Wall clock time and date at job start Tue Mar 31 2020 21:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47115 * 2 1 4 4 C 1.46501 * 119.99741 * 270.00022 * 3 2 1 5 5 C 1.50703 * 109.47182 * 270.00225 * 4 3 2 6 6 H 1.08007 * 120.00045 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00412 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00471 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99789 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47056 * 90.00153 * 9 7 5 11 11 H 1.48500 * 109.47067 * 210.00656 * 9 7 5 12 12 H 1.48502 * 109.47116 * 330.00329 * 9 7 5 13 13 C 1.34776 * 120.00691 * 90.00018 * 3 2 1 14 14 O 1.21274 * 120.00499 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99496 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47355 * 180.02562 * 15 13 3 17 17 C 1.46850 * 110.99813 * 293.95378 * 16 15 13 18 18 C 1.53033 * 109.52490 * 174.15761 * 17 16 15 19 19 C 1.53119 * 109.27787 * 59.17980 * 18 17 16 20 20 C 1.53126 * 109.16048 * 302.34386 * 19 18 17 21 21 H 1.09006 * 109.50177 * 297.71578 * 20 19 18 22 22 C 1.50701 * 109.50316 * 177.59710 * 20 19 18 23 23 O 1.21274 * 119.99512 * 239.99912 * 22 20 19 24 24 N 1.34769 * 120.00063 * 60.00080 * 22 20 19 25 25 C 1.46496 * 119.99985 * 179.97438 * 24 22 20 26 26 C 1.53007 * 117.50132 * 223.74540 * 25 24 22 27 27 C 1.53001 * 117.49860 * 155.08607 * 25 24 22 28 28 C 1.46845 * 111.00565 * 169.74312 * 16 15 13 29 29 H 1.08998 * 109.46792 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46684 * 300.00453 * 1 2 3 31 31 H 1.08998 * 109.47208 * 59.99970 * 1 2 3 32 32 H 1.09001 * 109.47194 * 239.99648 * 2 1 3 33 33 H 1.09000 * 109.47046 * 119.99520 * 2 1 3 34 34 H 1.09002 * 109.47335 * 30.00074 * 4 3 2 35 35 H 1.09001 * 109.47607 * 150.00336 * 4 3 2 36 36 H 0.97000 * 119.99824 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47270 * 59.99824 * 15 13 3 38 38 H 1.09003 * 109.47247 * 299.99768 * 15 13 3 39 39 H 1.09005 * 109.46186 * 54.13967 * 17 16 15 40 40 H 1.09004 * 109.45360 * 294.17122 * 17 16 15 41 41 H 1.09004 * 109.50318 * 299.23790 * 18 17 16 42 42 H 1.08999 * 109.53400 * 179.13825 * 18 17 16 43 43 H 1.08999 * 109.52185 * 182.44278 * 19 18 17 44 44 H 1.08993 * 109.52436 * 62.24928 * 19 18 17 45 45 H 0.96997 * 120.00110 * 0.02562 * 24 22 20 46 46 H 1.08997 * 115.55253 * 9.41933 * 25 24 22 47 47 H 1.09004 * 117.49386 * 0.02562 * 26 25 24 48 48 H 1.08999 * 117.49556 * 145.01601 * 26 25 24 49 49 H 1.09003 * 117.50098 * 214.97873 * 27 25 24 50 50 H 1.09000 * 117.49931 * 359.97438 * 27 25 24 51 51 H 1.08995 * 109.46315 * 65.81881 * 28 16 15 52 52 H 1.09005 * 109.45975 * 305.85394 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3429 1.2308 -1.0959 7 6 4.1494 2.3903 -2.8776 8 7 5.3913 2.1832 -3.2575 9 14 3.0131 3.4358 -3.9289 10 1 3.1158 4.8559 -3.5071 11 1 3.4066 3.3134 -5.3555 12 1 1.6135 2.9692 -3.7597 13 6 2.2430 2.0167 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9924 1.3061 2.4722 16 7 2.3099 2.2064 3.5888 17 6 3.7459 2.5111 3.6270 18 6 4.0174 3.5608 4.7070 19 6 3.5547 3.0219 6.0635 20 6 2.0674 2.6670 5.9824 21 1 1.4898 3.5662 5.7679 22 6 1.6177 2.0806 7.2958 23 8 1.1660 0.9558 7.3346 24 7 1.7176 2.8061 8.4272 25 6 1.2800 2.2363 9.7038 26 6 0.4598 3.1328 10.6336 27 6 1.9119 2.7949 10.9804 28 6 1.8525 1.6432 4.8655 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1386 36 1 5.7175 2.5743 -4.0831 37 1 2.6230 0.4189 2.5298 38 1 0.9445 1.0116 2.5302 39 1 4.0612 2.8974 2.6577 40 1 4.3039 1.6028 3.8549 41 1 3.4705 4.4741 4.4725 42 1 5.0853 3.7759 4.7460 43 1 3.7063 3.7831 6.8288 44 1 4.1286 2.1305 6.3163 45 1 2.0786 3.7059 8.3960 46 1 1.0371 1.1739 9.6858 47 1 0.2454 4.1465 10.2951 48 1 -0.3226 2.6601 11.2274 49 1 2.0843 2.1000 11.8024 50 1 2.6535 3.5861 10.8703 51 1 2.4193 0.7391 5.0875 52 1 0.7924 1.3990 4.7956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051044021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:58 Heat of formation + Delta-G solvation = -40.282488 kcal Electronic energy + Delta-G solvation = -29939.689804 eV Core-core repulsion = 25940.010906 eV Total energy + Delta-G solvation = -3999.678898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57094 -39.44009 -38.12437 -37.19738 -35.32529 -33.94614 -32.86778 -32.55695 -30.97880 -30.31486 -28.58142 -26.64016 -24.68316 -23.40420 -22.94090 -22.86603 -22.16210 -21.81498 -20.89693 -19.76781 -18.32392 -17.46044 -16.95853 -16.88738 -16.49615 -15.84188 -15.42919 -15.17618 -15.03050 -14.93803 -14.45442 -14.31442 -13.99541 -13.76895 -13.53825 -13.43452 -13.13197 -13.00524 -12.83346 -12.68393 -12.40210 -12.11276 -12.07541 -11.94969 -11.78008 -11.63568 -11.48773 -11.30219 -10.99179 -10.94723 -10.89553 -10.83921 -10.56410 -10.52868 -10.45131 -10.12719 -9.92863 -9.52147 -9.14767 -8.91792 -8.57308 -8.13203 -7.66436 -6.07319 -4.05646 2.29620 2.66972 3.30512 3.36406 3.38534 3.40557 3.46260 3.61875 4.15496 4.30699 4.39193 4.41180 4.47096 4.52553 4.59075 4.69095 4.99070 5.04179 5.14889 5.16107 5.26483 5.26733 5.30627 5.34588 5.41493 5.46785 5.50941 5.51461 5.59071 5.60328 5.61919 5.70985 5.79272 5.81541 5.85390 5.95021 6.01988 6.12418 6.17811 6.28967 6.38519 6.43330 6.73024 6.95838 7.07473 7.13608 7.20129 7.40941 7.63685 7.90960 8.31474 8.49252 8.95131 9.06482 9.53526 11.06021 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002257 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.824105 B =12400.719941 C =13091.652025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.039 3.961 16 N -0.520 5.520 17 C 0.046 3.954 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.102 4.102 21 H 0.109 0.891 22 C 0.527 3.473 23 O -0.537 6.537 24 N -0.704 5.704 25 C 0.080 3.920 26 C -0.194 4.194 27 C -0.190 4.190 28 C 0.077 3.923 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.402 0.598 46 H 0.137 0.863 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.097 0.903 51 H 0.041 0.959 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 -0.374 25.037 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.092 4.092 16 N -0.245 5.245 17 C -0.082 4.082 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.123 4.123 21 H 0.127 0.873 22 C 0.313 3.687 23 O -0.413 6.413 24 N -0.354 5.354 25 C -0.027 4.027 26 C -0.233 4.233 27 C -0.229 4.229 28 C -0.051 4.051 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.237 0.763 46 H 0.155 0.845 47 H 0.116 0.884 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.116 0.884 51 H 0.059 0.941 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.001 -0.109 24.783 26.367 hybrid contribution 0.115 0.167 -0.441 0.486 sum -8.886 0.058 24.341 25.913 Atomic orbital electron populations 1.22235 0.96761 1.01556 1.02274 1.21438 0.93426 0.83942 1.03015 1.47942 1.64519 1.13326 1.06974 1.19621 0.97179 0.93402 0.80109 1.21330 0.95357 1.32733 1.07048 0.90865 1.24862 0.94996 0.95856 0.97377 1.69898 1.15153 1.45051 1.23591 0.86846 0.81496 0.81606 0.79707 1.19930 1.21155 1.19083 1.20131 0.78516 0.87039 0.84688 1.90626 1.44718 1.17804 1.86781 1.22015 1.02446 0.94273 0.90428 1.61512 1.17571 1.43921 1.01469 1.22337 0.86673 0.97315 1.01852 1.21531 1.01147 0.99421 0.92777 1.21606 0.93236 1.01191 0.98805 1.21325 0.98653 1.01051 0.91295 0.87311 1.20732 0.77084 0.85549 0.85298 1.90694 1.44890 1.19015 1.86698 1.45415 1.65111 1.18688 1.06223 1.21603 1.02364 0.98276 0.80407 1.23443 0.94683 1.01506 1.03675 1.23389 0.96316 1.04137 0.99017 1.21784 1.01315 0.94374 0.87625 0.92019 0.92916 0.92216 0.89765 0.91561 0.95367 0.94588 0.92619 0.92303 0.88438 0.87719 0.95519 0.90516 0.91053 0.91576 0.91688 0.76273 0.84512 0.88436 0.87990 0.87877 0.88416 0.94095 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.59 -12.13 2.46 -175.06 -0.43 -12.56 16 4 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 5 C -0.53 -15.03 9.94 -34.44 -0.34 -15.38 16 6 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 9 Si 0.88 21.64 27.47 -169.99 -4.67 16.98 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.51 10.30 7.35 -10.99 -0.08 10.21 16 14 O -0.52 -12.56 13.92 5.56 0.08 -12.49 16 15 C 0.04 0.60 4.00 -4.98 -0.02 0.58 16 16 N -0.52 -7.66 4.39 -236.11 -1.04 -8.69 16 17 C 0.05 0.68 5.11 -3.83 -0.02 0.66 16 18 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 19 C -0.11 -1.01 5.16 -26.60 -0.14 -1.15 16 20 C -0.10 -1.03 2.69 -91.69 -0.25 -1.28 16 21 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 22 C 0.53 5.58 7.16 -10.99 -0.08 5.50 16 23 O -0.54 -7.63 15.55 5.56 0.09 -7.54 16 24 N -0.70 -5.39 5.47 -53.81 -0.29 -5.68 16 25 C 0.08 0.58 6.43 -67.93 -0.44 0.15 16 26 C -0.19 -1.07 10.46 -26.69 -0.28 -1.35 16 27 C -0.19 -0.98 10.46 -26.69 -0.28 -1.26 16 28 C 0.08 0.96 4.03 -3.84 -0.02 0.95 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.06 0.84 7.38 -51.93 -0.38 0.46 16 38 H 0.10 1.29 7.03 -51.93 -0.36 0.92 16 39 H 0.10 1.97 5.80 -51.93 -0.30 1.67 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.44 7.65 -51.93 -0.40 0.05 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.40 2.11 8.30 -40.82 -0.34 1.77 16 46 H 0.14 1.21 7.40 -51.93 -0.38 0.82 16 47 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 52 H 0.08 1.01 7.99 -51.93 -0.41 0.59 16 LS Contribution 409.98 15.07 6.18 6.18 Total: -1.00 -35.27 409.98 -10.27 -45.54 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -9.10 Total: 1.85 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.86 Total: 3.30 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.99 Total: -53.82 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.16 Total: -20.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.27 -10.27 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051044021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.260 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds