Wall clock time and date at job start Tue Mar 31 2020 20:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47389 * 60.00084 * 9 7 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47026 * 300.00519 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.09007 * 110.88488 * 57.57165 * 13 2 1 15 15 C 1.55152 * 111.00775 * 181.45284 * 13 2 1 16 16 C 1.54323 * 102.94352 * 153.57800 * 15 13 2 17 17 N 1.47026 * 107.27057 * 337.80971 * 16 15 13 18 18 C 1.34779 * 125.64758 * 178.95826 * 17 16 15 19 19 O 1.21281 * 119.99668 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.00203 * 359.97438 * 18 17 16 21 21 C 1.52996 * 109.47122 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46968 * 179.97438 * 21 20 18 23 23 N 1.46502 * 109.47072 * 180.02562 * 22 21 20 24 24 C 1.34772 * 120.00325 * 180.02562 * 23 22 21 25 25 O 1.21283 * 119.99564 * 0.02562 * 24 23 22 26 26 C 1.50697 * 120.00542 * 179.97438 * 24 23 22 27 27 C 1.52998 * 117.49960 * 248.74956 * 26 24 23 28 28 C 1.53001 * 117.50063 * 180.08790 * 26 24 23 29 29 C 1.47422 * 108.70234 * 358.93900 * 17 16 15 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 34 34 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 35 35 H 1.08998 * 110.72172 * 271.94222 * 15 13 2 36 36 H 1.09003 * 110.71876 * 35.04241 * 15 13 2 37 37 H 1.09001 * 109.88426 * 97.22635 * 16 15 13 38 38 H 1.08996 * 109.88454 * 218.39109 * 16 15 13 39 39 H 1.09006 * 109.46403 * 299.99369 * 20 18 17 40 40 H 1.08992 * 109.47261 * 59.99171 * 20 18 17 41 41 H 1.08998 * 109.47288 * 299.99376 * 21 20 18 42 42 H 1.09000 * 109.47421 * 59.99862 * 21 20 18 43 43 H 1.08998 * 109.46906 * 299.99976 * 22 21 20 44 44 H 1.09000 * 109.46863 * 59.99887 * 22 21 20 45 45 H 0.97007 * 120.00134 * 359.97438 * 23 22 21 46 46 H 1.09000 * 115.54985 * 34.41364 * 26 24 23 47 47 H 1.09000 * 117.50346 * 359.97438 * 27 26 24 48 48 H 1.09007 * 117.50219 * 145.01667 * 27 26 24 49 49 H 1.09005 * 117.49617 * 214.97594 * 28 26 24 50 50 H 1.08998 * 117.49908 * 0.02562 * 28 26 24 51 51 H 1.08998 * 110.36791 * 265.28812 * 29 17 16 52 52 H 1.09004 * 110.36363 * 142.96617 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 3.7465 1.3928 -4.9362 11 1 3.3004 -0.6482 -6.1680 12 1 1.4692 0.8069 -5.5288 13 6 2.0400 -0.7212 1.2493 14 1 1.6547 -1.7398 1.2945 15 6 3.5905 -0.7102 1.3037 16 6 3.8841 -0.8149 2.8152 17 7 2.6858 -0.3453 3.5261 18 6 2.5341 -0.2995 4.8645 19 8 1.4974 0.1088 5.3436 20 6 3.6525 -0.7556 5.7658 21 6 3.2255 -0.6007 7.2268 22 6 4.3607 -1.0643 8.1417 23 7 3.9517 -0.9166 9.5407 24 6 4.7974 -1.2649 10.5305 25 8 5.8974 -1.7002 10.2631 26 6 4.3769 -1.1124 11.9696 27 6 5.0846 -0.0418 12.8027 28 6 5.3827 -1.5233 13.0469 29 6 1.6781 0.0676 2.5324 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 -1.1525 34 1 3.2490 -2.3961 -4.2418 35 1 4.0012 -1.5678 0.7708 36 1 3.9842 0.2206 0.8953 37 1 4.0909 -1.8514 3.0818 38 1 4.7372 -0.1868 3.0715 39 1 3.8792 -1.8022 5.5621 40 1 4.5388 -0.1491 5.5803 41 1 2.9990 0.4460 7.4301 42 1 2.3389 -1.2070 7.4125 43 1 4.5868 -2.1110 7.9383 44 1 5.2475 -0.4583 7.9561 45 1 3.0723 -0.5673 9.7547 46 1 3.3210 -1.2914 12.1723 47 1 5.8546 0.5519 12.3101 48 1 4.4943 0.4832 13.5538 49 1 4.9884 -1.9723 13.9585 50 1 6.3487 -1.9035 12.7147 51 1 1.7431 1.1402 2.3494 52 1 0.6778 -0.2001 2.8729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754796123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:51 Heat of formation + Delta-G solvation = -51.341778 kcal Electronic energy + Delta-G solvation = -28233.162437 eV Core-core repulsion = 24233.003973 eV Total energy + Delta-G solvation = -4000.158465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37432 -40.08386 -37.99429 -36.88121 -35.73186 -35.22217 -33.09112 -32.38532 -30.55718 -29.35879 -28.12957 -27.14401 -24.89894 -24.08066 -23.00142 -22.88095 -21.97815 -21.43994 -20.43548 -19.66633 -19.11133 -17.87908 -17.39622 -17.00550 -16.54291 -16.32328 -16.05802 -15.56621 -15.17594 -14.98061 -14.54231 -14.30201 -14.03605 -13.77183 -13.48108 -13.27468 -12.99625 -12.82998 -12.66842 -12.61440 -12.44075 -12.32349 -12.10197 -12.03983 -11.81438 -11.73184 -11.29104 -11.22779 -11.11877 -11.00453 -10.89647 -10.72684 -10.60660 -10.41081 -10.26904 -10.25728 -9.97289 -9.82752 -9.65093 -9.48389 -8.93633 -8.63543 -6.99280 -5.79404 -3.07931 2.09389 2.56827 2.63110 3.01884 3.37998 3.41856 3.47009 3.47381 4.19212 4.25439 4.31118 4.38874 4.54107 4.59362 4.63688 4.64100 4.77603 4.79011 5.02414 5.05976 5.10548 5.16443 5.22778 5.24835 5.30615 5.34777 5.44718 5.50243 5.51738 5.64139 5.67299 5.71586 5.80996 5.85456 5.88491 5.95868 6.02636 6.05079 6.19128 6.22167 6.37181 6.42623 6.57756 6.61748 6.84558 7.07333 7.07776 7.51105 7.67374 7.82533 8.09962 8.39075 9.50599 10.07474 10.42576 11.43082 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.001489 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.076445 B =18803.185525 C =19316.653002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.116 4.116 16 C 0.097 3.903 17 N -0.616 5.616 18 C 0.526 3.474 19 O -0.549 6.549 20 C -0.133 4.133 21 C -0.115 4.115 22 C 0.118 3.882 23 N -0.726 5.726 24 C 0.541 3.459 25 O -0.541 6.541 26 C -0.197 4.197 27 C -0.153 4.153 28 C -0.148 4.148 29 C 0.113 3.887 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.403 0.597 46 H 0.124 0.876 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.108 0.892 51 H 0.068 0.932 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 2.085 29.708 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.315 3.685 19 O -0.427 6.427 20 C -0.174 4.174 21 C -0.154 4.154 22 C -0.006 4.006 23 N -0.377 5.377 24 C 0.328 3.672 25 O -0.418 6.418 26 C -0.218 4.218 27 C -0.190 4.190 28 C -0.185 4.185 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.238 0.762 46 H 0.142 0.858 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.087 0.913 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.940 2.101 29.673 29.892 hybrid contribution -0.352 0.253 -1.071 1.156 sum 2.587 2.354 28.601 28.815 Atomic orbital electron populations 1.22487 0.99246 1.00949 1.00057 1.20131 0.91796 0.95151 0.85468 0.93315 1.42349 1.78177 1.10642 1.05112 1.19177 1.36548 0.93841 0.87344 0.91289 1.24704 1.02184 0.95940 0.97965 1.69639 1.50896 1.08637 1.28976 0.86302 0.77773 0.78612 0.83691 1.21314 1.21741 1.21333 1.22669 0.95396 1.00020 0.94157 0.90163 1.22569 0.96213 1.04307 0.92310 1.22202 0.87402 0.99228 0.93792 1.48618 1.17644 1.63776 1.04974 1.20218 0.88845 0.78220 0.81194 1.90695 1.29765 1.47736 1.74490 1.21518 0.98022 1.03826 0.94003 1.21516 0.97996 1.03387 0.92465 1.21401 0.97644 1.01916 0.79615 1.45917 1.19168 1.66470 1.06162 1.19686 0.84392 0.76874 0.86281 1.90711 1.21504 1.45175 1.84449 1.22207 1.00110 1.09099 0.90394 1.22962 1.02489 0.92214 1.01355 1.22974 1.00222 0.97292 0.98032 1.22310 0.92220 0.99040 0.87338 0.93467 0.92729 0.94415 0.78297 0.93501 0.89439 0.90156 0.91468 0.91523 0.88528 0.88577 0.90364 0.90351 0.91192 0.91245 0.76214 0.85778 0.88214 0.87683 0.87839 0.87359 0.91333 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.34 37.16 0.35 -2.57 16 2 C 0.18 3.40 2.41 -67.93 -0.16 3.24 16 3 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 4 N -0.72 -16.87 4.82 -53.43 -0.26 -17.12 16 5 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 9 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C -0.10 -1.54 2.62 -88.47 -0.23 -1.77 16 14 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 15 C -0.12 -1.60 6.13 -24.90 -0.15 -1.76 16 16 C 0.10 1.05 6.49 -3.06 -0.02 1.03 16 17 N -0.62 -7.74 3.33 -170.52 -0.57 -8.31 16 18 C 0.53 6.56 7.85 -10.98 -0.09 6.48 16 19 O -0.55 -8.69 16.24 5.56 0.09 -8.60 16 20 C -0.13 -1.09 4.89 -27.88 -0.14 -1.23 16 21 C -0.12 -0.87 4.62 -26.73 -0.12 -0.99 16 22 C 0.12 0.88 5.67 -4.04 -0.02 0.85 16 23 N -0.73 -5.11 5.56 -60.29 -0.33 -5.44 16 24 C 0.54 4.87 7.61 -10.99 -0.08 4.79 16 25 O -0.54 -7.05 16.26 5.56 0.09 -6.96 16 26 C -0.20 -1.18 6.19 -91.77 -0.57 -1.75 16 27 C -0.15 -0.77 10.24 -26.69 -0.27 -1.04 16 28 C -0.15 -0.85 10.05 -26.69 -0.27 -1.12 16 29 C 0.11 1.57 5.56 -2.53 -0.01 1.56 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 33 H 0.38 9.55 7.80 -40.82 -0.32 9.23 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.40 1.89 8.47 -40.82 -0.35 1.54 16 46 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.11 0.81 7.67 -51.93 -0.40 0.41 16 51 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 52 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 LS Contribution 424.98 15.07 6.40 6.40 Total: -1.00 -33.55 424.98 -10.34 -43.88 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -9.42 Total: 6.99 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.04 Total: -1.17 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.44 Total: -57.37 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.18 Total: -15.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.55 -10.34 -43.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754796123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.460 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds