Wall clock time and date at job start Tue Mar 31 2020 20:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46897 * 2 1 4 4 N 1.46502 * 109.47321 * 240.00279 * 2 1 3 5 5 C 1.34773 * 120.00310 * 84.99943 * 4 2 1 6 6 O 1.21281 * 119.99896 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00285 * 179.97438 * 5 4 2 8 8 C 1.54266 * 110.03246 * 297.90945 * 7 5 4 9 9 C 1.54965 * 104.15782 * 217.13246 * 8 7 5 10 10 C 1.54883 * 102.77861 * 37.88843 * 9 8 7 11 11 C 1.53870 * 110.03464 * 180.68864 * 7 5 4 12 12 C 1.50696 * 109.47264 * 119.99826 * 2 1 3 13 13 O 1.21284 * 119.99984 * 110.09052 * 12 2 1 14 14 N 1.34774 * 120.00391 * 290.09300 * 12 2 1 15 15 C 1.46494 * 120.00298 * 185.23307 * 14 12 2 16 16 C 1.46503 * 119.99836 * 5.23765 * 14 12 2 17 17 H 1.08998 * 110.64016 * 1.06757 * 16 14 12 18 18 C 1.55156 * 110.72547 * 124.40518 * 16 14 12 19 19 C 1.55130 * 101.48307 * 82.69261 * 18 16 14 20 20 N 1.47421 * 104.72170 * 37.30066 * 19 18 16 21 21 C 1.36940 * 125.65050 * 155.81382 * 20 19 18 22 22 H 1.07996 * 120.00385 * 196.49063 * 21 20 19 23 23 C 1.38818 * 119.99778 * 16.49239 * 21 20 19 24 24 N 1.31622 * 119.99646 * 28.29781 * 23 21 20 25 25 Si 1.86797 * 119.99803 * 208.57321 * 23 21 20 26 26 H 1.48505 * 109.46866 * 179.72185 * 25 23 21 27 27 H 1.48499 * 109.47229 * 299.72441 * 25 23 21 28 28 H 1.48493 * 109.47011 * 59.72564 * 25 23 21 29 29 C 1.47020 * 108.70523 * 335.54710 * 20 19 18 30 30 H 1.09000 * 109.47228 * 300.34873 * 1 2 3 31 31 H 1.09005 * 109.47236 * 60.34734 * 1 2 3 32 32 H 1.08998 * 109.47280 * 180.34158 * 1 2 3 33 33 H 0.97006 * 119.99649 * 265.00131 * 4 2 1 34 34 H 1.09005 * 110.01363 * 59.29845 * 7 5 4 35 35 H 1.08993 * 110.48506 * 335.77952 * 8 7 5 36 36 H 1.09008 * 110.48703 * 98.42636 * 8 7 5 37 37 H 1.09000 * 110.71867 * 279.57448 * 9 8 7 38 38 H 1.09003 * 110.92056 * 156.29709 * 9 8 7 39 39 H 1.08993 * 110.48829 * 203.40264 * 10 9 8 40 40 H 1.09003 * 110.59855 * 80.81064 * 10 9 8 41 41 H 1.08999 * 110.03291 * 238.56992 * 11 7 5 42 42 H 1.08995 * 110.03233 * 0.02562 * 11 7 5 43 43 H 1.09002 * 109.47552 * 264.22297 * 15 14 12 44 44 H 1.08996 * 109.46974 * 24.22363 * 15 14 12 45 45 H 1.09006 * 109.46993 * 144.22695 * 15 14 12 46 46 H 1.08999 * 111.00654 * 200.93314 * 18 16 14 47 47 H 1.09003 * 110.99954 * 324.78787 * 18 16 14 48 48 H 1.08990 * 110.49886 * 278.45635 * 19 18 16 49 49 H 1.09002 * 110.34146 * 156.05866 * 19 18 16 50 50 H 0.96998 * 120.00648 * 6.33638 * 24 23 21 51 51 H 1.09006 * 109.88388 * 120.70500 * 29 20 19 52 52 H 1.08997 * 109.88479 * 241.71664 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1586 -2.4115 7 6 2.6500 -0.7284 -3.5874 8 6 4.0850 -1.2430 -3.3511 9 6 4.7895 -1.0421 -4.7166 10 6 4.2005 0.3022 -5.2114 11 6 2.7232 0.2534 -4.7700 12 6 2.0323 -0.7103 1.2304 13 8 2.5746 -1.7904 1.1282 14 7 1.8790 -0.1456 2.4445 15 6 2.4674 -0.7795 3.6269 16 6 1.1237 1.1022 2.5818 17 1 0.7401 1.4275 1.6148 18 6 -0.0295 0.9361 3.6064 19 6 0.7162 1.1558 4.9489 20 7 1.7031 2.2123 4.6608 21 6 2.2580 3.0592 5.5828 22 1 2.7578 3.9594 5.2573 23 6 2.1780 2.7604 6.9361 24 7 2.1036 1.5067 7.3299 25 14 2.1680 4.1379 8.1977 26 1 2.0697 3.5592 9.5618 27 1 3.4228 4.9237 8.0825 28 1 1.0036 5.0259 7.9517 29 6 1.9978 2.2021 3.2204 30 1 -0.3634 0.5192 0.8868 31 1 -0.3634 0.5084 -0.8931 32 1 -0.3634 -1.0276 0.0061 33 1 2.2491 -1.6318 -1.1526 34 1 1.9906 -1.5608 -3.8335 35 1 4.5785 -0.6551 -2.5773 36 1 4.0718 -2.2986 -3.0794 37 1 4.5373 -1.8503 -5.4032 38 1 5.8696 -0.9675 -4.5902 39 1 4.2722 0.3738 -6.2966 40 1 4.7119 1.1416 -4.7401 41 1 2.1000 -0.1029 -5.5902 42 1 2.3954 1.2437 -4.4539 43 1 1.7163 -1.3964 4.1202 44 1 3.3083 -1.4034 3.3241 45 1 2.8154 -0.0101 4.3163 46 1 -0.7990 1.6930 3.4547 47 1 -0.4545 -0.0664 3.5571 48 1 1.2200 0.2407 5.2598 49 1 0.0199 1.4871 5.7193 50 1 2.1971 0.7890 6.6841 51 1 1.7520 3.1706 2.7848 52 1 3.0528 1.9805 3.0595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753436621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:55 Heat of formation + Delta-G solvation = -48.337009 kcal Electronic energy + Delta-G solvation = -30792.677453 eV Core-core repulsion = 26792.649285 eV Total energy + Delta-G solvation = -4000.028168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86221 -39.89894 -37.99533 -37.30768 -35.15777 -34.61373 -32.12955 -31.56258 -29.31877 -29.17665 -28.90002 -28.10516 -26.59505 -24.71043 -23.86388 -21.98450 -21.15492 -20.95918 -20.28314 -19.99065 -19.00106 -17.93297 -17.65112 -16.76120 -16.57539 -15.96073 -15.63543 -15.34961 -14.94037 -14.64807 -14.53285 -14.17468 -14.03404 -13.75026 -13.63393 -13.37322 -13.07982 -12.93195 -12.72021 -12.21899 -12.17903 -12.00896 -11.96224 -11.78585 -11.66522 -11.57594 -11.41895 -11.39157 -11.23170 -11.09117 -10.81001 -10.80344 -10.63965 -10.46229 -10.35816 -10.03484 -9.94931 -9.79298 -9.60083 -9.31052 -8.51771 -8.44343 -7.01992 -6.16202 -3.21038 2.40106 2.55714 2.71341 3.26226 3.47570 3.51455 3.69084 4.15022 4.24816 4.29597 4.43634 4.54043 4.82002 4.90828 4.92265 4.98560 5.03129 5.07196 5.13491 5.17756 5.23147 5.28650 5.30027 5.35569 5.46624 5.52001 5.53565 5.56014 5.62599 5.73939 5.79168 5.84096 5.88545 5.89015 5.95341 5.95917 5.99671 6.05122 6.17429 6.23411 6.25899 6.40563 6.47953 6.64513 6.87420 6.94171 7.31978 7.47744 7.72562 8.02072 8.10621 8.42452 8.94234 9.74195 10.27803 11.16304 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002433 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.924610 B =11504.478942 C =11730.534715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 H 0.113 0.887 4 N -0.711 5.711 5 C 0.522 3.478 6 O -0.538 6.538 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.119 4.119 12 C 0.511 3.489 13 O -0.547 6.547 14 N -0.586 5.586 15 C 0.081 3.919 16 C 0.108 3.892 17 H 0.104 0.896 18 C -0.147 4.147 19 C 0.136 3.864 20 N -0.600 5.600 21 C -0.338 4.338 22 H 0.065 0.935 23 C -0.023 4.023 24 N -0.914 5.914 25 Si 1.063 2.937 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.124 3.876 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.036 0.964 49 H 0.052 0.948 50 H 0.267 0.733 51 H 0.038 0.962 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -6.974 -22.136 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.131 0.869 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.415 6.415 7 C -0.133 4.133 8 C -0.154 4.154 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.157 4.157 12 C 0.298 3.702 13 O -0.426 6.426 14 N -0.317 5.317 15 C -0.061 4.061 16 C 0.004 3.996 17 H 0.122 0.878 18 C -0.186 4.186 19 C 0.011 3.989 20 N -0.327 5.327 21 C -0.466 4.466 22 H 0.083 0.917 23 C -0.225 4.225 24 N -0.555 5.555 25 Si 0.893 3.107 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.221 1.221 29 C -0.003 4.003 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.055 0.945 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.257 -6.279 -20.491 21.468 hybrid contribution 0.276 -0.740 -1.449 1.650 sum -0.981 -7.019 -21.940 23.056 Atomic orbital electron populations 1.22330 0.92746 1.03354 1.04111 1.20763 0.95861 0.98117 0.83714 0.86941 1.45786 1.67349 1.14862 1.08492 1.20634 0.76826 0.87266 0.84468 1.90678 1.50062 1.16001 1.84773 1.21943 0.98555 0.99364 0.93406 1.22389 0.93130 1.01441 0.98488 1.22509 0.99853 0.97648 0.96099 1.22368 0.95565 0.97684 1.00623 1.22171 0.97061 1.00791 0.95656 1.20480 0.79321 0.85709 0.84734 1.90651 1.44689 1.21066 1.86177 1.47756 1.52474 1.24587 1.06916 1.21901 0.98191 0.98951 0.87080 1.22590 0.92944 0.83980 1.00067 0.87821 1.23223 0.96720 1.01402 0.97270 1.21791 0.91068 0.92564 0.93467 1.44557 1.46522 1.39726 1.01930 1.19719 1.37621 1.00997 0.88223 0.91704 1.25729 0.99596 1.00932 0.96220 1.70813 1.48501 0.99028 1.37178 0.83548 0.76206 0.74733 0.76249 1.21100 1.22027 1.22102 1.21693 0.96490 0.94972 0.87123 0.89910 0.90738 0.91697 0.75335 0.88314 0.90988 0.90680 0.91264 0.91270 0.91521 0.91456 0.91441 0.89104 0.92632 0.91170 0.88898 0.90216 0.91281 0.94626 0.92994 0.92117 0.94460 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.05 37.16 0.34 -1.48 16 2 C 0.12 1.57 2.13 -69.08 -0.15 1.43 16 3 H 0.11 1.54 6.97 -51.93 -0.36 1.18 16 4 N -0.71 -8.14 4.94 -54.94 -0.27 -8.41 16 5 C 0.52 6.09 6.96 -10.99 -0.08 6.02 16 6 O -0.54 -8.03 14.87 5.56 0.08 -7.95 16 7 C -0.11 -0.95 3.29 -90.66 -0.30 -1.25 16 8 C -0.12 -0.91 6.30 -25.03 -0.16 -1.07 16 9 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16 10 C -0.12 -0.93 6.83 -25.07 -0.17 -1.11 16 11 C -0.12 -1.01 6.40 -25.61 -0.16 -1.18 16 12 C 0.51 7.70 7.04 -10.99 -0.08 7.63 16 13 O -0.55 -9.35 15.37 5.55 0.09 -9.26 16 14 N -0.59 -9.27 2.83 -171.84 -0.49 -9.76 16 15 C 0.08 1.38 8.46 59.84 0.51 1.89 16 16 C 0.11 1.69 2.61 -66.09 -0.17 1.51 16 17 H 0.10 1.37 4.20 -51.93 -0.22 1.15 16 18 C -0.15 -2.38 6.40 -24.46 -0.16 -2.53 16 19 C 0.14 2.92 4.45 -2.41 -0.01 2.91 16 20 N -0.60 -14.24 2.88 -169.93 -0.49 -14.73 16 21 C -0.34 -9.19 10.02 -15.06 -0.15 -9.34 16 22 H 0.07 1.78 7.97 -52.49 -0.42 1.36 16 23 C -0.02 -0.63 5.08 -17.43 -0.09 -0.72 16 24 N -0.91 -26.58 12.92 55.49 0.72 -25.86 16 25 Si 1.06 24.82 30.00 -169.99 -5.10 19.72 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 C 0.12 2.43 6.18 -3.06 -0.02 2.41 16 30 H 0.08 0.87 5.31 -51.93 -0.28 0.60 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 4.35 7.71 -40.82 -0.31 4.03 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.98 6.39 -51.93 -0.33 0.65 16 43 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 44 H 0.07 1.18 7.33 -51.93 -0.38 0.80 16 45 H 0.09 1.87 5.65 -51.93 -0.29 1.57 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.04 0.80 4.15 -51.93 -0.22 0.58 16 49 H 0.05 1.25 7.94 -51.93 -0.41 0.83 16 50 H 0.27 7.67 6.09 -40.82 -0.25 7.42 16 51 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -31.92 394.23 -9.10 -41.02 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.56 Total: 5.18 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.02 Total: 4.10 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.53 Total: -58.76 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.17 Total: -17.21 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.10 Total: 19.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.92 -9.10 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753436621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.312 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds