Wall clock time and date at job start Tue Mar 31 2020 20:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47103 * 119.99960 * 2 1 4 4 O 1.21612 * 119.99827 * 237.93063 * 3 2 1 5 5 N 1.34773 * 120.00194 * 57.93399 * 3 2 1 6 6 C 1.46500 * 119.99603 * 4.76714 * 5 3 2 7 7 C 1.46497 * 120.00285 * 184.76823 * 5 3 2 8 8 C 1.53004 * 109.46823 * 270.00080 * 7 5 3 9 9 H 1.08990 * 109.47311 * 65.00127 * 8 7 5 10 10 C 1.52998 * 109.46859 * 185.00018 * 8 7 5 11 11 N 1.46899 * 109.46944 * 304.99734 * 8 7 5 12 12 C 1.46900 * 111.00170 * 155.00451 * 11 8 7 13 13 C 1.50698 * 109.47428 * 179.97438 * 12 11 8 14 14 O 1.21294 * 119.99667 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99866 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99680 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00457 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00121 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00282 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99660 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47341 * 90.00003 * 20 18 16 22 22 H 1.48505 * 109.47176 * 210.00424 * 20 18 16 23 23 H 1.48506 * 109.47275 * 330.00058 * 20 18 16 24 24 C 1.32995 * 120.00005 * 180.02562 * 2 1 3 25 25 C 1.51453 * 126.34063 * 179.69140 * 24 2 1 26 26 C 1.54277 * 106.84872 * 180.23956 * 25 24 2 27 27 C 1.54976 * 103.66244 * 23.48179 * 26 25 24 28 28 C 1.51842 * 126.34080 * 359.97438 * 24 2 1 29 29 H 1.08997 * 109.47279 * 87.79660 * 1 2 3 30 30 H 1.09003 * 109.47092 * 207.79310 * 1 2 3 31 31 H 1.08995 * 109.47195 * 327.79387 * 1 2 3 32 32 H 1.09006 * 109.46832 * 264.82913 * 6 5 3 33 33 H 1.08995 * 109.47396 * 24.83234 * 6 5 3 34 34 H 1.09000 * 109.47240 * 144.83577 * 6 5 3 35 35 H 1.08996 * 109.47239 * 149.99666 * 7 5 3 36 36 H 1.09000 * 109.47030 * 29.99522 * 7 5 3 37 37 H 1.09000 * 109.47552 * 179.97438 * 10 8 7 38 38 H 1.09010 * 109.47298 * 299.99870 * 10 8 7 39 39 H 1.08998 * 109.47658 * 59.99788 * 10 8 7 40 40 H 1.00908 * 110.99931 * 278.95360 * 11 8 7 41 41 H 1.09004 * 109.46997 * 300.00301 * 12 11 8 42 42 H 1.09006 * 109.46840 * 59.99427 * 12 11 8 43 43 H 0.97000 * 120.00261 * 359.97438 * 15 13 12 44 44 H 0.97001 * 119.99925 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.97816 * 299.72000 * 25 24 2 46 46 H 1.08996 * 109.98473 * 61.02340 * 25 24 2 47 47 H 1.09000 * 110.79341 * 264.85008 * 26 25 24 48 48 H 1.09003 * 110.42749 * 141.93165 * 26 25 24 49 49 H 1.09013 * 110.83116 * 204.49202 * 27 26 25 50 50 H 1.08994 * 110.83532 * 80.91101 * 27 26 25 51 51 H 1.08998 * 110.44692 * 274.92772 * 28 24 2 52 52 H 1.08998 * 110.44343 * 37.33384 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.0308 1.5209 -0.8925 5 7 2.0428 2.1674 0.9891 6 6 1.1735 1.8278 2.1183 7 6 2.6950 3.4781 0.9350 8 6 4.0565 3.3992 1.6285 9 1 4.7101 2.7287 1.0707 10 6 4.6829 4.7940 1.6823 11 7 3.8813 2.8881 2.9945 12 6 5.1116 2.2480 3.4790 13 6 4.8942 1.7378 4.8802 14 8 3.8202 1.8926 5.4222 15 7 5.8932 1.1095 5.5311 16 6 5.6956 0.6458 6.8060 17 1 4.7393 0.7836 7.2887 18 6 6.7257 -0.0016 7.4774 19 7 6.5362 -0.4465 8.6992 20 14 8.3799 -0.2393 6.6429 21 1 9.2541 0.9247 6.9361 22 1 9.0184 -1.4790 7.1536 23 1 8.1824 -0.3527 5.1754 24 6 2.1720 -1.1518 -0.0005 25 6 3.6772 -1.3190 -0.0072 26 6 3.9585 -2.8359 -0.0112 27 6 2.6647 -3.4466 -0.6070 28 6 1.5626 -2.5426 -0.0006 29 1 -0.3634 0.0395 -1.0269 30 1 -0.3633 -0.9091 0.4792 31 1 -0.3633 0.8695 0.5477 32 1 0.1688 2.2066 1.9302 33 1 1.1374 0.7448 2.2363 34 1 1.5674 2.2795 3.0288 35 1 2.0716 4.2153 1.4409 36 1 2.8337 3.7722 -0.1054 37 1 5.6527 4.7381 2.1768 38 1 4.8129 5.1734 0.6687 39 1 4.0294 5.4647 2.2401 40 1 3.5853 3.6223 3.6202 41 1 5.3698 1.4153 2.8247 42 1 5.9236 2.9752 3.4793 43 1 6.7520 0.9853 5.0975 44 1 7.2554 -0.8980 9.1680 45 1 4.0993 -0.8574 -0.8999 46 1 4.1064 -0.8650 0.8859 47 1 4.1233 -3.2016 1.0023 48 1 4.8160 -3.0621 -0.6451 49 1 2.5394 -4.4802 -0.2839 50 1 2.6684 -3.3771 -1.6947 51 1 1.3299 -2.8564 1.0170 52 1 0.6658 -2.5653 -0.6196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734322927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:42 Heat of formation + Delta-G solvation = -84.599960 kcal Electronic energy + Delta-G solvation = -30621.100883 eV Core-core repulsion = 26619.500236 eV Total energy + Delta-G solvation = -4001.600648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.19702 -40.32442 -39.02656 -37.96883 -36.14470 -35.82365 -34.31346 -33.74991 -32.09637 -29.95041 -28.74077 -28.18162 -27.94608 -27.22066 -25.57573 -24.51256 -22.28805 -21.63724 -21.32973 -20.94872 -20.27072 -18.76359 -17.85497 -17.41628 -17.25961 -17.05174 -16.70340 -16.52980 -16.28303 -15.86247 -15.52091 -15.35584 -14.97888 -14.70959 -14.50300 -14.30291 -14.25748 -14.16585 -13.85128 -13.74292 -13.45379 -13.36072 -13.32232 -13.12950 -12.99304 -12.84841 -12.73357 -12.69428 -12.44846 -12.42381 -12.14029 -12.05409 -12.00512 -11.94119 -11.87852 -11.53272 -11.52469 -10.70808 -10.46213 -10.25333 -9.72835 -9.63887 -9.13253 -8.42369 -6.02316 0.67663 1.28273 1.32058 1.40962 1.80579 1.93845 2.20367 2.25745 2.69826 3.14153 3.39403 3.41259 3.72113 3.81366 3.93033 4.07021 4.08822 4.18000 4.20750 4.28651 4.37373 4.37578 4.43178 4.46483 4.48036 4.57453 4.67807 4.69149 4.77649 4.80831 4.84824 4.86368 4.88623 4.95457 4.96995 4.99133 5.09523 5.12662 5.16309 5.22214 5.24606 5.37632 5.46612 5.51297 5.64462 5.75193 5.88908 6.00844 6.42477 6.50337 6.58450 6.86960 7.21611 7.38606 7.93750 8.75049 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.003609 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.214837 B = 7757.282243 C = 9448.486795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.184 4.184 3 C 0.554 3.446 4 O -0.586 6.586 5 N -0.587 5.587 6 C 0.089 3.911 7 C 0.128 3.872 8 C 0.072 3.928 9 H 0.062 0.938 10 C -0.173 4.173 11 N -0.664 5.664 12 C 0.066 3.934 13 C 0.454 3.546 14 O -0.604 6.604 15 N -0.593 5.593 16 C -0.325 4.325 17 H 0.059 0.941 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.959 3.041 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.238 1.238 24 C -0.074 4.074 25 C -0.101 4.101 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.348 0.652 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.387 0.613 44 H 0.279 0.721 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.089 0.911 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 1.555 -22.025 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.187 4.187 3 C 0.344 3.656 4 O -0.468 6.468 5 N -0.317 5.317 6 C -0.054 4.054 7 C 0.005 3.995 8 C -0.039 4.039 9 H 0.080 0.920 10 C -0.233 4.233 11 N -0.297 5.297 12 C -0.067 4.067 13 C 0.242 3.758 14 O -0.488 6.488 15 N -0.235 5.235 16 C -0.454 4.454 17 H 0.078 0.922 18 C -0.210 4.210 19 N -0.573 5.573 20 Si 0.779 3.221 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.162 1.162 24 C -0.075 4.075 25 C -0.138 4.138 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.128 4.128 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.168 0.832 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.222 0.778 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.107 0.893 50 H 0.092 0.908 51 H 0.107 0.893 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.188 1.116 -22.108 23.602 hybrid contribution 1.818 0.558 0.592 1.991 sum -6.371 1.673 -21.517 22.502 Atomic orbital electron populations 1.20784 0.88003 1.04074 1.02988 1.20837 0.97761 0.91015 1.09108 1.18825 0.81143 0.84507 0.81156 1.90718 1.38233 1.78807 1.39047 1.47608 1.47193 1.15241 1.21621 1.21887 0.93271 1.01439 0.88787 1.21565 0.92843 0.84160 1.00922 1.21975 0.97144 0.95654 0.89110 0.91977 1.22376 1.01200 0.96283 1.03423 1.60154 1.30540 1.35935 1.03062 1.21542 0.93436 0.99938 0.91777 1.20781 0.84215 0.81918 0.88932 1.90528 1.26981 1.61256 1.70050 1.42065 1.13769 1.53455 1.14210 1.19004 1.00459 1.35563 0.90398 0.92239 1.26010 1.02955 0.95834 0.96195 1.69790 1.35379 1.39081 1.13025 0.85450 0.77563 0.79230 0.79838 1.18127 1.19891 1.16174 1.22755 0.95719 0.94923 0.94130 1.21229 0.93409 0.98217 1.00985 1.22382 0.99112 0.93028 1.01589 1.22512 0.93141 0.99328 1.00461 1.21546 0.99013 0.89764 1.02431 0.90743 0.89770 0.90739 0.90958 0.91956 0.90436 0.88453 0.90033 0.92569 0.90696 0.91065 0.83227 0.89066 0.91045 0.77836 0.91158 0.91505 0.93206 0.91479 0.90615 0.89346 0.90752 0.89285 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.04 71.24 0.64 -1.06 16 2 C -0.18 -4.41 4.37 -18.70 -0.08 -4.49 16 3 C 0.55 15.77 6.62 86.57 0.57 16.34 16 4 O -0.59 -20.28 16.03 -4.07 -0.07 -20.35 16 5 N -0.59 -14.50 2.73 -851.07 -2.32 -16.82 16 6 C 0.09 2.02 8.72 127.77 1.11 3.13 16 7 C 0.13 2.78 5.14 86.38 0.44 3.22 16 8 C 0.07 1.66 2.89 44.92 0.13 1.79 16 9 H 0.06 1.70 7.80 -2.39 -0.02 1.68 16 10 C -0.17 -3.08 9.16 71.98 0.66 -2.43 16 11 N -0.66 -18.77 4.05 -495.58 -2.01 -20.78 16 12 C 0.07 2.08 5.96 85.56 0.51 2.59 16 13 C 0.45 20.24 7.82 87.66 0.69 20.92 16 14 O -0.60 -32.08 15.78 -3.07 -0.05 -32.13 16 15 N -0.59 -28.08 5.09 -306.98 -1.56 -29.64 16 16 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 17 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 19 N -0.93 -55.84 13.96 21.66 0.30 -55.54 16 20 Si 0.96 39.22 27.74 68.60 1.90 41.12 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 24 C -0.07 -1.74 6.11 -17.01 -0.10 -1.84 16 25 C -0.10 -2.60 5.68 30.52 0.17 -2.43 16 26 C -0.12 -2.47 6.87 31.70 0.22 -2.26 16 27 C -0.12 -1.85 6.94 31.92 0.22 -1.62 16 28 C -0.09 -1.54 5.65 30.87 0.17 -1.37 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.15 7.11 -2.39 -0.02 1.14 16 31 H 0.07 1.15 5.89 -2.39 -0.01 1.14 16 32 H 0.07 1.24 7.34 -2.38 -0.02 1.22 16 33 H 0.06 1.51 6.48 -2.39 -0.02 1.50 16 34 H 0.08 2.08 6.80 -2.39 -0.02 2.06 16 35 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 36 H 0.08 1.82 7.49 -2.39 -0.02 1.80 16 37 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 38 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 40 H 0.35 10.01 8.17 -89.69 -0.73 9.27 16 41 H 0.09 2.80 8.06 -2.39 -0.02 2.78 16 42 H 0.07 1.91 7.44 -2.38 -0.02 1.90 16 43 H 0.39 15.55 5.76 -92.71 -0.53 15.02 16 44 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.07 1.90 7.79 -2.38 -0.02 1.89 16 46 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.09 1.25 7.64 -2.39 -0.02 1.23 16 Total: -1.00 -76.66 410.99 2.48 -74.18 By element: Atomic # 1 Polarization: 48.03 SS G_CDS: -0.40 Total: 47.63 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.68 Total: 12.32 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -5.59 Total: -122.78 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.11 Total: -52.47 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.12 kcal Total: -76.66 2.48 -74.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734322927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.425 kcal (2) G-P(sol) polarization free energy of solvation -76.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds