Wall clock time and date at job start Tue Mar 31 2020 19:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 C 1.53002 * 109.47103 * 239.99509 * 2 1 3 5 5 N 1.46504 * 109.46989 * 184.45475 * 4 2 1 6 6 C 1.34776 * 119.99741 * 176.82733 * 5 4 2 7 7 O 1.21280 * 119.99804 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99996 * 180.02562 * 6 5 4 9 9 C 1.52300 * 115.91504 * 111.70969 * 8 6 5 10 10 C 1.52058 * 115.93127 * 180.02562 * 8 6 5 11 11 H 1.09002 * 117.25397 * 359.53514 * 10 8 6 12 12 C 1.52711 * 120.52525 * 149.25922 * 10 8 6 13 13 C 1.52878 * 110.15242 * 338.52958 * 12 10 8 14 14 C 1.53298 * 108.57938 * 54.51881 * 13 12 10 15 15 C 1.52075 * 114.63375 * 326.62217 * 8 6 5 16 16 N 1.46904 * 109.46908 * 119.99796 * 2 1 3 17 17 C 1.46900 * 111.00101 * 290.30607 * 16 2 1 18 18 C 1.46892 * 111.00134 * 54.26505 * 16 2 1 19 19 C 1.50697 * 109.47406 * 169.99859 * 18 16 2 20 20 O 1.21297 * 120.00160 * 359.97438 * 19 18 16 21 21 N 1.34782 * 120.00413 * 179.97438 * 19 18 16 22 22 C 1.37094 * 120.00087 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00033 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99969 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00199 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99711 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47128 * 90.00350 * 26 24 22 28 28 H 1.48502 * 109.47090 * 209.99955 * 26 24 22 29 29 H 1.48496 * 109.47336 * 330.00256 * 26 24 22 30 30 H 1.09003 * 109.46921 * 300.00276 * 1 2 3 31 31 H 1.09003 * 109.46667 * 59.99892 * 1 2 3 32 32 H 1.08994 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47174 * 304.46000 * 4 2 1 34 34 H 1.09003 * 109.46555 * 64.46017 * 4 2 1 35 35 H 0.97001 * 119.99793 * 356.83793 * 5 4 2 36 36 H 1.09005 * 117.53983 * 213.90379 * 9 8 6 37 37 H 1.09005 * 117.54260 * 359.15231 * 9 8 6 38 38 H 1.09003 * 109.35578 * 98.73603 * 12 10 8 39 39 H 1.09002 * 109.35944 * 218.45963 * 12 10 8 40 40 H 1.08999 * 109.62122 * 174.25180 * 13 12 10 41 41 H 1.09002 * 109.61681 * 294.79382 * 13 12 10 42 42 H 1.08997 * 109.62132 * 45.29439 * 14 13 12 43 43 H 1.09004 * 109.61329 * 165.64909 * 14 13 12 44 44 H 1.08998 * 109.26823 * 314.63413 * 15 8 6 45 45 H 1.08992 * 109.27265 * 74.10348 * 15 8 6 46 46 H 1.09007 * 109.46882 * 66.79617 * 17 16 2 47 47 H 1.08997 * 109.47211 * 186.79079 * 17 16 2 48 48 H 1.08994 * 109.47357 * 306.79946 * 17 16 2 49 49 H 1.09005 * 109.47210 * 289.99865 * 18 16 2 50 50 H 1.09005 * 109.47249 * 49.99889 * 18 16 2 51 51 H 0.97002 * 119.99675 * 359.97438 * 21 19 18 52 52 H 0.96999 * 120.00302 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5011 -0.8150 -1.1967 6 6 4.1695 -1.4711 -2.1658 7 8 3.5614 -1.9836 -3.0815 8 6 5.6724 -1.5679 -2.1116 9 6 6.2410 -2.9567 -1.8522 10 6 6.3314 -2.3281 -3.2518 11 1 5.6767 -2.7507 -4.0141 12 6 7.7325 -1.9510 -3.7279 13 6 8.0584 -0.5141 -3.3200 14 6 7.8566 -0.3784 -1.8065 15 6 6.3641 -0.3571 -1.5048 16 7 2.0196 -0.6925 1.1995 17 6 1.7464 0.0939 2.4098 18 6 1.4399 -2.0381 1.3040 19 6 2.1420 -2.8042 2.3954 20 8 3.0376 -2.2808 3.0241 21 7 1.7748 -4.0710 2.6731 22 6 2.4132 -4.7677 3.6663 23 1 3.2107 -4.3016 4.2261 24 6 2.0350 -6.0738 3.9522 25 7 2.6473 -6.7419 4.9039 26 14 0.6563 -6.8802 2.9835 27 1 1.2225 -7.5675 1.7951 28 1 -0.0393 -7.8709 3.8436 29 1 -0.3104 -5.8432 2.5416 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6129 -1.7233 -1.2900 34 1 1.7433 -0.1635 -2.1374 35 1 3.9873 -0.4048 -0.4644 36 1 7.1600 -3.0244 -1.2699 37 1 5.5327 -3.7731 -1.7110 38 1 8.4605 -2.6276 -3.2803 39 1 7.7802 -2.0359 -4.8136 40 1 9.0942 -0.2879 -3.5730 41 1 7.3930 0.1741 -3.8412 42 1 8.3102 -1.2297 -1.2989 43 1 8.3190 0.5448 -1.4570 44 1 5.9291 0.5516 -1.9207 45 1 6.2183 -0.3633 -0.4247 46 1 0.6700 0.1446 2.5749 47 1 2.2234 -0.3810 3.2671 48 1 2.1426 1.1017 2.2855 49 1 0.3787 -1.9593 1.5403 50 1 1.5631 -2.5615 0.3558 51 1 1.0584 -4.4895 2.1705 52 1 2.3830 -7.6535 5.1037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717488537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:29 Heat of formation + Delta-G solvation = -48.858486 kcal Electronic energy + Delta-G solvation = -30719.154282 eV Core-core repulsion = 26719.103501 eV Total energy + Delta-G solvation = -4000.050781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.74366 -39.33616 -38.19908 -37.25704 -34.42545 -33.86045 -33.18516 -31.67781 -31.44735 -30.64085 -28.27594 -26.87213 -25.12604 -24.75503 -23.97499 -23.19138 -21.51013 -20.52002 -20.31856 -19.23173 -18.46052 -18.15119 -17.44760 -16.64554 -16.05842 -15.45304 -15.24450 -15.02377 -14.76968 -14.57740 -14.36788 -14.19426 -14.09509 -13.79029 -13.70629 -13.44562 -13.21451 -12.98053 -12.78404 -12.56914 -12.49098 -12.26900 -12.18492 -12.05242 -11.97734 -11.76514 -11.36547 -11.27279 -11.12946 -11.02238 -10.96740 -10.85375 -10.68443 -10.59290 -10.05685 -9.98056 -9.80601 -9.58324 -9.53905 -8.94177 -8.60343 -8.18374 -7.98452 -6.31471 -3.82582 2.61309 3.02480 3.07645 3.15350 3.18505 3.73467 3.74319 3.89892 4.10402 4.43578 4.52284 4.57810 4.62902 4.72170 4.81968 4.90251 4.93703 5.06569 5.09091 5.14098 5.20653 5.32376 5.36492 5.37496 5.40719 5.46230 5.51506 5.64110 5.65483 5.71141 5.75776 5.76635 5.77621 5.83818 5.85379 5.91426 5.95995 5.97604 6.01645 6.05074 6.08681 6.14214 6.25489 6.45105 6.54604 7.09993 7.23385 7.58090 7.66301 8.14283 8.34294 8.59955 8.95065 9.42521 9.83389 10.81635 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.003436 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.678040 B = 8146.425996 C = 9503.671026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 H 0.090 0.910 4 C 0.128 3.872 5 N -0.708 5.708 6 C 0.546 3.454 7 O -0.551 6.551 8 C -0.141 4.141 9 C -0.152 4.152 10 C -0.117 4.117 11 H 0.114 0.886 12 C -0.089 4.089 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.083 4.083 16 N -0.510 5.510 17 C 0.020 3.980 18 C 0.038 3.962 19 C 0.454 3.546 20 O -0.560 6.560 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.877 3.123 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.019 0.981 47 H 0.098 0.902 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.088 0.912 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 14.623 -15.757 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.045 4.045 3 H 0.108 0.892 4 C 0.003 3.997 5 N -0.359 5.359 6 C 0.332 3.668 7 O -0.430 6.430 8 C -0.144 4.144 9 C -0.189 4.189 10 C -0.136 4.136 11 H 0.132 0.868 12 C -0.126 4.126 13 C -0.157 4.157 14 C -0.158 4.158 15 C -0.120 4.120 16 N -0.233 5.233 17 C -0.127 4.127 18 C -0.093 4.093 19 C 0.240 3.760 20 O -0.442 6.442 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.522 5.522 26 Si 0.704 3.296 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.037 0.963 47 H 0.116 0.884 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.106 0.894 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.709 14.365 -15.868 21.723 hybrid contribution -2.024 -0.640 -0.139 2.127 sum 1.685 13.725 -16.007 21.153 Atomic orbital electron populations 1.22407 0.96559 1.02892 1.02626 1.22058 0.93495 0.98452 0.90478 0.89206 1.21405 0.80625 1.00971 0.96667 1.45733 1.07219 1.56201 1.26758 1.19633 0.88194 0.77420 0.81512 1.90661 1.69650 1.47465 1.35209 1.21004 0.91572 0.96047 1.05760 1.23237 1.02928 0.93510 0.99255 1.22265 0.97660 1.01711 0.91969 0.86800 1.21087 0.93993 0.96718 1.00821 1.21571 1.01131 0.96863 0.96147 1.21484 0.95671 1.02305 0.96311 1.20718 0.95297 0.95256 1.00778 1.61799 1.57926 1.01466 1.02128 1.22568 0.98534 0.97538 0.94086 1.21977 0.96743 0.90745 0.99872 1.19613 0.86887 0.82654 0.86827 1.90511 1.32239 1.68357 1.53069 1.42216 1.34016 1.12598 1.34242 1.19410 1.17223 0.95446 1.11142 0.86267 1.25019 0.97947 0.96264 0.96829 1.69615 1.41138 1.11519 1.29886 0.86706 0.82210 0.80117 0.80569 1.19567 1.20172 1.19580 0.91770 0.91836 0.91839 0.91419 0.91376 0.75300 0.87684 0.88300 0.91290 0.91469 0.91830 0.91731 0.91521 0.91381 0.91360 0.90586 0.96294 0.88369 0.92184 0.93049 0.89368 0.79809 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.46 37.16 0.31 -1.45 16 2 C 0.06 0.70 2.45 -67.71 -0.17 0.53 16 3 H 0.09 0.86 7.98 -51.93 -0.41 0.44 16 4 C 0.13 1.53 4.87 -4.04 -0.02 1.51 16 5 N -0.71 -9.08 5.27 -60.29 -0.32 -9.39 16 6 C 0.55 7.90 7.28 -10.98 -0.08 7.82 16 7 O -0.55 -9.70 16.07 5.56 0.09 -9.61 16 8 C -0.14 -1.70 2.49 -156.97 -0.39 -2.09 16 9 C -0.15 -1.87 9.27 -26.73 -0.25 -2.12 16 10 C -0.12 -1.34 5.66 -90.89 -0.51 -1.85 16 11 H 0.11 1.47 7.50 -51.93 -0.39 1.08 16 12 C -0.09 -0.78 5.83 -26.94 -0.16 -0.94 16 13 C -0.12 -0.96 5.93 -26.64 -0.16 -1.12 16 14 C -0.12 -1.01 5.67 -26.94 -0.15 -1.16 16 15 C -0.08 -0.81 4.68 -27.57 -0.13 -0.94 16 16 N -0.51 -7.27 3.97 -236.33 -0.94 -8.21 16 17 C 0.02 0.29 8.84 60.06 0.53 0.82 16 18 C 0.04 0.62 4.40 -4.98 -0.02 0.60 16 19 C 0.45 10.07 7.53 -10.98 -0.08 9.99 16 20 O -0.56 -14.29 13.88 5.54 0.08 -14.21 16 21 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 22 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 23 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 25 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 26 Si 0.88 19.58 27.74 -169.99 -4.71 14.86 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 29 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 30 H 0.06 0.61 6.82 -51.93 -0.35 0.25 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.65 6.55 -51.93 -0.34 0.31 16 33 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 5.02 7.19 -40.82 -0.29 4.73 16 36 H 0.10 1.16 7.26 -51.93 -0.38 0.78 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 42 H 0.07 0.58 7.11 -51.93 -0.37 0.21 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.76 7.81 -51.93 -0.41 0.36 16 46 H 0.02 0.24 6.88 -51.92 -0.36 -0.11 16 47 H 0.10 1.77 5.94 -51.93 -0.31 1.46 16 48 H 0.06 0.71 8.00 -51.93 -0.42 0.29 16 49 H 0.05 0.76 6.80 -51.93 -0.35 0.41 16 50 H 0.09 1.39 6.16 -51.93 -0.32 1.07 16 51 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 52 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -32.90 398.85 -9.22 -42.12 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -8.62 Total: 15.50 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.52 Total: 1.98 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.54 Total: -56.65 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.90 -9.22 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717488537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.739 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds