Wall clock time and date at job start Tue Mar 31 2020 19:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46439 * 2 1 4 4 C 1.52994 * 109.47229 * 240.00185 * 2 1 3 5 5 N 1.46502 * 109.47232 * 184.99804 * 4 2 1 6 6 C 1.34774 * 120.00036 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00418 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99570 * 179.97438 * 6 5 4 9 9 C 1.52947 * 109.40761 * 180.02562 * 8 6 5 10 10 C 1.53184 * 109.44835 * 176.91114 * 9 8 6 11 11 C 1.53146 * 108.88301 * 56.56851 * 10 9 8 12 12 C 1.52846 * 117.67745 * 91.48946 * 11 10 9 13 13 C 1.52805 * 117.74988 * 160.37048 * 11 10 9 14 14 C 1.53153 * 115.00626 * 306.05849 * 11 10 9 15 15 C 1.52934 * 109.41095 * 59.64797 * 8 6 5 16 16 N 1.46895 * 109.46890 * 119.99578 * 2 1 3 17 17 C 1.46899 * 111.00263 * 274.99977 * 16 2 1 18 18 C 1.50701 * 109.47239 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99949 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99846 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99759 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99893 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99868 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00114 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46709 * 60.00144 * 25 23 21 27 27 H 1.48497 * 109.47137 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47027 * 300.00163 * 25 23 21 29 29 H 1.08998 * 109.47555 * 60.00400 * 1 2 3 30 30 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47634 * 300.00297 * 1 2 3 32 32 H 1.09001 * 109.47562 * 64.99297 * 4 2 1 33 33 H 1.09006 * 109.46716 * 304.99483 * 4 2 1 34 34 H 0.96998 * 119.99659 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.35696 * 299.82046 * 8 6 5 36 36 H 1.08998 * 109.47963 * 296.89982 * 9 8 6 37 37 H 1.09002 * 109.47582 * 56.92340 * 9 8 6 38 38 H 1.08995 * 109.57119 * 176.39071 * 10 9 8 39 39 H 1.09004 * 109.56622 * 296.74630 * 10 9 8 40 40 H 1.08990 * 117.50691 * 215.22036 * 12 11 10 41 41 H 1.09003 * 117.50162 * 0.28495 * 12 11 10 42 42 H 1.09002 * 117.50024 * 359.85790 * 13 11 10 43 43 H 1.09007 * 117.49910 * 144.88817 * 13 11 10 44 44 H 1.08998 * 109.57351 * 294.11915 * 14 11 10 45 45 H 1.09004 * 109.56945 * 173.75509 * 14 11 10 46 46 H 1.08996 * 109.47798 * 303.07925 * 15 8 6 47 47 H 1.09004 * 109.47480 * 63.09400 * 15 8 6 48 48 H 1.00898 * 110.99616 * 151.05314 * 16 2 1 49 49 H 1.09000 * 109.47049 * 300.00694 * 17 16 2 50 50 H 1.09005 * 109.46813 * 60.00237 * 17 16 2 51 51 H 0.96996 * 120.00044 * 0.02562 * 20 18 17 52 52 H 0.97001 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1731 -1.4290 -2.1907 7 8 3.5701 -1.8840 -3.1394 8 6 5.6751 -1.5366 -2.1305 9 6 6.1834 -2.2578 -3.3798 10 6 7.7145 -2.2995 -3.3571 11 6 8.1728 -2.9748 -2.0612 12 6 8.3951 -4.4867 -2.0888 13 6 9.5929 -3.5370 -2.0156 14 6 7.6067 -2.3622 -0.7768 15 6 6.0790 -2.3180 -0.8795 16 7 2.0196 -0.6924 1.1995 17 6 2.0824 0.2227 2.3469 18 6 2.5884 -0.5213 3.5558 19 8 2.8696 -1.6981 3.4698 20 7 2.7285 0.1209 4.7324 21 6 3.1884 -0.5562 5.8323 22 1 3.4379 -1.6042 5.7560 23 6 3.3323 0.1057 7.0455 24 7 3.0272 1.3805 7.1387 25 14 3.9582 -0.8169 8.5444 26 1 5.3147 -1.3528 8.2649 27 1 4.0213 0.1081 9.7043 28 1 3.0368 -1.9392 8.8551 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2950 34 1 3.9824 -0.4620 -0.4319 35 1 6.1074 -0.5369 -2.0886 36 1 5.7924 -3.2751 -3.3966 37 1 5.8476 -1.7245 -4.2692 38 1 8.0769 -2.8684 -4.2132 39 1 8.1080 -1.2838 -3.3986 40 1 8.1430 -5.0491 -1.1898 41 1 8.2200 -5.0042 -3.0320 42 1 10.2057 -3.4298 -2.9107 43 1 10.1287 -3.4746 -1.0684 44 1 7.9933 -1.3506 -0.6534 45 1 7.8976 -2.9729 0.0780 46 1 5.6691 -1.8277 0.0034 47 1 5.6899 -3.3342 -0.9444 48 1 2.9173 -1.1203 1.0288 49 1 2.7587 1.0463 2.1181 50 1 1.0870 0.6164 2.5525 51 1 2.5034 1.0618 4.8012 52 1 3.1274 1.8425 7.9857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491532069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:04 Heat of formation + Delta-G solvation = -93.134768 kcal Electronic energy + Delta-G solvation = -29554.040753 eV Core-core repulsion = 25552.070009 eV Total energy + Delta-G solvation = -4001.970745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40734 -40.24300 -39.72111 -38.20449 -35.97257 -35.69739 -34.94373 -33.26843 -32.16458 -31.77519 -29.31710 -28.13376 -26.96732 -25.64702 -23.82256 -23.56889 -22.87334 -21.66861 -21.19037 -20.97366 -19.91261 -19.59834 -18.51352 -17.69486 -17.16560 -16.93175 -16.74961 -16.36768 -16.23353 -16.13665 -15.78009 -15.51512 -15.31051 -14.90223 -14.63195 -14.38824 -14.29772 -13.85081 -13.72705 -13.48249 -13.40551 -13.28478 -13.26927 -13.05443 -12.93768 -12.84114 -12.72620 -12.56931 -12.41788 -12.36253 -12.12309 -12.00077 -11.89028 -11.77180 -11.49174 -11.11756 -11.05330 -10.72838 -10.42705 -10.33283 -10.15678 -10.00491 -9.37389 -8.45888 -5.94266 1.40084 1.42555 1.52845 1.58298 2.06231 2.13742 2.29452 2.85681 2.89235 3.21830 3.48480 3.57337 3.62720 3.71097 3.80052 3.94709 4.04270 4.11898 4.16114 4.19021 4.26489 4.35249 4.39012 4.41785 4.46142 4.52510 4.60230 4.62894 4.80184 4.80793 4.82103 4.89101 4.92625 4.95379 5.00212 5.04571 5.07790 5.09290 5.19502 5.25664 5.29884 5.30037 5.41724 5.43176 5.45807 5.48591 5.88530 6.09456 6.35336 6.41766 6.61185 7.13772 7.16563 7.57658 8.12966 8.71165 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.002723 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.866033 B =10280.554028 C =12861.947003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.725 5.725 6 C 0.517 3.483 7 O -0.580 6.580 8 C -0.097 4.097 9 C -0.091 4.091 10 C -0.074 4.074 11 C -0.130 4.130 12 C -0.185 4.185 13 C -0.168 4.168 14 C -0.078 4.078 15 C -0.105 4.105 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.406 0.594 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.343 0.657 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 0.564 -19.883 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.377 5.377 6 C 0.304 3.696 7 O -0.459 6.459 8 C -0.118 4.118 9 C -0.129 4.129 10 C -0.111 4.111 11 C -0.130 4.130 12 C -0.222 4.222 13 C -0.204 4.204 14 C -0.115 4.115 15 C -0.143 4.143 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.163 0.837 49 H 0.091 0.909 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.977 -0.639 -20.279 21.456 hybrid contribution 0.814 0.475 1.231 1.550 sum 7.791 -0.164 -19.049 20.581 Atomic orbital electron populations 1.21751 0.92723 1.02450 1.02638 1.21851 0.97517 0.96450 0.87270 0.91252 1.21538 0.79580 1.01084 0.97972 1.46080 1.08039 1.59710 1.23898 1.21155 0.91048 0.76078 0.81270 1.90665 1.71365 1.49034 1.34859 1.21331 0.89536 1.02955 0.97994 1.21253 0.95669 1.00065 0.95873 1.21134 0.93868 1.01258 0.94855 1.21551 0.99219 0.95477 0.96710 1.23061 1.03585 0.92515 1.03024 1.23040 0.90451 1.03305 1.03650 1.21123 0.93494 1.01721 0.95200 1.21463 0.97095 0.99972 0.95766 1.60114 1.34798 1.32925 1.03729 1.21622 1.02586 0.93688 0.88943 1.20869 0.83229 0.87972 0.85434 1.90504 1.56610 1.18193 1.85595 1.41916 1.58234 1.12601 1.08173 1.19609 1.42131 0.95929 0.88609 0.90375 1.25989 0.97256 0.96582 1.01266 1.69658 1.48563 1.09665 1.28167 0.85037 0.78778 0.77840 0.77008 1.19576 1.19554 1.19930 0.90044 0.92893 0.92218 0.89758 0.92345 0.75780 0.86328 0.93098 0.91585 0.90849 0.90124 0.89520 0.88706 0.87862 0.88648 0.90022 0.91729 0.91307 0.92828 0.83657 0.90910 0.87781 0.76948 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.41 71.98 0.68 -2.01 16 2 C 0.08 1.64 2.81 44.92 0.13 1.77 16 3 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 4 C 0.12 2.64 5.31 86.38 0.46 3.10 16 5 N -0.72 -15.29 4.86 -463.06 -2.25 -17.54 16 6 C 0.52 12.36 7.15 87.66 0.63 12.99 16 7 O -0.58 -18.20 15.95 -3.02 -0.05 -18.25 16 8 C -0.10 -1.77 2.44 -11.58 -0.03 -1.80 16 9 C -0.09 -1.67 4.52 30.64 0.14 -1.53 16 10 C -0.07 -1.05 5.67 30.70 0.17 -0.87 16 11 C -0.13 -2.00 1.97 -52.20 -0.10 -2.10 16 12 C -0.18 -2.97 9.93 30.55 0.30 -2.67 16 13 C -0.17 -2.31 9.99 30.54 0.31 -2.00 16 14 C -0.08 -1.29 5.67 30.71 0.17 -1.12 16 15 C -0.10 -2.00 5.13 30.63 0.16 -1.85 16 16 N -0.68 -19.75 5.93 -495.58 -2.94 -22.69 16 17 C 0.06 2.00 5.97 85.56 0.51 2.51 16 18 C 0.44 19.88 7.82 87.66 0.69 20.56 16 19 O -0.62 -33.40 15.78 -3.06 -0.05 -33.45 16 20 N -0.57 -28.31 5.29 -306.98 -1.62 -29.93 16 21 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 25 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.20 7.45 -2.39 -0.02 1.19 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.41 7.50 6.72 -92.71 -0.62 6.88 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 38 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.15 8.09 -2.38 -0.02 1.13 16 46 H 0.07 1.34 7.45 -2.39 -0.02 1.33 16 47 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.34 10.39 6.41 -89.70 -0.58 9.82 16 49 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 50 H 0.10 2.99 7.44 -2.38 -0.02 2.97 16 51 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 52 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -69.57 415.44 -0.11 -69.68 By element: Atomic # 1 Polarization: 50.10 SS G_CDS: -1.00 Total: 49.09 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.49 Total: 7.19 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -6.53 Total: -118.47 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.10 Total: -51.70 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.57 -0.11 -69.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491532069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.457 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds