Wall clock time and date at job start Tue Mar 31 2020 20:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47065 * 240.00523 * 2 1 3 5 5 N 1.46492 * 109.47434 * 120.00085 * 2 1 3 6 6 C 1.45755 * 117.94844 * 238.28339 * 5 2 1 7 7 C 1.52917 * 110.48720 * 160.92423 * 6 5 2 8 8 C 1.53290 * 108.61198 * 50.77335 * 7 6 5 9 9 C 1.53070 * 108.45294 * 292.37259 * 8 7 6 10 10 H 1.09009 * 109.40061 * 288.92954 * 9 8 7 11 11 C 1.50699 * 109.40164 * 169.10571 * 9 8 7 12 12 O 1.21292 * 119.99700 * 359.82386 * 11 9 8 13 13 N 1.34776 * 120.00258 * 179.82833 * 11 9 8 14 14 C 1.46499 * 119.99630 * 179.97438 * 13 11 9 15 15 H 1.08996 * 112.85388 * 23.80008 * 14 13 11 16 16 C 1.53787 * 113.61001 * 155.00230 * 14 13 11 17 17 C 1.53783 * 87.08208 * 89.19464 * 16 14 13 18 18 H 1.09002 * 113.60805 * 140.06275 * 17 16 14 19 19 N 1.46501 * 113.61271 * 270.87938 * 17 16 14 20 20 C 1.36935 * 119.99600 * 203.47162 * 19 17 16 21 21 H 1.07996 * 120.00416 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99440 * 179.73120 * 20 19 17 23 23 N 1.31615 * 120.00109 * 0.27124 * 22 20 19 24 24 Si 1.86806 * 119.99637 * 180.27705 * 22 20 19 25 25 H 1.48495 * 109.47219 * 89.99975 * 24 22 20 26 26 H 1.48501 * 109.46824 * 209.99411 * 24 22 20 27 27 H 1.48497 * 109.47171 * 329.99553 * 24 22 20 28 28 C 1.53775 * 87.17365 * 25.47651 * 17 16 14 29 29 C 1.33354 * 117.94493 * 58.30249 * 5 2 1 30 30 O 1.21276 * 118.24849 * 2.22763 * 29 5 2 31 31 H 1.08998 * 109.46995 * 293.28367 * 1 2 3 32 32 H 1.08999 * 109.47469 * 53.28843 * 1 2 3 33 33 H 1.09007 * 109.46737 * 173.28390 * 1 2 3 34 34 H 1.08992 * 109.47512 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47171 * 300.00623 * 3 2 1 36 36 H 1.08995 * 109.46911 * 59.99829 * 3 2 1 37 37 H 1.09005 * 109.47321 * 299.99647 * 4 2 1 38 38 H 1.09003 * 109.47748 * 59.99394 * 4 2 1 39 39 H 1.09007 * 109.47410 * 179.97438 * 4 2 1 40 40 H 1.09003 * 109.29644 * 281.23369 * 6 5 2 41 41 H 1.09001 * 109.30097 * 40.81323 * 6 5 2 42 42 H 1.08999 * 109.60190 * 170.50765 * 7 6 5 43 43 H 1.08993 * 109.60212 * 290.99351 * 7 6 5 44 44 H 1.09007 * 109.59863 * 172.66591 * 8 7 6 45 45 H 1.09003 * 109.72069 * 52.15082 * 8 7 6 46 46 H 0.96989 * 119.99797 * 359.97438 * 13 11 9 47 47 H 1.09000 * 113.61649 * 334.64537 * 16 14 13 48 48 H 1.09005 * 113.68636 * 203.75766 * 16 14 13 49 49 H 0.96994 * 119.99803 * 23.47977 * 19 17 16 50 50 H 0.97008 * 119.99606 * 180.02562 * 23 22 20 51 51 H 1.09003 * 113.62235 * 89.07275 * 28 17 16 52 52 H 1.09003 * 113.61375 * 219.98087 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.8843 0.0488 2.1060 7 6 2.9110 -0.6198 3.4811 8 6 3.2188 -2.1099 3.2947 9 6 2.0295 -2.7656 2.5885 10 1 1.1847 -2.8184 3.2753 11 6 2.4101 -4.1579 2.1552 12 8 3.5230 -4.5817 2.3855 13 7 1.5140 -4.9321 1.5118 14 6 1.8843 -6.2854 1.0902 15 1 2.7019 -6.7029 1.6777 16 6 0.6836 -7.2349 0.9433 17 6 0.5815 -6.7536 -0.5137 18 1 0.3460 -7.5491 -1.2208 19 7 -0.2677 -5.5719 -0.6832 20 6 -0.8430 -5.3109 -1.8981 21 1 -0.6710 -5.9762 -2.7312 22 6 -1.6521 -4.1942 -2.0572 23 7 -1.8620 -3.3836 -1.0418 24 14 -2.4432 -3.8422 -3.7125 25 1 -3.7702 -4.5055 -3.7780 26 1 -2.6138 -2.3764 -3.8778 27 1 -1.5744 -4.3650 -4.7975 28 6 2.0820 -6.4273 -0.4310 29 6 1.6431 -1.9564 1.3838 30 8 0.9527 -2.4821 0.5367 31 1 -0.3633 0.4062 0.9440 32 1 -0.3634 0.6143 -0.8238 33 1 -0.3633 -1.0207 -0.1202 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6767 -1.7489 -1.2494 38 1 1.6766 -0.2073 -2.1393 39 1 3.1300 -0.7208 -1.2496 40 1 3.8951 0.0760 1.6990 41 1 2.5106 1.0673 2.2111 42 1 3.6849 -0.1604 4.0960 43 1 1.9404 -0.5034 3.9631 44 1 3.3703 -2.5765 4.2681 45 1 4.1163 -2.2269 2.6873 46 1 0.6240 -4.5933 1.3279 47 1 -0.1726 -6.9545 1.5568 48 1 0.9448 -8.2890 1.0377 49 1 -0.4223 -4.9745 0.0651 50 1 -2.4278 -2.6034 -1.1530 51 1 2.7263 -7.2606 -0.7117 52 1 2.3540 -5.4952 -0.9262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022581021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:28 Heat of formation + Delta-G solvation = -25.799784 kcal Electronic energy + Delta-G solvation = -32736.835843 eV Core-core repulsion = 28737.784963 eV Total energy + Delta-G solvation = -3999.050881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00223 -39.47774 -37.87974 -36.48370 -35.65592 -33.42229 -32.41924 -31.37134 -29.89410 -29.54972 -27.54730 -26.81772 -24.99933 -24.98575 -24.03390 -22.71678 -22.35564 -20.69777 -19.81639 -18.70842 -17.99333 -17.43016 -16.87462 -16.42532 -15.93413 -15.54668 -15.08273 -14.72099 -14.59109 -14.32230 -14.00455 -13.91855 -13.57251 -13.41038 -13.18788 -13.13952 -12.99811 -12.80769 -12.21867 -11.97562 -11.94443 -11.90060 -11.78332 -11.68254 -11.41275 -11.24885 -11.14270 -11.09938 -10.98077 -10.80164 -10.68550 -10.65176 -10.54733 -10.10733 -10.02314 -9.71672 -9.45256 -9.44336 -8.92041 -8.74944 -8.37902 -8.31588 -6.83259 -5.61858 -2.91013 2.70923 3.04673 3.30959 3.48449 3.54459 3.55128 3.66601 4.54089 4.65671 4.69690 4.73651 4.76035 5.09550 5.12697 5.17868 5.23416 5.24817 5.34246 5.35563 5.40275 5.49163 5.61366 5.64861 5.66795 5.68370 5.73827 5.86467 5.92116 5.98259 6.02056 6.05984 6.10045 6.13645 6.19543 6.23991 6.28047 6.37666 6.38601 6.43348 6.71355 6.75214 6.85434 6.96605 6.98584 7.12991 7.27753 7.77051 7.83093 8.07746 8.51867 8.60550 8.69980 9.64660 10.21103 10.55307 11.57260 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.005988 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.061614 B = 4674.801547 C = 7069.562219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.172 3.828 3 C -0.153 4.153 4 C -0.162 4.162 5 N -0.596 5.596 6 C 0.110 3.890 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.126 4.126 10 H 0.122 0.878 11 C 0.532 3.468 12 O -0.555 6.555 13 N -0.681 5.681 14 C 0.122 3.878 15 H 0.088 0.912 16 C -0.168 4.168 17 C 0.166 3.834 18 H 0.062 0.938 19 N -0.698 5.698 20 C -0.247 4.247 21 H 0.067 0.933 22 C -0.001 4.001 23 N -0.906 5.906 24 Si 0.898 3.102 25 H -0.293 1.293 26 H -0.293 1.293 27 H -0.285 1.285 28 C -0.187 4.187 29 C 0.505 3.495 30 O -0.471 6.471 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.417 0.583 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.384 0.616 50 H 0.251 0.749 51 H 0.072 0.928 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.155 7.724 9.717 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.089 3.911 3 C -0.210 4.210 4 C -0.220 4.220 5 N -0.332 5.332 6 C -0.014 4.014 7 C -0.173 4.173 8 C -0.139 4.139 9 C -0.150 4.150 10 H 0.140 0.860 11 C 0.317 3.683 12 O -0.434 6.434 13 N -0.335 5.335 14 C 0.016 3.984 15 H 0.106 0.894 16 C -0.208 4.208 17 C 0.053 3.947 18 H 0.080 0.920 19 N -0.339 5.339 20 C -0.378 4.378 21 H 0.085 0.915 22 C -0.198 4.198 23 N -0.553 5.553 24 Si 0.730 3.270 25 H -0.221 1.221 26 H -0.220 1.220 27 H -0.211 1.211 28 C -0.229 4.229 29 C 0.290 3.710 30 O -0.343 6.343 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.258 0.742 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.220 0.780 50 H 0.061 0.939 51 H 0.091 0.909 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.422 7.162 9.236 15.013 hybrid contribution -0.783 0.838 -0.704 1.346 sum 8.639 8.001 8.532 14.541 Atomic orbital electron populations 1.22305 0.93327 1.06534 1.00317 1.20380 0.95002 0.90899 0.84868 1.22189 1.01109 0.95369 1.02370 1.22227 0.99642 1.04373 0.95778 1.47332 1.50004 1.11943 1.23959 1.21435 0.94311 0.96159 0.89461 1.21909 1.03022 0.95853 0.96518 1.21453 0.97086 0.94002 1.01370 1.21474 1.01898 0.93705 0.97907 0.86029 1.19787 0.84842 0.85990 0.77725 1.90646 1.21073 1.74283 1.57435 1.45916 1.17318 1.14316 1.55913 1.21810 0.97757 0.82395 0.96390 0.89427 1.23851 0.97714 0.98676 1.00529 1.21158 0.89520 0.90861 0.93155 0.92018 1.42162 1.54899 1.24983 1.11811 1.19117 1.22841 1.06903 0.88921 0.91519 1.24651 1.00571 0.97708 0.96898 1.69677 1.41299 1.15294 1.28981 0.86348 0.79286 0.76997 0.84388 1.22067 1.21985 1.21076 1.24331 1.01536 1.01723 0.95306 1.19493 0.81645 0.81968 0.87926 1.91010 1.34579 1.67454 1.41247 0.93785 0.92791 0.87170 0.92312 0.91364 0.92166 0.88687 0.92464 0.93832 0.92195 0.90514 0.89761 0.90952 0.90435 0.90193 0.74213 0.91267 0.89347 0.77995 0.93934 0.90904 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 8.22 37.16 0.31 -2.45 16 2 C 0.17 2.49 1.03 -131.82 -0.14 2.35 16 3 C -0.15 -1.63 7.28 37.16 0.27 -1.36 16 4 C -0.16 -2.71 8.38 37.16 0.31 -2.39 16 5 N -0.60 -8.26 2.79 -160.09 -0.45 -8.70 16 6 C 0.11 1.09 5.23 -4.49 -0.02 1.07 16 7 C -0.14 -1.19 6.02 -26.62 -0.16 -1.35 16 8 C -0.10 -1.18 4.77 -26.54 -0.13 -1.31 16 9 C -0.13 -1.84 2.78 -93.14 -0.26 -2.10 16 10 H 0.12 1.58 8.14 -51.92 -0.42 1.16 16 11 C 0.53 9.55 7.06 -10.99 -0.08 9.47 16 12 O -0.56 -11.02 15.39 5.55 0.09 -10.94 16 13 N -0.68 -12.79 4.62 -52.87 -0.24 -13.03 16 14 C 0.12 2.20 4.33 -66.97 -0.29 1.91 16 15 H 0.09 1.54 7.46 -51.93 -0.39 1.16 16 16 C -0.17 -2.86 7.58 -25.91 -0.20 -3.06 16 17 C 0.17 3.40 4.55 -67.12 -0.31 3.09 16 18 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 19 N -0.70 -17.29 5.17 -52.64 -0.27 -17.57 16 20 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 23 N -0.91 -25.79 13.06 55.49 0.72 -25.07 16 24 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 28 C -0.19 -3.59 7.70 -25.78 -0.20 -3.78 16 29 C 0.50 8.39 6.45 -11.87 -0.08 8.31 16 30 O -0.47 -9.74 10.30 5.56 0.06 -9.69 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 2.34 6.08 -51.92 -0.32 2.02 16 34 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.56 6.81 -51.93 -0.35 0.21 16 37 H 0.09 2.02 5.97 -51.93 -0.31 1.71 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 41 H 0.08 0.64 6.00 -51.93 -0.31 0.33 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 46 H 0.42 8.51 4.81 -40.82 -0.20 8.32 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.38 9.84 5.36 -40.82 -0.22 9.62 16 50 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 52 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -31.34 395.02 -9.14 -40.48 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -8.77 Total: 19.90 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.21 Total: 1.32 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.24 Total: -64.37 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.14 Total: -20.62 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.34 -9.14 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022581021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.680 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds