Wall clock time and date at job start Tue Mar 31 2020 20:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46897 * 2 1 4 4 N 1.46502 * 109.47321 * 240.00279 * 2 1 3 5 5 C 1.34773 * 120.00310 * 84.99943 * 4 2 1 6 6 O 1.21281 * 119.99896 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00285 * 179.97438 * 5 4 2 8 8 C 1.54266 * 110.03246 * 297.90945 * 7 5 4 9 9 C 1.54965 * 104.15782 * 217.13246 * 8 7 5 10 10 C 1.54883 * 102.77861 * 37.88843 * 9 8 7 11 11 C 1.53870 * 110.03464 * 180.68864 * 7 5 4 12 12 C 1.50696 * 109.47264 * 119.99826 * 2 1 3 13 13 O 1.21284 * 119.99984 * 110.09052 * 12 2 1 14 14 N 1.34774 * 120.00391 * 290.09300 * 12 2 1 15 15 C 1.46494 * 120.00298 * 185.23307 * 14 12 2 16 16 C 1.46503 * 119.99836 * 5.23765 * 14 12 2 17 17 H 1.08998 * 110.64016 * 1.06757 * 16 14 12 18 18 C 1.55156 * 110.72547 * 124.40518 * 16 14 12 19 19 C 1.55130 * 101.48307 * 82.69261 * 18 16 14 20 20 N 1.47421 * 104.72170 * 37.30066 * 19 18 16 21 21 C 1.36940 * 125.65050 * 155.81382 * 20 19 18 22 22 H 1.07996 * 120.00385 * 196.49063 * 21 20 19 23 23 C 1.38818 * 119.99778 * 16.49239 * 21 20 19 24 24 N 1.31622 * 119.99646 * 28.29781 * 23 21 20 25 25 Si 1.86797 * 119.99803 * 208.57321 * 23 21 20 26 26 H 1.48505 * 109.46866 * 179.72185 * 25 23 21 27 27 H 1.48499 * 109.47229 * 299.72441 * 25 23 21 28 28 H 1.48493 * 109.47011 * 59.72564 * 25 23 21 29 29 C 1.47020 * 108.70523 * 335.54710 * 20 19 18 30 30 H 1.09000 * 109.47228 * 300.34873 * 1 2 3 31 31 H 1.09005 * 109.47236 * 60.34734 * 1 2 3 32 32 H 1.08998 * 109.47280 * 180.34158 * 1 2 3 33 33 H 0.97006 * 119.99649 * 265.00131 * 4 2 1 34 34 H 1.09005 * 110.01363 * 59.29845 * 7 5 4 35 35 H 1.08993 * 110.48506 * 335.77952 * 8 7 5 36 36 H 1.09008 * 110.48703 * 98.42636 * 8 7 5 37 37 H 1.09000 * 110.71867 * 279.57448 * 9 8 7 38 38 H 1.09003 * 110.92056 * 156.29709 * 9 8 7 39 39 H 1.08993 * 110.48829 * 203.40264 * 10 9 8 40 40 H 1.09003 * 110.59855 * 80.81064 * 10 9 8 41 41 H 1.08999 * 110.03291 * 238.56992 * 11 7 5 42 42 H 1.08995 * 110.03233 * 0.02562 * 11 7 5 43 43 H 1.09002 * 109.47552 * 264.22297 * 15 14 12 44 44 H 1.08996 * 109.46974 * 24.22363 * 15 14 12 45 45 H 1.09006 * 109.46993 * 144.22695 * 15 14 12 46 46 H 1.08999 * 111.00654 * 200.93314 * 18 16 14 47 47 H 1.09003 * 110.99954 * 324.78787 * 18 16 14 48 48 H 1.08990 * 110.49886 * 278.45635 * 19 18 16 49 49 H 1.09002 * 110.34146 * 156.05866 * 19 18 16 50 50 H 0.96998 * 120.00648 * 6.33638 * 24 23 21 51 51 H 1.09006 * 109.88388 * 120.70500 * 29 20 19 52 52 H 1.08997 * 109.88479 * 241.71664 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1586 -2.4115 7 6 2.6500 -0.7284 -3.5874 8 6 4.0850 -1.2430 -3.3511 9 6 4.7895 -1.0421 -4.7166 10 6 4.2005 0.3022 -5.2114 11 6 2.7232 0.2534 -4.7700 12 6 2.0323 -0.7103 1.2304 13 8 2.5746 -1.7904 1.1282 14 7 1.8790 -0.1456 2.4445 15 6 2.4674 -0.7795 3.6269 16 6 1.1237 1.1022 2.5818 17 1 0.7401 1.4275 1.6148 18 6 -0.0295 0.9361 3.6064 19 6 0.7162 1.1558 4.9489 20 7 1.7031 2.2123 4.6608 21 6 2.2580 3.0592 5.5828 22 1 2.7578 3.9594 5.2573 23 6 2.1780 2.7604 6.9361 24 7 2.1036 1.5067 7.3299 25 14 2.1680 4.1379 8.1977 26 1 2.0697 3.5592 9.5618 27 1 3.4228 4.9237 8.0825 28 1 1.0036 5.0259 7.9517 29 6 1.9978 2.2021 3.2204 30 1 -0.3634 0.5192 0.8868 31 1 -0.3634 0.5084 -0.8931 32 1 -0.3634 -1.0276 0.0061 33 1 2.2491 -1.6318 -1.1526 34 1 1.9906 -1.5608 -3.8335 35 1 4.5785 -0.6551 -2.5773 36 1 4.0718 -2.2986 -3.0794 37 1 4.5373 -1.8503 -5.4032 38 1 5.8696 -0.9675 -4.5902 39 1 4.2722 0.3738 -6.2966 40 1 4.7119 1.1416 -4.7401 41 1 2.1000 -0.1029 -5.5902 42 1 2.3954 1.2437 -4.4539 43 1 1.7163 -1.3964 4.1202 44 1 3.3083 -1.4034 3.3241 45 1 2.8154 -0.0101 4.3163 46 1 -0.7990 1.6930 3.4547 47 1 -0.4545 -0.0664 3.5571 48 1 1.2200 0.2407 5.2598 49 1 0.0199 1.4871 5.7193 50 1 2.1971 0.7890 6.6841 51 1 1.7520 3.1706 2.7848 52 1 3.0528 1.9805 3.0595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753436621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:54 Heat of formation + Delta-G solvation = -68.182106 kcal Electronic energy + Delta-G solvation = -30793.538001 eV Core-core repulsion = 26792.649285 eV Total energy + Delta-G solvation = -4000.888716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99158 -40.95974 -39.43261 -38.08265 -36.25232 -36.16819 -33.94748 -32.52153 -30.96232 -30.06833 -29.61086 -29.42369 -27.96782 -26.38458 -25.12968 -22.99515 -22.39397 -22.05558 -21.57391 -20.89121 -20.12448 -19.59686 -18.92250 -17.90043 -17.71787 -16.87188 -16.69199 -16.48490 -16.25649 -16.03696 -15.72421 -15.60773 -15.21030 -15.13450 -14.84696 -14.38880 -14.27526 -14.23701 -13.95096 -13.57469 -13.54121 -13.36229 -13.07442 -12.77964 -12.67393 -12.66815 -12.59310 -12.54502 -12.27030 -12.05207 -12.03020 -11.95815 -11.95295 -11.78015 -11.68366 -11.57917 -11.42054 -11.05548 -10.84973 -10.49962 -10.30755 -9.86785 -9.00417 -8.31517 -5.32626 1.27635 1.51236 1.58171 1.63487 1.65260 1.84051 2.19385 2.63647 3.09230 3.20115 3.45060 3.49027 3.62289 3.64214 3.76747 3.78898 3.90974 3.96740 4.01222 4.22533 4.30014 4.41084 4.46163 4.46746 4.46877 4.52444 4.54242 4.59732 4.67679 4.69814 4.75726 4.78595 4.79319 4.89831 4.91162 4.96726 5.07217 5.07908 5.12251 5.18942 5.22663 5.23338 5.25183 5.34703 5.43419 5.46285 5.67966 6.19515 6.33806 6.42609 6.82937 6.91059 7.13251 7.69980 8.27355 9.00791 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002433 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.924610 B =11504.478942 C =11730.534715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.104 0.896 4 N -0.707 5.707 5 C 0.520 3.480 6 O -0.574 6.574 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.126 4.126 11 C -0.120 4.120 12 C 0.515 3.485 13 O -0.565 6.565 14 N -0.589 5.589 15 C 0.092 3.908 16 C 0.125 3.875 17 H 0.139 0.861 18 C -0.130 4.130 19 C 0.138 3.862 20 N -0.618 5.618 21 C -0.346 4.346 22 H 0.056 0.944 23 C -0.073 4.073 24 N -0.943 5.943 25 Si 1.112 2.888 26 H -0.293 1.293 27 H -0.279 1.279 28 H -0.281 1.281 29 C 0.120 3.880 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.125 0.875 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.023 0.977 49 H 0.018 0.982 50 H 0.258 0.742 51 H 0.046 0.954 52 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -7.650 -24.448 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.122 0.878 4 N -0.360 5.360 5 C 0.308 3.692 6 O -0.453 6.453 7 C -0.128 4.128 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.163 4.163 11 C -0.158 4.158 12 C 0.303 3.697 13 O -0.445 6.445 14 N -0.320 5.320 15 C -0.051 4.051 16 C 0.021 3.979 17 H 0.156 0.844 18 C -0.168 4.168 19 C 0.013 3.987 20 N -0.346 5.346 21 C -0.474 4.474 22 H 0.074 0.926 23 C -0.270 4.270 24 N -0.585 5.585 25 Si 0.937 3.063 26 H -0.219 1.219 27 H -0.205 1.205 28 H -0.207 1.207 29 C -0.006 4.006 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -2.297 -6.967 -22.846 23.995 hybrid contribution 0.676 -0.538 -0.781 1.164 sum -1.621 -7.504 -23.627 24.843 Atomic orbital electron populations 1.22291 0.90803 1.04162 1.04557 1.20731 0.97242 0.97243 0.82927 0.87823 1.45794 1.67128 1.15043 1.08081 1.21210 0.75944 0.86909 0.85135 1.90666 1.51669 1.17625 1.85356 1.22031 0.99308 0.99773 0.91683 1.22401 0.92504 1.01917 0.98608 1.22514 0.99859 0.97620 0.95634 1.22378 0.94813 0.97693 1.01458 1.22174 0.97960 0.99422 0.96200 1.20864 0.78541 0.85417 0.84881 1.90645 1.45355 1.22063 1.86402 1.47770 1.52669 1.24618 1.06906 1.21649 0.98468 0.97856 0.87120 1.22538 0.91613 0.82614 1.01137 0.84398 1.23149 0.96611 1.03453 0.93635 1.21734 0.90319 0.91106 0.95561 1.44757 1.47023 1.39651 1.03122 1.19941 1.37108 1.01141 0.89254 0.92592 1.26987 0.99601 1.02080 0.98331 1.70903 1.51020 0.99562 1.37038 0.82887 0.77169 0.72585 0.73671 1.21862 1.20456 1.20718 1.21829 0.96407 0.97016 0.85363 0.89253 0.90377 0.90751 0.74657 0.85705 0.93137 0.89101 0.89442 0.91022 0.90035 0.93054 0.89626 0.91792 0.91959 0.91224 0.92254 0.88284 0.88879 0.95953 0.96311 0.93166 0.93608 0.96963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.05 71.98 0.65 -2.34 16 2 C 0.13 2.99 2.13 44.24 0.09 3.08 16 3 H 0.10 2.68 6.97 -2.39 -0.02 2.66 16 4 N -0.71 -14.95 4.94 -446.11 -2.20 -17.16 16 5 C 0.52 11.45 6.96 87.66 0.61 12.06 16 6 O -0.57 -16.78 14.87 -3.03 -0.05 -16.82 16 7 C -0.11 -1.60 3.29 -10.82 -0.04 -1.64 16 8 C -0.12 -1.60 6.30 31.70 0.20 -1.40 16 9 C -0.12 -1.33 6.91 31.91 0.22 -1.11 16 10 C -0.13 -1.69 6.83 31.67 0.22 -1.48 16 11 C -0.12 -1.85 6.40 31.32 0.20 -1.65 16 12 C 0.51 14.71 7.04 87.66 0.62 15.32 16 13 O -0.57 -18.50 15.37 -3.04 -0.05 -18.55 16 14 N -0.59 -17.97 2.83 -815.96 -2.31 -20.28 16 15 C 0.09 3.17 8.46 127.77 1.08 4.26 16 16 C 0.12 3.68 2.61 46.18 0.12 3.80 16 17 H 0.14 3.22 4.20 -2.39 -0.01 3.21 16 18 C -0.13 -3.93 6.40 32.06 0.21 -3.73 16 19 C 0.14 5.98 4.45 86.93 0.39 6.37 16 20 N -0.62 -29.87 2.88 -691.55 -1.99 -31.87 16 21 C -0.35 -19.22 10.02 84.03 0.84 -18.38 16 22 H 0.06 3.14 7.97 -2.91 -0.02 3.11 16 23 C -0.07 -4.14 5.08 84.86 0.43 -3.71 16 24 N -0.94 -56.50 12.92 21.65 0.28 -56.22 16 25 Si 1.11 50.78 30.00 68.60 2.06 52.84 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 29 C 0.12 4.69 6.18 86.73 0.54 5.22 16 30 H 0.09 1.54 5.31 -2.39 -0.01 1.53 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 7.96 7.71 -92.70 -0.71 7.25 16 34 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.05 0.91 7.85 -2.39 -0.02 0.89 16 36 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.37 6.39 -2.39 -0.02 1.35 16 43 H 0.06 2.04 7.70 -2.39 -0.02 2.02 16 44 H 0.07 2.38 7.33 -2.39 -0.02 2.36 16 45 H 0.06 2.48 5.65 -2.38 -0.01 2.46 16 46 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.02 1.05 4.15 -2.39 -0.01 1.04 16 49 H 0.02 0.92 7.94 -2.39 -0.02 0.90 16 50 H 0.26 15.45 6.09 -92.71 -0.56 14.88 16 51 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 52 H 0.01 0.53 8.03 -2.39 -0.02 0.51 16 Total: -1.00 -71.51 394.23 2.53 -68.98 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.41 Total: 24.39 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.38 Total: 14.68 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -6.23 Total: -125.52 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.09 Total: -35.37 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -71.51 2.53 -68.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753436621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.798 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds