1.21955 1.21907 0.92158 1.01921 0.89879 1.21447 0.92874 0.84188 1.00780 1.22034 0.96827 0.94781 0.91033 0.90099 1.22456 1.01403 0.97795 1.02392 1.60184 1.31271 1.35424 1.02049 1.21702 0.91684 0.98942 0.95955 1.19708 0.85383 0.83876 0.87276 1.90546 1.25333 1.60347 1.68511 1.42218 1.12508 1.52852 1.15469 1.19418 1.02070 1.33547 0.88258 0.86294 1.25025 0.98192 0.97127 0.95730 1.69619 1.33407 1.38181 1.10941 0.86697 0.84403 0.78985 0.79473 1.19662 1.20141 1.19505 1.22470 0.96015 0.93519 0.94233 1.21265 0.92653 0.96796 1.03092 1.22380 0.97705 0.94699 1.01430 1.22501 0.94582 0.98664 1.00233 1.21504 0.98315 0.91580 1.01788 0.91609 0.91243 0.91209 0.93765 0.91208 0.88684 0.90616 0.89975 0.92357 0.91999 0.92185 0.83188 0.89930 0.93896 0.79750 0.91625 0.89816 0.90641 0.91074 0.91373 0.91103 0.91302 0.89652 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.04 36.00 0.33 -0.66 16 2 C -0.17 -2.13 4.37 -102.85 -0.45 -2.58 16 3 C 0.56 8.04 6.62 -12.67 -0.08 7.96 16 4 O -0.55 -9.40 16.03 5.27 0.08 -9.31 16 5 N -0.59 -7.48 2.73 -182.98 -0.50 -7.98 16 6 C 0.08 0.99 8.72 59.85 0.52 1.52 16 7 C 0.13 1.50 5.14 -4.04 -0.02 1.48 16 8 C 0.06 0.79 2.89 -67.71 -0.20 0.59 16 9 H 0.08 1.14 7.80 -51.93 -0.41 0.73 16 10 C -0.18 -1.82 9.16 37.16 0.34 -1.48 16 11 N -0.66 -9.58 4.05 -107.99 -0.44 -10.02 16 12 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 13 C 0.45 10.02 7.82 -10.99 -0.09 9.94 16 14 O -0.57 -14.55 15.78 5.55 0.09 -14.46 16 15 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 16 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 17 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 19 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 20 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 24 C -0.06 -0.73 6.11 -100.23 -0.61 -1.35 16 25 C -0.10 -1.27 5.68 -26.84 -0.15 -1.43 16 26 C -0.12 -1.29 6.87 -25.02 -0.17 -1.46 16 27 C -0.12 -1.08 6.94 -24.68 -0.17 -1.25 16 28 C -0.09 -0.89 5.65 -26.31 -0.15 -1.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 7.11 -51.93 -0.37 0.19 16 31 H 0.07 0.61 5.89 -51.93 -0.31 0.30 16 32 H 0.04 0.42 7.34 -51.93 -0.38 0.04 16 33 H 0.07 0.86 6.48 -51.93 -0.34 0.52 16 34 H 0.09 1.29 6.80 -51.93 -0.35 0.94 16 35 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.08 0.96 7.49 -51.93 -0.39 0.57 16 37 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 40 H 0.35 5.17 8.17 -39.29 -0.32 4.85 16 41 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 42 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 43 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.08 1.14 7.79 -51.93 -0.40 0.74 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.07 0.60 7.64 -51.93 -0.40 0.21 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -33.01 410.99 -8.62 -41.63 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -8.87 Total: 14.73 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.18 Total: 3.40 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.22 Total: -56.88 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.01 -8.62 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734322927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.990 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds