Wall clock time and date at job start Tue Mar 31 2020 20:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47389 * 60.00084 * 9 7 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47026 * 300.00519 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.09007 * 110.88488 * 57.57165 * 13 2 1 15 15 C 1.55152 * 111.00775 * 181.45284 * 13 2 1 16 16 C 1.54323 * 102.94352 * 153.57800 * 15 13 2 17 17 N 1.47026 * 107.27057 * 337.80971 * 16 15 13 18 18 C 1.34779 * 125.64758 * 178.95826 * 17 16 15 19 19 O 1.21281 * 119.99668 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.00203 * 359.97438 * 18 17 16 21 21 C 1.52996 * 109.47122 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46968 * 179.97438 * 21 20 18 23 23 N 1.46502 * 109.47072 * 180.02562 * 22 21 20 24 24 C 1.34772 * 120.00325 * 180.02562 * 23 22 21 25 25 O 1.21283 * 119.99564 * 0.02562 * 24 23 22 26 26 C 1.50697 * 120.00542 * 179.97438 * 24 23 22 27 27 C 1.52998 * 117.49960 * 248.74956 * 26 24 23 28 28 C 1.53001 * 117.50063 * 180.08790 * 26 24 23 29 29 C 1.47422 * 108.70234 * 358.93900 * 17 16 15 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 34 34 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 35 35 H 1.08998 * 110.72172 * 271.94222 * 15 13 2 36 36 H 1.09003 * 110.71876 * 35.04241 * 15 13 2 37 37 H 1.09001 * 109.88426 * 97.22635 * 16 15 13 38 38 H 1.08996 * 109.88454 * 218.39109 * 16 15 13 39 39 H 1.09006 * 109.46403 * 299.99369 * 20 18 17 40 40 H 1.08992 * 109.47261 * 59.99171 * 20 18 17 41 41 H 1.08998 * 109.47288 * 299.99376 * 21 20 18 42 42 H 1.09000 * 109.47421 * 59.99862 * 21 20 18 43 43 H 1.08998 * 109.46906 * 299.99976 * 22 21 20 44 44 H 1.09000 * 109.46863 * 59.99887 * 22 21 20 45 45 H 0.97007 * 120.00134 * 359.97438 * 23 22 21 46 46 H 1.09000 * 115.54985 * 34.41364 * 26 24 23 47 47 H 1.09000 * 117.50346 * 359.97438 * 27 26 24 48 48 H 1.09007 * 117.50219 * 145.01667 * 27 26 24 49 49 H 1.09005 * 117.49617 * 214.97594 * 28 26 24 50 50 H 1.08998 * 117.49908 * 0.02562 * 28 26 24 51 51 H 1.08998 * 110.36791 * 265.28812 * 29 17 16 52 52 H 1.09004 * 110.36363 * 142.96617 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 3.7465 1.3928 -4.9362 11 1 3.3004 -0.6482 -6.1680 12 1 1.4692 0.8069 -5.5288 13 6 2.0400 -0.7212 1.2493 14 1 1.6547 -1.7398 1.2945 15 6 3.5905 -0.7102 1.3037 16 6 3.8841 -0.8149 2.8152 17 7 2.6858 -0.3453 3.5261 18 6 2.5341 -0.2995 4.8645 19 8 1.4974 0.1088 5.3436 20 6 3.6525 -0.7556 5.7658 21 6 3.2255 -0.6007 7.2268 22 6 4.3607 -1.0643 8.1417 23 7 3.9517 -0.9166 9.5407 24 6 4.7974 -1.2649 10.5305 25 8 5.8974 -1.7002 10.2631 26 6 4.3769 -1.1124 11.9696 27 6 5.0846 -0.0418 12.8027 28 6 5.3827 -1.5233 13.0469 29 6 1.6781 0.0676 2.5324 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 -1.1525 34 1 3.2490 -2.3961 -4.2418 35 1 4.0012 -1.5678 0.7708 36 1 3.9842 0.2206 0.8953 37 1 4.0909 -1.8514 3.0818 38 1 4.7372 -0.1868 3.0715 39 1 3.8792 -1.8022 5.5621 40 1 4.5388 -0.1491 5.5803 41 1 2.9990 0.4460 7.4301 42 1 2.3389 -1.2070 7.4125 43 1 4.5868 -2.1110 7.9383 44 1 5.2475 -0.4583 7.9561 45 1 3.0723 -0.5673 9.7547 46 1 3.3210 -1.2914 12.1723 47 1 5.8546 0.5519 12.3101 48 1 4.4943 0.4832 13.5538 49 1 4.9884 -1.9723 13.9585 50 1 6.3487 -1.9035 12.7147 51 1 1.7431 1.1402 2.3494 52 1 0.6778 -0.2001 2.8729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754796123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:50 Heat of formation + Delta-G solvation = -73.110037 kcal Electronic energy + Delta-G solvation = -28234.106380 eV Core-core repulsion = 24233.003973 eV Total energy + Delta-G solvation = -4001.102407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21927 -40.91887 -39.15068 -37.41092 -36.77256 -36.41124 -34.29028 -33.68180 -31.87358 -30.79708 -29.26910 -28.12924 -26.22131 -25.23466 -24.06947 -23.30412 -22.80380 -22.61174 -21.11697 -21.02712 -20.03165 -19.13808 -18.45837 -18.09943 -17.52723 -17.10854 -16.95120 -16.46831 -16.23894 -15.86414 -15.71806 -15.43308 -15.13495 -14.92576 -14.70706 -14.64746 -14.04652 -13.90990 -13.74875 -13.54201 -13.45440 -13.28024 -13.15823 -13.10029 -12.86250 -12.74635 -12.48474 -12.44182 -12.29274 -12.21550 -11.98278 -11.89902 -11.63236 -11.54362 -11.53114 -11.44952 -11.36532 -11.01812 -10.91878 -10.84143 -10.13099 -9.65063 -8.96457 -7.89990 -5.16858 1.45882 1.49820 1.51198 1.57153 1.62331 1.90086 2.23147 2.59096 2.92719 3.36901 3.44315 3.67102 3.70562 3.73632 3.86437 3.87556 3.97782 4.00348 4.01187 4.18023 4.24607 4.32951 4.33409 4.39836 4.51880 4.54112 4.61827 4.62144 4.69806 4.72539 4.74717 4.81618 4.90968 4.92608 5.00471 5.03678 5.06291 5.11410 5.15823 5.22122 5.22796 5.24929 5.36278 5.39436 5.42905 5.55899 5.61447 6.32016 6.51493 6.54860 7.13177 7.20904 7.39325 8.15406 8.39213 9.32958 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.001489 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.076445 B =18803.185525 C =19316.653002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.730 5.730 5 C -0.234 4.234 6 H 0.072 0.928 7 C -0.071 4.071 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.283 1.283 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.115 4.115 16 C 0.104 3.896 17 N -0.619 5.619 18 C 0.523 3.477 19 O -0.587 6.587 20 C -0.127 4.127 21 C -0.103 4.103 22 C 0.122 3.878 23 N -0.717 5.717 24 C 0.534 3.466 25 O -0.590 6.590 26 C -0.200 4.200 27 C -0.143 4.143 28 C -0.155 4.155 29 C 0.120 3.880 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.416 0.584 46 H 0.151 0.849 47 H 0.087 0.913 48 H 0.131 0.869 49 H 0.125 0.875 50 H 0.084 0.916 51 H 0.068 0.932 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 2.935 31.585 31.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.370 5.370 5 C -0.366 4.366 6 H 0.090 0.910 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.209 1.209 13 C -0.114 4.114 14 H 0.094 0.906 15 C -0.153 4.153 16 C -0.018 4.018 17 N -0.352 5.352 18 C 0.314 3.686 19 O -0.468 6.468 20 C -0.167 4.167 21 C -0.141 4.141 22 C -0.001 4.001 23 N -0.368 5.368 24 C 0.322 3.678 25 O -0.470 6.470 26 C -0.221 4.221 27 C -0.180 4.180 28 C -0.193 4.193 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.253 0.747 46 H 0.169 0.831 47 H 0.105 0.895 48 H 0.149 0.851 49 H 0.143 0.857 50 H 0.102 0.898 51 H 0.087 0.913 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.802 2.996 31.576 31.841 hybrid contribution -0.372 0.034 -1.611 1.654 sum 2.431 3.030 29.965 30.215 Atomic orbital electron populations 1.22357 0.98238 1.00768 1.00527 1.20306 0.92334 0.94892 0.85207 0.93637 1.42488 1.78342 1.10262 1.05889 1.19529 1.34644 0.94069 0.88404 0.90959 1.25408 1.03208 0.96774 1.00993 1.69785 1.52723 1.10019 1.29270 0.85342 0.77766 0.77418 0.80011 1.20494 1.22444 1.20900 1.22450 0.96388 0.99399 0.93147 0.90605 1.22487 0.94972 1.03138 0.94664 1.22233 0.87318 1.01096 0.91135 1.48688 1.17687 1.63717 1.05096 1.20936 0.89272 0.77279 0.81146 1.90680 1.31586 1.49479 1.75025 1.21568 0.96905 1.05170 0.93060 1.21376 0.97630 1.02944 0.92190 1.21313 0.97431 1.01567 0.79820 1.45887 1.19502 1.65549 1.05851 1.20257 0.83817 0.75997 0.87739 1.90686 1.23547 1.47514 1.85301 1.22303 1.01475 1.09918 0.88427 1.23044 1.02058 0.91745 1.01183 1.23020 0.99309 0.98180 0.98775 1.22113 0.92490 0.98728 0.87020 0.93961 0.94552 0.91575 0.79452 0.94223 0.90656 0.91335 0.89360 0.89054 0.86630 0.86490 0.90815 0.90905 0.91608 0.91568 0.74715 0.83095 0.89486 0.85116 0.85652 0.89752 0.91346 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 9.34 71.98 0.67 -4.78 16 2 C 0.18 6.61 2.41 44.99 0.11 6.72 16 3 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 4 N -0.73 -34.39 4.82 -322.94 -1.56 -35.95 16 5 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 6 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 8 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 9 Si 0.96 45.16 29.55 68.60 2.03 47.18 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C -0.09 -2.75 2.62 -9.40 -0.02 -2.78 16 14 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 15 C -0.11 -3.05 6.13 31.78 0.19 -2.85 16 16 C 0.10 1.98 6.49 86.73 0.56 2.55 16 17 N -0.62 -14.20 3.33 -811.79 -2.70 -16.90 16 18 C 0.52 11.93 7.85 87.66 0.69 12.62 16 19 O -0.59 -17.85 16.24 -3.03 -0.05 -17.90 16 20 C -0.13 -1.73 4.89 29.85 0.15 -1.58 16 21 C -0.10 -1.35 4.62 30.59 0.14 -1.21 16 22 C 0.12 1.63 5.67 86.38 0.49 2.12 16 23 N -0.72 -9.10 5.56 -463.06 -2.57 -11.67 16 24 C 0.53 9.22 7.61 87.66 0.67 9.89 16 25 O -0.59 -15.54 16.26 -3.04 -0.05 -15.59 16 26 C -0.20 -2.07 6.19 -11.54 -0.07 -2.14 16 27 C -0.14 -1.19 10.24 30.62 0.31 -0.88 16 28 C -0.16 -1.63 10.05 30.62 0.31 -1.32 16 29 C 0.12 3.16 5.56 86.86 0.48 3.64 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.87 7.45 -2.38 -0.02 1.86 16 33 H 0.37 18.95 7.80 -92.71 -0.72 18.23 16 34 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 42 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.42 3.11 8.47 -92.70 -0.79 2.33 16 46 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 49 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.08 1.30 7.67 -2.39 -0.02 1.29 16 51 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16 52 H 0.07 1.94 7.96 -2.39 -0.02 1.92 16 Total: -1.00 -73.83 424.98 0.76 -73.07 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.60 Total: 29.94 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.98 Total: 4.85 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -6.55 Total: -121.56 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.10 Total: -33.49 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -73.83 0.76 -73.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754796123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.041 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds