Wall clock time and date at job start Tue Mar 31 2020 19:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47209 * 2 1 4 4 C 1.53000 * 109.46863 * 120.00181 * 2 1 3 5 5 N 1.46501 * 109.46891 * 174.99904 * 4 2 1 6 6 C 1.34772 * 119.99876 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00301 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.55926 * 115.91781 * 297.93406 * 8 6 5 10 10 C 1.54584 * 104.64508 * 199.96780 * 9 8 6 11 11 C 1.55931 * 104.63943 * 0.02562 * 10 9 8 12 12 C 1.55923 * 105.22954 * 289.53055 * 11 10 9 13 13 C 1.55917 * 115.92343 * 62.05966 * 8 6 5 14 14 C 1.56949 * 100.65258 * 33.78049 * 11 10 9 15 15 N 1.46902 * 109.46908 * 239.99991 * 2 1 3 16 16 C 1.46903 * 110.99815 * 306.04816 * 15 2 1 17 17 C 1.46904 * 111.00019 * 70.00154 * 15 2 1 18 18 C 1.50695 * 109.46798 * 169.99959 * 17 15 2 19 19 O 1.21288 * 120.00231 * 0.27184 * 18 17 15 20 20 N 1.34784 * 119.99635 * 180.02562 * 18 17 15 21 21 C 1.37099 * 119.99504 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00446 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99366 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00272 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99631 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47423 * 89.99791 * 25 23 21 27 27 H 1.48505 * 109.46968 * 209.99733 * 25 23 21 28 28 H 1.48504 * 109.47133 * 329.99196 * 25 23 21 29 29 H 1.08999 * 109.47509 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47023 * 300.00648 * 1 2 3 31 31 H 1.09009 * 109.47077 * 59.99912 * 1 2 3 32 32 H 1.08993 * 109.46806 * 294.99841 * 4 2 1 33 33 H 1.09005 * 109.47237 * 54.99884 * 4 2 1 34 34 H 0.96998 * 119.99833 * 359.97438 * 5 4 2 35 35 H 1.08997 * 110.40561 * 318.75845 * 9 8 6 36 36 H 1.08999 * 110.40320 * 81.17880 * 9 8 6 37 37 H 1.08994 * 110.40560 * 241.21155 * 10 9 8 38 38 H 1.09007 * 110.49966 * 118.83726 * 10 9 8 39 39 H 1.09004 * 115.91963 * 160.03091 * 11 10 9 40 40 H 1.09004 * 110.39965 * 189.26206 * 12 11 10 41 41 H 1.08999 * 110.40164 * 311.56039 * 12 11 10 42 42 H 1.09003 * 110.40204 * 278.82491 * 13 8 6 43 43 H 1.08999 * 110.40358 * 41.24089 * 13 8 6 44 44 H 1.08994 * 112.02497 * 189.69631 * 14 11 10 45 45 H 1.09001 * 112.02830 * 63.17175 * 14 11 10 46 46 H 1.09007 * 109.46744 * 183.95335 * 16 15 2 47 47 H 1.08999 * 109.47042 * 303.95148 * 16 15 2 48 48 H 1.08994 * 109.47348 * 63.95823 * 16 15 2 49 49 H 1.09005 * 109.47078 * 49.99840 * 17 15 2 50 50 H 1.09002 * 109.47005 * 290.00056 * 17 15 2 51 51 H 0.96999 * 120.00044 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1911 7 8 3.5700 -1.8826 3.1403 8 6 5.6750 -1.5360 2.1311 9 6 6.2521 -2.3601 0.9398 10 6 7.6826 -2.7413 1.3849 11 6 7.8347 -2.1122 2.8035 12 6 7.9055 -0.5731 2.5636 13 6 6.4549 -0.1861 2.1112 14 6 6.3677 -2.2545 3.3429 15 7 2.0197 -0.6925 -1.1995 16 6 1.4342 -2.0355 -1.3078 17 6 1.7529 0.0972 -2.4091 18 6 2.4774 -0.5163 -3.5794 19 8 3.1457 -1.5162 -3.4224 20 7 2.3786 0.0432 -4.8016 21 6 3.0381 -0.5147 -5.8662 22 1 3.6364 -1.4027 -5.7256 23 6 2.9366 0.0625 -7.1261 24 7 2.2082 1.1427 -7.2973 25 14 3.8347 -0.6981 -8.5769 26 1 2.9545 -1.6959 -9.2360 27 1 4.1930 0.3651 -9.5498 28 1 5.0706 -1.3678 -8.0981 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 1.7516 -0.1584 2.1369 33 1 1.6053 -1.7199 1.2951 34 1 3.9823 -0.4629 0.4316 35 1 5.6546 -3.2563 0.7729 36 1 6.2849 -1.7507 0.0367 37 1 8.4186 -2.3193 0.7008 38 1 7.7903 -3.8248 1.4366 39 1 8.6211 -2.5335 3.4298 40 1 8.1758 -0.0570 3.4848 41 1 8.6232 -0.3440 1.7759 42 1 6.4696 0.2295 1.1036 43 1 6.0070 0.5218 2.8086 44 1 6.2213 -1.7127 4.2772 45 1 6.0630 -3.2976 3.4286 46 1 1.8663 -2.5521 -2.1649 47 1 1.6465 -2.5988 -0.3991 48 1 0.3555 -1.9520 -1.4399 49 1 2.1025 1.1189 -2.2604 50 1 0.6814 0.1054 -2.6087 51 1 1.8415 0.8410 -4.9278 52 1 2.1371 1.5454 -8.1769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734044921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:16 Heat of formation + Delta-G solvation = -69.919725 kcal Electronic energy + Delta-G solvation = -30441.285686 eV Core-core repulsion = 26440.321621 eV Total energy + Delta-G solvation = -4000.964065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78847 -39.27627 -38.39247 -37.22075 -34.31843 -33.80550 -31.33668 -31.10506 -30.56120 -29.78172 -27.89878 -27.78198 -26.33285 -25.35979 -23.82674 -22.38908 -21.88202 -20.14567 -19.63416 -19.12533 -18.80915 -17.86274 -17.16579 -16.50463 -16.03713 -15.70032 -15.42426 -15.12527 -14.94560 -14.81932 -14.44341 -14.32214 -14.06387 -13.51354 -13.26863 -13.07317 -12.84302 -12.77444 -12.71682 -12.35759 -12.28504 -11.93508 -11.86385 -11.75820 -11.46735 -11.40962 -11.24309 -11.23284 -11.17045 -11.15146 -10.98762 -10.94466 -10.75943 -10.47136 -10.41446 -10.24369 -10.12127 -9.67407 -9.50145 -8.93700 -8.50203 -8.00738 -7.87623 -6.44432 -3.85184 2.67446 3.15457 3.24358 3.25120 3.30040 3.87585 3.93704 4.17439 4.21829 4.30196 4.36670 4.71537 4.85370 4.92100 4.98811 5.02915 5.11153 5.17032 5.20204 5.23986 5.24709 5.28008 5.31270 5.44873 5.50395 5.55454 5.57468 5.65774 5.73705 5.76967 5.77459 5.82060 5.88426 5.91196 5.91934 5.94412 5.98288 6.01822 6.09690 6.14258 6.14993 6.19365 6.25223 6.52495 6.58383 7.21233 7.33086 7.52608 7.67632 8.03726 8.33521 8.59117 9.15697 9.51946 10.03652 10.73301 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.002880 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.785623 B = 9718.367287 C =11492.266769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 H 0.087 0.913 4 C 0.132 3.868 5 N -0.709 5.709 6 C 0.543 3.457 7 O -0.551 6.551 8 C -0.103 4.103 9 C -0.106 4.106 10 C -0.118 4.118 11 C -0.107 4.107 12 C -0.117 4.117 13 C -0.107 4.107 14 C -0.094 4.094 15 N -0.510 5.510 16 C 0.018 3.982 17 C 0.044 3.956 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.020 0.980 49 H 0.087 0.913 50 H 0.049 0.951 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -0.231 18.337 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 H 0.105 0.895 4 C 0.007 3.993 5 N -0.360 5.360 6 C 0.329 3.671 7 O -0.429 6.429 8 C -0.106 4.106 9 C -0.144 4.144 10 C -0.156 4.156 11 C -0.126 4.126 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.132 4.132 15 N -0.233 5.233 16 C -0.130 4.130 17 C -0.087 4.087 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.038 0.962 49 H 0.105 0.895 50 H 0.067 0.933 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.855 -1.158 18.950 19.596 hybrid contribution -0.780 0.559 -1.458 1.746 sum 4.074 -0.599 17.492 17.970 Atomic orbital electron populations 1.22399 0.96590 1.02842 1.02578 1.22043 0.93492 0.98515 0.90564 0.89456 1.21359 0.80503 1.00813 0.96607 1.45827 1.07468 1.59132 1.23539 1.19756 0.88222 0.77178 0.81993 1.90666 1.70062 1.48312 1.33874 1.22909 0.90679 0.98196 0.98777 1.22551 0.95788 0.99760 0.96327 1.22600 0.96525 1.00468 0.95981 1.23575 0.96948 0.95591 0.96447 1.22964 0.96129 0.95393 1.01012 1.22934 0.94788 0.94849 1.01929 1.23343 0.93377 1.00339 0.96145 1.61806 1.58192 1.02791 1.00536 1.22591 0.96319 0.90257 1.03836 1.21892 0.98654 0.97684 0.90477 1.19724 0.86443 0.87151 0.83735 1.90483 1.44542 1.26902 1.84184 1.41871 1.44587 1.27132 1.06527 1.19685 1.26181 1.10905 0.86021 0.87932 1.25252 0.97543 0.96137 0.98978 1.69609 1.39897 1.20301 1.24544 0.85876 0.79702 0.78417 0.80415 1.20448 1.20934 1.19395 0.91768 0.91959 0.91795 0.91404 0.91527 0.75209 0.91333 0.90545 0.91365 0.91656 0.88316 0.91680 0.91361 0.90852 0.91560 0.90994 0.90902 0.88571 0.92233 0.96158 0.89523 0.93263 0.77548 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.44 37.16 0.31 -1.57 16 2 C 0.06 0.72 2.47 -67.71 -0.17 0.56 16 3 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 4 C 0.13 1.57 4.85 -4.04 -0.02 1.55 16 5 N -0.71 -8.89 5.39 -60.29 -0.32 -9.21 16 6 C 0.54 7.43 7.20 -10.99 -0.08 7.35 16 7 O -0.55 -9.30 16.51 5.56 0.09 -9.21 16 8 C -0.10 -1.15 1.27 -150.38 -0.19 -1.34 16 9 C -0.11 -1.18 5.88 -24.34 -0.14 -1.32 16 10 C -0.12 -1.09 6.23 -24.33 -0.15 -1.24 16 11 C -0.11 -0.91 5.14 -85.35 -0.44 -1.35 16 12 C -0.12 -0.96 6.33 -23.12 -0.15 -1.11 16 13 C -0.11 -1.02 5.99 -23.12 -0.14 -1.16 16 14 C -0.09 -0.99 5.64 -22.43 -0.13 -1.11 16 15 N -0.51 -7.53 3.89 -236.32 -0.92 -8.45 16 16 C 0.02 0.27 8.32 60.07 0.50 0.77 16 17 C 0.04 0.72 5.02 -4.98 -0.02 0.70 16 18 C 0.44 9.88 7.51 -10.98 -0.08 9.80 16 19 O -0.58 -14.65 13.87 5.55 0.08 -14.57 16 20 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 21 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 25 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 29 H 0.06 0.68 6.41 -51.93 -0.33 0.35 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 6.91 -51.92 -0.36 0.31 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 34 H 0.41 5.13 8.14 -40.82 -0.33 4.80 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.88 7.87 -51.93 -0.41 0.48 16 37 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 42 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.84 5.87 -51.92 -0.30 1.54 16 47 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 48 H 0.02 0.29 6.46 -51.93 -0.34 -0.05 16 49 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 50 H 0.05 0.76 7.06 -51.93 -0.37 0.39 16 51 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 52 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -30.88 402.31 -9.32 -40.20 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -8.81 Total: 13.94 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.14 Total: 2.78 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.58 Total: -54.85 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.17 Total: -23.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.88 -9.32 -40.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734044921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.723 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds