Wall clock time and date at job start Tue Mar 31 2020 20:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47013 * 2 1 4 4 N 1.46496 * 109.47440 * 120.00035 * 2 1 3 5 5 C 1.36939 * 120.00287 * 275.00477 * 4 2 1 6 6 H 1.08004 * 119.99658 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00087 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00037 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99814 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46900 * 60.00364 * 9 7 5 11 11 H 1.48502 * 109.46678 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47319 * 300.00354 * 9 7 5 13 13 C 1.52995 * 109.47120 * 240.00325 * 2 1 3 14 14 H 1.08999 * 109.52692 * 299.91465 * 13 2 1 15 15 C 1.53046 * 109.49899 * 59.99850 * 13 2 1 16 16 C 1.53043 * 109.53700 * 181.31793 * 15 13 2 17 17 C 1.53187 * 109.31215 * 298.63008 * 16 15 13 18 18 N 1.46931 * 108.77309 * 54.63979 * 17 16 15 19 19 C 1.34778 * 120.63134 * 126.39186 * 18 17 16 20 20 O 1.21282 * 119.99994 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99743 * 359.97438 * 19 18 17 22 22 C 1.52997 * 109.46914 * 180.02562 * 21 19 18 23 23 N 1.46497 * 109.47362 * 179.97438 * 22 21 19 24 24 C 1.46762 * 124.34946 * 269.72942 * 23 22 21 25 25 C 1.54662 * 105.38261 * 162.84841 * 24 23 22 26 26 C 1.54636 * 101.68379 * 25.76954 * 25 24 23 27 27 C 1.34423 * 124.34868 * 90.02161 * 23 22 21 28 28 O 1.21281 * 124.94255 * 0.43864 * 27 23 22 29 29 C 1.46923 * 118.73730 * 306.38501 * 18 17 16 30 30 H 1.08991 * 109.47481 * 59.99955 * 1 2 3 31 31 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47324 * 299.99274 * 1 2 3 33 33 H 0.97006 * 119.99717 * 94.99912 * 4 2 1 34 34 H 0.97000 * 119.99820 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.45610 * 301.33595 * 15 13 2 36 36 H 1.08997 * 109.46079 * 61.29715 * 15 13 2 37 37 H 1.09000 * 109.49738 * 58.58741 * 16 15 13 38 38 H 1.09003 * 109.49316 * 178.68106 * 16 15 13 39 39 H 1.09001 * 109.58881 * 174.42505 * 17 16 15 40 40 H 1.09004 * 109.59068 * 294.85220 * 17 16 15 41 41 H 1.08997 * 109.46800 * 300.00066 * 21 19 18 42 42 H 1.08999 * 109.47133 * 60.00075 * 21 19 18 43 43 H 1.09002 * 109.47727 * 300.00014 * 22 21 19 44 44 H 1.08999 * 109.47175 * 60.00081 * 22 21 19 45 45 H 1.09001 * 110.24914 * 281.97727 * 24 23 22 46 46 H 1.08996 * 110.25031 * 43.98302 * 24 23 22 47 47 H 1.08996 * 111.20086 * 267.59314 * 25 24 23 48 48 H 1.09008 * 110.82451 * 143.77266 * 25 24 23 49 49 H 1.08998 * 110.48429 * 216.30626 * 26 25 24 50 50 H 1.08998 * 110.48488 * 93.66005 * 26 25 24 51 51 H 1.08996 * 109.59375 * 293.82604 * 29 18 17 52 52 H 1.09006 * 109.58686 * 173.39604 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6114 -0.6621 3.5093 8 7 2.9246 -1.9391 3.4501 9 14 2.7904 0.2699 5.1182 10 1 1.4684 0.8076 5.5285 11 1 3.2982 -0.6489 6.1685 12 1 3.7463 1.3918 4.9368 13 6 2.0400 -0.7212 -1.2492 14 1 1.6784 -1.7494 -1.2494 15 6 1.5301 -0.0001 -2.4992 16 6 2.0125 -0.7397 -3.7492 17 6 3.5441 -0.7367 -3.7803 18 7 4.0438 -1.2969 -2.5172 19 6 4.9184 -2.3223 -2.5192 20 8 5.3238 -2.7756 -1.4699 21 6 5.3927 -2.9056 -3.8254 22 6 6.3715 -4.0483 -3.5480 23 7 6.8321 -4.6157 -4.8177 24 6 6.1736 -5.7261 -5.5158 25 6 6.7180 -5.6815 -6.9627 26 6 8.0876 -4.9925 -6.7610 27 6 7.9154 -4.1900 -5.4901 28 8 8.6485 -3.2934 -5.1301 29 6 3.5719 -0.7179 -1.2520 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2473 -2.3966 4.2422 35 1 0.4404 0.0205 -2.4874 36 1 1.9124 1.0205 -2.5110 37 1 1.6511 -1.7678 -3.7259 38 1 1.6296 -0.2391 -4.6386 39 1 3.8940 -1.3457 -4.6138 40 1 3.9053 0.2854 -3.8949 41 1 4.5383 -3.2871 -4.3843 42 1 5.8924 -2.1321 -4.4086 43 1 7.2260 -3.6672 -2.9888 44 1 5.8714 -4.8216 -2.9650 45 1 6.4297 -6.6741 -5.0426 46 1 5.0930 -5.5836 -5.5161 47 1 6.0729 -5.0856 -7.6084 48 1 6.8429 -6.6885 -7.3610 49 1 8.3108 -4.3342 -7.6005 50 1 8.8746 -5.7366 -6.6386 51 1 3.9353 0.3057 -1.1604 52 1 3.9400 -1.3146 -0.4173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753802087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:55 Heat of formation + Delta-G solvation = -66.254066 kcal Electronic energy + Delta-G solvation = -30102.637903 eV Core-core repulsion = 26101.832793 eV Total energy + Delta-G solvation = -4000.805110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.72091 -40.01130 -37.84489 -36.65761 -35.42052 -34.04402 -32.92870 -31.73896 -30.63571 -29.53811 -28.13594 -27.90160 -25.59700 -24.62917 -23.44609 -22.81646 -22.24706 -21.04226 -19.64104 -19.51409 -18.77556 -17.52389 -17.04717 -16.93877 -16.23875 -16.00415 -15.62875 -15.25595 -14.83784 -14.49233 -14.25348 -14.11132 -13.92922 -13.75838 -13.60416 -13.47884 -13.26485 -13.01068 -12.89365 -12.79336 -12.48499 -12.34956 -12.21710 -11.98760 -11.90082 -11.45675 -11.33103 -11.28602 -11.07596 -10.97609 -10.81460 -10.68429 -10.57076 -10.25569 -10.13630 -10.04304 -9.84876 -9.60166 -9.49115 -9.01381 -8.84888 -8.40992 -6.88573 -5.67921 -2.97217 2.31781 2.63340 2.77947 3.22226 3.48867 3.53137 3.54504 3.99517 4.06379 4.38807 4.54387 4.62867 4.64809 4.69748 4.79187 4.83695 4.92459 5.02799 5.09011 5.12130 5.23465 5.26387 5.28750 5.35787 5.38482 5.48540 5.52934 5.56473 5.63404 5.71528 5.78981 5.81253 5.83507 5.94218 6.03114 6.13442 6.21345 6.24143 6.24965 6.46111 6.50947 6.55146 6.75113 6.78368 6.85442 6.94643 7.13005 7.57920 7.76153 7.91155 8.34822 8.49701 9.60698 10.18504 10.52869 11.54239 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.002542 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.730723 B =11014.037374 C =12286.125999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.106 3.894 18 N -0.611 5.611 19 C 0.513 3.487 20 O -0.530 6.530 21 C -0.154 4.154 22 C 0.140 3.860 23 N -0.620 5.620 24 C 0.099 3.901 25 C -0.132 4.132 26 C -0.156 4.156 27 C 0.513 3.487 28 O -0.530 6.530 29 C 0.122 3.878 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.104 0.896 51 H 0.063 0.937 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -6.053 -27.080 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.370 4.370 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.300 3.700 20 O -0.406 6.406 21 C -0.195 4.195 22 C 0.018 3.982 23 N -0.354 5.354 24 C -0.024 4.024 25 C -0.170 4.170 26 C -0.196 4.196 27 C 0.300 3.700 28 O -0.406 6.406 29 C 0.001 3.999 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.119 0.881 50 H 0.122 0.878 51 H 0.081 0.919 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.786 -5.687 -26.084 26.842 hybrid contribution -0.100 0.203 0.870 0.899 sum 2.686 -5.484 -25.215 25.944 Atomic orbital electron populations 1.22480 0.99358 1.00753 0.99849 1.20171 0.91794 0.95263 0.85837 0.93569 1.42438 1.78081 1.10736 1.05261 1.19144 1.36818 0.93733 0.87353 0.91371 1.24733 1.02184 0.95936 0.97974 1.69657 1.50602 1.08599 1.28880 0.86315 0.77655 0.78643 0.83834 1.21416 1.21765 1.21329 1.21752 0.94770 1.00395 0.95280 0.91272 1.21630 1.01024 0.99086 0.93573 1.21917 0.94886 1.01502 0.98837 1.21728 0.94733 0.99244 0.85982 1.48204 1.44383 1.34069 1.07830 1.20370 0.79000 0.79769 0.90842 1.90790 1.56271 1.60062 1.33460 1.22018 1.00784 0.99897 0.96803 1.21131 0.98574 0.95303 0.83207 1.48374 1.28459 1.35085 1.23518 1.22168 0.98242 0.89929 0.92098 1.22636 0.95893 1.02346 0.96086 1.22346 0.99286 1.00730 0.97245 1.20980 0.80067 0.83030 0.85884 1.90757 1.47012 1.30687 1.72127 1.21705 0.93783 0.98966 0.85496 0.94326 0.93651 0.92893 0.78196 0.93494 0.91216 0.91880 0.91650 0.91053 0.90346 0.91415 0.88957 0.88823 0.88921 0.89174 0.90754 0.90175 0.89891 0.89121 0.88077 0.87823 0.91865 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.14 37.16 0.34 -2.58 16 2 C 0.18 3.50 2.47 -67.94 -0.17 3.33 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -18.16 4.52 -53.43 -0.24 -18.40 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 9 Si 0.90 22.96 29.55 -169.99 -5.02 17.93 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C -0.10 -1.64 1.97 -90.50 -0.18 -1.82 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.12 -1.39 4.85 -26.68 -0.13 -1.52 16 16 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 17 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 18 N -0.61 -8.78 2.97 -172.76 -0.51 -9.30 16 19 C 0.51 7.92 7.70 -10.98 -0.08 7.84 16 20 O -0.53 -10.74 15.40 5.56 0.09 -10.65 16 21 C -0.15 -1.68 4.37 -27.88 -0.12 -1.80 16 22 C 0.14 1.61 5.22 -4.05 -0.02 1.59 16 23 N -0.62 -5.78 2.93 -172.30 -0.51 -6.28 16 24 C 0.10 0.53 7.36 -3.03 -0.02 0.51 16 25 C -0.13 -0.47 7.19 -25.00 -0.18 -0.65 16 26 C -0.16 -0.93 6.86 -26.74 -0.18 -1.11 16 27 C 0.51 5.55 8.02 -10.86 -0.09 5.47 16 28 O -0.53 -8.28 17.59 5.56 0.10 -8.18 16 29 C 0.12 2.14 5.47 -3.71 -0.02 2.12 16 30 H 0.04 0.56 6.40 -51.93 -0.33 0.22 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.38 10.49 7.62 -40.82 -0.31 10.18 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.61 5.93 -51.93 -0.31 0.31 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 42 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 43 H 0.09 1.32 7.88 -51.93 -0.41 0.91 16 44 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.11 2.39 6.52 -51.93 -0.34 2.05 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -36.18 408.48 -9.65 -45.84 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -9.15 Total: 7.37 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.29 Total: 3.68 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.54 Total: -62.15 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.18 -9.65 -45.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753802087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.417 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds