Wall clock time and date at job start Tue Mar 31 2020 19:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46439 * 2 1 4 4 C 1.52994 * 109.47229 * 240.00185 * 2 1 3 5 5 N 1.46502 * 109.47232 * 184.99804 * 4 2 1 6 6 C 1.34774 * 120.00036 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00418 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99570 * 179.97438 * 6 5 4 9 9 C 1.52947 * 109.40761 * 180.02562 * 8 6 5 10 10 C 1.53184 * 109.44835 * 176.91114 * 9 8 6 11 11 C 1.53146 * 108.88301 * 56.56851 * 10 9 8 12 12 C 1.52846 * 117.67745 * 91.48946 * 11 10 9 13 13 C 1.52805 * 117.74988 * 160.37048 * 11 10 9 14 14 C 1.53153 * 115.00626 * 306.05849 * 11 10 9 15 15 C 1.52934 * 109.41095 * 59.64797 * 8 6 5 16 16 N 1.46895 * 109.46890 * 119.99578 * 2 1 3 17 17 C 1.46899 * 111.00263 * 274.99977 * 16 2 1 18 18 C 1.50701 * 109.47239 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99949 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99846 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99759 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99893 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99868 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00114 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46709 * 60.00144 * 25 23 21 27 27 H 1.48497 * 109.47137 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47027 * 300.00163 * 25 23 21 29 29 H 1.08998 * 109.47555 * 60.00400 * 1 2 3 30 30 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47634 * 300.00297 * 1 2 3 32 32 H 1.09001 * 109.47562 * 64.99297 * 4 2 1 33 33 H 1.09006 * 109.46716 * 304.99483 * 4 2 1 34 34 H 0.96998 * 119.99659 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.35696 * 299.82046 * 8 6 5 36 36 H 1.08998 * 109.47963 * 296.89982 * 9 8 6 37 37 H 1.09002 * 109.47582 * 56.92340 * 9 8 6 38 38 H 1.08995 * 109.57119 * 176.39071 * 10 9 8 39 39 H 1.09004 * 109.56622 * 296.74630 * 10 9 8 40 40 H 1.08990 * 117.50691 * 215.22036 * 12 11 10 41 41 H 1.09003 * 117.50162 * 0.28495 * 12 11 10 42 42 H 1.09002 * 117.50024 * 359.85790 * 13 11 10 43 43 H 1.09007 * 117.49910 * 144.88817 * 13 11 10 44 44 H 1.08998 * 109.57351 * 294.11915 * 14 11 10 45 45 H 1.09004 * 109.56945 * 173.75509 * 14 11 10 46 46 H 1.08996 * 109.47798 * 303.07925 * 15 8 6 47 47 H 1.09004 * 109.47480 * 63.09400 * 15 8 6 48 48 H 1.00898 * 110.99616 * 151.05314 * 16 2 1 49 49 H 1.09000 * 109.47049 * 300.00694 * 17 16 2 50 50 H 1.09005 * 109.46813 * 60.00237 * 17 16 2 51 51 H 0.96996 * 120.00044 * 0.02562 * 20 18 17 52 52 H 0.97001 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1731 -1.4290 -2.1907 7 8 3.5701 -1.8840 -3.1394 8 6 5.6751 -1.5366 -2.1305 9 6 6.1834 -2.2578 -3.3798 10 6 7.7145 -2.2995 -3.3571 11 6 8.1728 -2.9748 -2.0612 12 6 8.3951 -4.4867 -2.0888 13 6 9.5929 -3.5370 -2.0156 14 6 7.6067 -2.3622 -0.7768 15 6 6.0790 -2.3180 -0.8795 16 7 2.0196 -0.6924 1.1995 17 6 2.0824 0.2227 2.3469 18 6 2.5884 -0.5213 3.5558 19 8 2.8696 -1.6981 3.4698 20 7 2.7285 0.1209 4.7324 21 6 3.1884 -0.5562 5.8323 22 1 3.4379 -1.6042 5.7560 23 6 3.3323 0.1057 7.0455 24 7 3.0272 1.3805 7.1387 25 14 3.9582 -0.8169 8.5444 26 1 5.3147 -1.3528 8.2649 27 1 4.0213 0.1081 9.7043 28 1 3.0368 -1.9392 8.8551 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2950 34 1 3.9824 -0.4620 -0.4319 35 1 6.1074 -0.5369 -2.0886 36 1 5.7924 -3.2751 -3.3966 37 1 5.8476 -1.7245 -4.2692 38 1 8.0769 -2.8684 -4.2132 39 1 8.1080 -1.2838 -3.3986 40 1 8.1430 -5.0491 -1.1898 41 1 8.2200 -5.0042 -3.0320 42 1 10.2057 -3.4298 -2.9107 43 1 10.1287 -3.4746 -1.0684 44 1 7.9933 -1.3506 -0.6534 45 1 7.8976 -2.9729 0.0780 46 1 5.6691 -1.8277 0.0034 47 1 5.6899 -3.3342 -0.9444 48 1 2.9173 -1.1203 1.0288 49 1 2.7587 1.0463 2.1181 50 1 1.0870 0.6164 2.5525 51 1 2.5034 1.0618 4.8012 52 1 3.1274 1.8425 7.9857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491532069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:05 Heat of formation + Delta-G solvation = -71.812066 kcal Electronic energy + Delta-G solvation = -29553.116132 eV Core-core repulsion = 25552.070009 eV Total energy + Delta-G solvation = -4001.046123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.51369 -39.06989 -38.39923 -37.00168 -34.90471 -34.15657 -33.72613 -31.38744 -31.17007 -30.80440 -28.54537 -26.68712 -25.86555 -23.98384 -23.08313 -22.86062 -22.13212 -20.67504 -20.18177 -19.33435 -18.89794 -17.97499 -17.45188 -16.37954 -16.11701 -15.77134 -15.58651 -15.38350 -15.09854 -14.79197 -14.47658 -14.18792 -13.97115 -13.83130 -13.68041 -13.43244 -13.09363 -12.82486 -12.58388 -12.53365 -12.41952 -12.27580 -12.05933 -11.92343 -11.76504 -11.73194 -11.66814 -11.44303 -11.28621 -11.08809 -11.00889 -10.87641 -10.47145 -10.38976 -10.29256 -10.24801 -9.95041 -9.66171 -9.53707 -9.18724 -8.51230 -8.16221 -8.00200 -6.45343 -3.86350 2.55048 3.03501 3.17385 3.23556 3.27753 3.52172 3.85735 4.01652 4.24964 4.28623 4.38934 4.53486 4.62317 4.65474 4.76042 4.80762 4.90304 4.95944 5.08357 5.14241 5.18089 5.21731 5.24931 5.27594 5.42302 5.50689 5.54087 5.55926 5.63859 5.66164 5.67355 5.71495 5.75286 5.77117 5.81953 5.90977 5.92813 5.95929 5.96768 5.97630 6.15304 6.15790 6.18713 6.25410 6.36404 7.12312 7.33040 7.51543 7.54517 8.02051 8.11049 8.57037 9.13993 9.49977 10.01212 10.72228 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.002723 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.866033 B =10280.554028 C =12861.947003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.048 0.952 4 C 0.118 3.882 5 N -0.731 5.731 6 C 0.520 3.480 7 O -0.542 6.542 8 C -0.105 4.105 9 C -0.094 4.094 10 C -0.080 4.080 11 C -0.124 4.124 12 C -0.174 4.174 13 C -0.177 4.177 14 C -0.080 4.080 15 C -0.109 4.109 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.347 0.653 49 H 0.043 0.957 50 H 0.088 0.912 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -0.970 -19.492 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.384 5.384 6 C 0.306 3.694 7 O -0.418 6.418 8 C -0.126 4.126 9 C -0.132 4.132 10 C -0.118 4.118 11 C -0.124 4.124 12 C -0.211 4.211 13 C -0.214 4.214 14 C -0.117 4.117 15 C -0.147 4.147 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.234 0.766 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.168 0.832 49 H 0.061 0.939 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.207 -2.209 -19.894 20.956 hybrid contribution 1.105 0.987 1.154 1.878 sum 7.312 -1.222 -18.740 20.153 Atomic orbital electron populations 1.21736 0.93407 1.02965 1.01527 1.21809 0.97136 0.95893 0.89058 0.93392 1.21596 0.79506 1.01970 0.97524 1.46105 1.08048 1.60277 1.24008 1.20686 0.90011 0.76875 0.81801 1.90684 1.70444 1.47386 1.33327 1.21329 0.91367 1.01786 0.98119 1.21306 0.94413 1.01369 0.96129 1.21163 0.95360 1.00395 0.94856 1.21521 0.98487 0.95588 0.96776 1.23027 1.02603 0.92317 1.03157 1.22990 0.90835 1.04593 1.03008 1.21135 0.94436 1.01085 0.95048 1.21523 0.96245 1.01088 0.95848 1.60119 1.34794 1.32257 1.02701 1.21762 1.01501 0.93785 0.91318 1.19784 0.85109 0.88212 0.84452 1.90530 1.55320 1.16073 1.84735 1.41858 1.57641 1.12441 1.07951 1.19652 1.40099 0.96429 0.86817 0.87964 1.25260 0.97593 0.95770 0.99230 1.69601 1.48496 1.08888 1.27303 0.85922 0.79435 0.78872 0.80036 1.19895 1.20962 1.19851 0.92509 0.91515 0.91993 0.90924 0.90378 0.76606 0.88633 0.91095 0.91191 0.91578 0.91460 0.88782 0.88977 0.89014 0.88843 0.91197 0.91141 0.90983 0.90962 0.83176 0.93894 0.89399 0.77472 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.07 0.82 2.81 -67.72 -0.19 0.63 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.11 16 4 C 0.12 1.34 5.31 -4.04 -0.02 1.32 16 5 N -0.73 -8.06 4.86 -60.29 -0.29 -8.36 16 6 C 0.52 6.31 7.15 -10.98 -0.08 6.24 16 7 O -0.54 -8.43 15.95 5.56 0.09 -8.34 16 8 C -0.10 -1.00 2.44 -91.83 -0.22 -1.22 16 9 C -0.09 -0.89 4.52 -26.66 -0.12 -1.01 16 10 C -0.08 -0.63 5.67 -26.56 -0.15 -0.78 16 11 C -0.12 -1.03 1.97 -154.53 -0.31 -1.33 16 12 C -0.17 -1.43 9.93 -26.79 -0.27 -1.70 16 13 C -0.18 -1.36 9.99 -26.81 -0.27 -1.62 16 14 C -0.08 -0.70 5.67 -26.56 -0.15 -0.85 16 15 C -0.11 -1.05 5.13 -26.67 -0.14 -1.19 16 16 N -0.66 -10.05 5.93 -107.99 -0.64 -10.69 16 17 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 18 C 0.44 9.99 7.82 -10.98 -0.09 9.91 16 19 O -0.58 -15.35 15.78 5.55 0.09 -15.26 16 20 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 25 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 3.97 6.72 -40.82 -0.27 3.69 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 38 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.35 5.38 6.41 -39.29 -0.25 5.13 16 49 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 50 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 51 H 0.39 9.23 7.90 -40.82 -0.32 8.90 16 52 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 415.44 15.07 6.26 6.26 Total: -1.00 -31.90 415.44 -9.87 -41.77 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -9.10 Total: 16.02 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.92 Total: 0.18 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.27 Total: -56.34 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.18 Total: -23.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.90 -9.87 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491532069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.045 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds