Wall clock time and date at job start Tue Mar 31 2020 20:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.53003 * 109.47207 * 239.99972 * 2 1 3 5 5 N 1.46495 * 109.47421 * 119.99866 * 2 1 3 6 6 C 1.45755 * 117.94839 * 239.89994 * 5 2 1 7 7 C 1.52927 * 110.48471 * 199.07336 * 6 5 2 8 8 C 1.53326 * 108.68774 * 309.25156 * 7 6 5 9 9 C 1.53070 * 108.43582 * 67.50996 * 8 7 6 10 10 H 1.09000 * 109.33154 * 71.19125 * 9 8 7 11 11 C 1.50701 * 109.40185 * 190.97979 * 9 8 7 12 12 O 1.21283 * 119.99767 * 0.43194 * 11 9 8 13 13 N 1.34774 * 119.99812 * 180.42644 * 11 9 8 14 14 C 1.46506 * 119.99647 * 180.02562 * 13 11 9 15 15 H 1.08997 * 112.84813 * 23.80459 * 14 13 11 16 16 C 1.53781 * 113.61030 * 155.00352 * 14 13 11 17 17 C 1.53781 * 87.07997 * 89.11587 * 16 14 13 18 18 H 1.08996 * 113.61450 * 270.79464 * 17 16 14 19 19 N 1.46507 * 113.61059 * 139.97910 * 17 16 14 20 20 C 1.36939 * 119.99805 * 154.99730 * 19 17 16 21 21 H 1.08002 * 119.99827 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00064 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00027 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00239 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47494 * 180.02562 * 24 22 20 26 26 H 1.48509 * 109.46868 * 300.00374 * 24 22 20 27 27 H 1.48494 * 109.46961 * 59.99743 * 24 22 20 28 28 C 1.53774 * 113.61355 * 252.49852 * 14 13 11 29 29 C 1.33357 * 117.94551 * 59.87051 * 5 2 1 30 30 O 1.21282 * 118.24536 * 357.78354 * 29 5 2 31 31 H 1.09000 * 109.46857 * 293.23771 * 1 2 3 32 32 H 1.08999 * 109.47292 * 53.24140 * 1 2 3 33 33 H 1.08999 * 109.46620 * 173.24129 * 1 2 3 34 34 H 1.08999 * 109.47138 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47072 * 300.00054 * 3 2 1 36 36 H 1.09002 * 109.46933 * 59.99602 * 3 2 1 37 37 H 1.08993 * 109.47418 * 299.99905 * 4 2 1 38 38 H 1.09001 * 109.47038 * 59.99917 * 4 2 1 39 39 H 1.09005 * 109.47023 * 179.97438 * 4 2 1 40 40 H 1.09003 * 109.29870 * 319.38036 * 6 5 2 41 41 H 1.09001 * 109.30361 * 78.75881 * 6 5 2 42 42 H 1.08995 * 109.60673 * 69.00476 * 7 6 5 43 43 H 1.08998 * 109.60080 * 189.48796 * 7 6 5 44 44 H 1.09004 * 109.66120 * 307.78216 * 8 7 6 45 45 H 1.08998 * 109.67462 * 187.25054 * 8 7 6 46 46 H 0.96997 * 120.00128 * 359.97438 * 13 11 9 47 47 H 1.08992 * 113.61867 * 334.56305 * 16 14 13 48 48 H 1.09004 * 113.68819 * 203.67665 * 16 14 13 49 49 H 0.97001 * 120.00356 * 334.99703 * 19 17 16 50 50 H 0.96995 * 119.99648 * 179.97438 * 23 22 20 51 51 H 1.08997 * 113.61536 * 156.33709 * 28 14 13 52 52 H 1.09003 * 113.61988 * 25.43374 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6905 1.1961 6 6 2.8549 0.0598 2.1244 7 6 3.6426 -0.8928 3.0249 8 6 2.6692 -1.9058 3.6391 9 6 2.1382 -2.8062 2.5209 10 1 2.9337 -3.4711 2.1845 11 6 0.9871 -3.6268 3.0431 12 8 0.6227 -3.4977 4.1926 13 7 0.3626 -4.5040 2.2326 14 6 -0.7568 -5.3014 2.7401 15 1 -1.2526 -4.8396 3.5938 16 6 -1.7274 -5.7689 1.6427 17 6 -0.8373 -7.0143 1.4958 18 1 -0.0275 -6.8899 0.7771 19 7 -1.5915 -8.2541 1.2942 20 6 -1.0064 -9.3154 0.6566 21 1 0.0111 -9.2386 0.3028 22 6 -1.7207 -10.4902 0.4660 23 7 -2.9607 -10.5839 0.8976 24 14 -0.9224 -11.9382 -0.4031 25 1 -1.8885 -13.0634 -0.4799 26 1 -0.5243 -11.5336 -1.7755 27 1 0.2801 -12.3684 0.3544 28 6 -0.4095 -6.7839 2.9548 29 6 1.6692 -1.9661 1.3677 30 8 0.9341 -2.4751 0.5483 31 1 -0.3633 0.4055 0.9443 32 1 -0.3634 0.6150 -0.8233 33 1 -0.3632 -1.0205 -0.1209 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6768 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1301 -0.7208 -1.2495 40 1 3.5511 0.6809 1.5607 41 1 2.2241 0.6998 2.7413 42 1 4.3925 -1.4185 2.4339 43 1 4.1301 -0.3265 3.8184 44 1 1.8399 -1.3782 4.1104 45 1 3.1894 -2.5108 4.3816 46 1 0.6538 -4.6069 1.3131 47 1 -1.7309 -5.1283 0.7609 48 1 -2.7299 -5.9894 2.0096 49 1 -2.5053 -8.3232 1.6123 50 1 -3.4599 -11.4047 0.7641 51 1 -1.0511 -7.2818 3.6818 52 1 0.6510 -6.9628 3.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020498577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:23 Heat of formation + Delta-G solvation = -38.270413 kcal Electronic energy + Delta-G solvation = -30726.264622 eV Core-core repulsion = 26726.672974 eV Total energy + Delta-G solvation = -3999.591648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55204 -39.72463 -38.02274 -37.12682 -36.10668 -33.92900 -32.55461 -31.85593 -30.35103 -29.69676 -28.05644 -27.50522 -25.31892 -25.02172 -24.26205 -23.16125 -22.22768 -21.32421 -20.31520 -18.82785 -18.55792 -17.67307 -17.09983 -16.91721 -16.51649 -15.88058 -15.48892 -15.31337 -14.85242 -14.55045 -14.37213 -14.15264 -13.85900 -13.83285 -13.75226 -13.50762 -13.46625 -12.70707 -12.59669 -12.50882 -12.46690 -12.24779 -11.97327 -11.87968 -11.77777 -11.75442 -11.59170 -11.49310 -11.43213 -11.22617 -11.16320 -10.85076 -10.72523 -10.23608 -10.19895 -9.88830 -9.83680 -9.58584 -9.47989 -8.97112 -8.84552 -8.64757 -6.92909 -5.75303 -3.03919 2.19940 2.44700 2.84972 3.31462 3.45402 3.49599 3.50771 4.07622 4.30331 4.31840 4.39646 4.56601 4.57673 4.61609 4.70154 4.83833 4.93648 4.95871 5.07188 5.14292 5.17781 5.27001 5.31557 5.37341 5.42513 5.45810 5.48148 5.52133 5.52845 5.57975 5.63724 5.67611 5.72073 5.88711 5.94820 6.01094 6.03383 6.15741 6.22347 6.34522 6.37776 6.41971 6.62520 6.71587 6.78739 7.13824 7.16561 7.70926 7.72135 7.88959 8.35607 8.43373 9.54289 10.12495 10.47216 11.47124 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.002498 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.421285 B =11206.875854 C =11868.520283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 C -0.155 4.155 4 C -0.164 4.164 5 N -0.591 5.591 6 C 0.106 3.894 7 C -0.137 4.137 8 C -0.104 4.104 9 C -0.127 4.127 10 H 0.128 0.872 11 C 0.531 3.469 12 O -0.543 6.543 13 N -0.687 5.687 14 C 0.115 3.885 15 H 0.093 0.907 16 C -0.159 4.159 17 C 0.167 3.833 18 H 0.073 0.927 19 N -0.712 5.712 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 C -0.175 4.175 29 C 0.528 3.472 30 O -0.530 6.530 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.409 0.591 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.386 0.614 50 H 0.256 0.744 51 H 0.085 0.915 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.627 28.147 1.219 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 C -0.213 4.213 4 C -0.221 4.221 5 N -0.325 5.325 6 C -0.017 4.017 7 C -0.174 4.174 8 C -0.142 4.142 9 C -0.151 4.151 10 H 0.145 0.855 11 C 0.315 3.685 12 O -0.421 6.421 13 N -0.337 5.337 14 C 0.010 3.990 15 H 0.111 0.889 16 C -0.198 4.198 17 C 0.055 3.945 18 H 0.091 0.909 19 N -0.350 5.350 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.213 1.213 28 C -0.217 4.217 29 C 0.316 3.684 30 O -0.407 6.407 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.246 0.754 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.220 0.780 50 H 0.066 0.934 51 H 0.104 0.896 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.054 27.791 1.493 31.178 hybrid contribution 0.379 -0.862 -0.709 1.178 sum 14.433 26.929 0.784 30.563 Atomic orbital electron populations 1.22253 0.93763 1.04622 1.01508 1.20484 0.94836 0.91751 0.84804 1.22197 1.01404 0.94633 1.03018 1.22232 1.00596 1.03282 0.96039 1.47424 1.50676 1.10881 1.23497 1.21555 0.93806 0.94681 0.91631 1.21939 0.98172 0.97809 0.99521 1.21500 0.99654 0.96804 0.96265 1.21514 0.99292 0.98087 0.96239 0.85455 1.19703 0.83004 0.79981 0.85844 1.90695 1.65548 1.67887 1.17944 1.45720 1.33471 1.39273 1.15249 1.21818 0.87661 0.91641 0.97899 0.88893 1.23829 0.99100 0.99057 0.97856 1.21613 0.93649 0.86013 0.93220 0.90861 1.42399 1.14485 1.09807 1.68304 1.19258 0.97008 0.91769 1.29407 0.91194 1.24762 0.96238 0.98257 1.01674 1.69652 1.09432 1.27371 1.51647 0.86264 0.78102 0.82322 0.79476 1.21690 1.21249 1.21267 1.24294 1.01138 0.93793 1.02470 1.19477 0.80713 0.81853 0.86397 1.90663 1.35862 1.70432 1.43784 0.92958 0.92038 0.89536 0.91801 0.90987 0.91841 0.89758 0.91824 0.92963 0.90017 0.91558 0.90800 0.89249 0.89940 0.89816 0.75433 0.91534 0.89199 0.78037 0.93423 0.89612 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.24 37.16 0.31 -1.24 16 2 C 0.16 1.32 1.03 -131.82 -0.14 1.18 16 3 C -0.16 -0.80 7.31 37.16 0.27 -0.53 16 4 C -0.16 -1.38 8.36 37.16 0.31 -1.07 16 5 N -0.59 -4.94 2.79 -160.07 -0.45 -5.38 16 6 C 0.11 0.58 5.24 -4.48 -0.02 0.56 16 7 C -0.14 -0.69 6.02 -26.60 -0.16 -0.85 16 8 C -0.10 -0.86 4.78 -26.53 -0.13 -0.98 16 9 C -0.13 -1.31 2.78 -93.14 -0.26 -1.57 16 10 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 11 C 0.53 7.65 7.06 -10.99 -0.08 7.57 16 12 O -0.54 -9.44 15.39 5.55 0.09 -9.35 16 13 N -0.69 -10.23 4.75 -53.02 -0.25 -10.48 16 14 C 0.12 1.92 4.32 -67.12 -0.29 1.63 16 15 H 0.09 1.61 7.46 -51.93 -0.39 1.22 16 16 C -0.16 -2.78 7.58 -25.92 -0.20 -2.98 16 17 C 0.17 3.41 4.36 -67.12 -0.29 3.12 16 18 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 19 N -0.71 -18.22 5.40 -52.64 -0.28 -18.50 16 20 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C -0.17 -3.25 7.68 -25.92 -0.20 -3.45 16 29 C 0.53 5.74 6.45 -11.87 -0.08 5.66 16 30 O -0.53 -7.07 10.32 5.56 0.06 -7.01 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.06 6.05 -51.93 -0.31 0.75 16 34 H 0.06 0.27 6.74 -51.93 -0.35 -0.08 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.30 7.63 -51.93 -0.40 -0.09 16 37 H 0.08 0.93 6.01 -51.93 -0.31 0.62 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.31 6.02 -51.93 -0.31 0.00 16 41 H 0.07 0.34 8.04 -51.93 -0.42 -0.07 16 42 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.81 7.72 -51.93 -0.40 0.40 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.41 5.84 7.36 -40.82 -0.30 5.54 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.59 8.12 -51.93 -0.42 1.17 16 49 H 0.39 10.43 7.92 -40.82 -0.32 10.11 16 50 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 52 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -33.45 400.24 -9.28 -42.72 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -8.97 Total: 12.61 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.19 Total: -0.44 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.26 Total: -62.16 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.14 Total: -16.37 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.45 -9.28 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020498577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.454 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds