Wall clock time and date at job start Tue Mar 31 2020 19:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47345 * 2 1 4 4 C 1.47009 * 111.00133 * 46.36585 * 3 2 1 5 5 C 1.53090 * 109.26179 * 182.39424 * 4 3 2 6 6 O 1.43023 * 109.25731 * 303.15246 * 5 4 3 7 7 C 1.43013 * 113.73902 * 58.66908 * 6 5 4 8 8 C 1.47009 * 111.00104 * 170.00249 * 3 2 1 9 9 H 1.08999 * 109.50613 * 297.54071 * 8 3 2 10 10 C 1.50702 * 109.50781 * 57.67082 * 8 3 2 11 11 O 1.21280 * 120.00226 * 25.22908 * 10 8 3 12 12 N 1.34776 * 119.99815 * 205.22658 * 10 8 3 13 13 C 1.46877 * 120.47129 * 4.59150 * 12 10 8 14 14 C 1.52857 * 109.02107 * 235.48618 * 13 12 10 15 15 C 1.52670 * 109.17371 * 307.81723 * 14 13 12 16 16 C 1.53483 * 113.62192 * 188.99359 * 15 14 13 17 17 N 1.47663 * 85.98710 * 137.70710 * 16 15 14 18 18 C 1.36941 * 134.45842 * 155.71649 * 17 16 15 19 19 H 1.08003 * 120.00127 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00121 * 359.95374 * 18 17 16 21 21 N 1.31624 * 120.00002 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00217 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47016 * 59.99645 * 22 20 18 24 24 H 1.48500 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47085 * 299.99744 * 22 20 18 26 26 C 1.47668 * 91.08669 * 335.67795 * 17 16 15 27 27 C 1.52673 * 113.18608 * 57.46096 * 15 14 13 28 28 C 1.46888 * 120.46077 * 184.86457 * 12 10 8 29 29 H 1.08994 * 109.47599 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47142 * 300.00289 * 1 2 3 31 31 H 1.09006 * 109.47419 * 59.99827 * 1 2 3 32 32 H 1.09002 * 109.46697 * 239.99998 * 2 1 3 33 33 H 1.08998 * 109.47093 * 120.00103 * 2 1 3 34 34 H 1.09003 * 109.50801 * 302.33050 * 4 3 2 35 35 H 1.09000 * 109.50609 * 62.41449 * 4 3 2 36 36 H 1.09002 * 109.50733 * 63.08428 * 5 4 3 37 37 H 1.08996 * 109.51150 * 183.17298 * 5 4 3 38 38 H 1.08995 * 109.50747 * 181.39663 * 7 6 5 39 39 H 1.08992 * 109.50831 * 61.26249 * 7 6 5 40 40 H 1.09009 * 109.58537 * 355.31134 * 13 12 10 41 41 H 1.09000 * 109.59422 * 115.74266 * 13 12 10 42 42 H 1.08999 * 109.61321 * 187.83540 * 14 13 12 43 43 H 1.09004 * 109.38648 * 67.65376 * 14 13 12 44 44 H 1.09005 * 113.79219 * 251.97082 * 16 15 14 45 45 H 1.09000 * 113.79226 * 23.43823 * 16 15 14 46 46 H 0.96995 * 120.00487 * 180.02562 * 21 20 18 47 47 H 1.08992 * 113.79415 * 270.05038 * 26 17 16 48 48 H 1.09003 * 113.78801 * 138.57980 * 26 17 16 49 49 H 1.09001 * 109.52642 * 182.51853 * 27 15 14 50 50 H 1.08998 * 109.53543 * 62.29766 * 27 15 14 51 51 H 1.09003 * 109.58578 * 244.25630 * 28 12 10 52 52 H 1.08997 * 109.58816 * 4.54617 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3025 2.1974 0.9933 5 6 1.8009 3.6430 0.9183 6 8 3.2165 3.6649 1.1212 7 6 3.9465 2.8844 0.1708 8 6 3.4696 1.4311 0.2383 9 1 3.6897 1.0212 1.2240 10 6 4.1788 0.6194 -0.8150 11 8 3.6595 0.4435 -1.8968 12 7 5.3902 0.0891 -0.5548 13 6 5.9844 0.2100 0.7829 14 6 7.3621 0.8606 0.6591 15 6 8.1855 0.0982 -0.3761 16 6 9.6586 0.5261 -0.4265 17 7 9.9657 -0.9143 -0.5327 18 6 11.0144 -1.6369 -1.0361 19 1 10.9978 -2.7158 -0.9910 20 6 12.0985 -0.9826 -1.6047 21 7 12.1184 0.3323 -1.6605 22 14 13.5294 -1.9682 -2.2908 23 1 13.0418 -2.8614 -3.3724 24 1 14.5517 -1.0408 -2.8385 25 1 14.1318 -2.7859 -1.2074 26 6 8.6892 -1.2635 0.1225 27 6 7.5187 0.0376 -1.7482 28 6 6.1373 -0.6128 -1.6068 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2333 2.1697 0.7827 35 1 1.4873 1.7993 1.9910 36 1 1.5673 4.0582 -0.0620 37 1 1.3127 4.2369 1.6909 38 1 5.0104 2.9295 0.4033 39 1 3.7753 3.2775 -0.8312 40 1 5.3449 0.8291 1.4123 41 1 6.0896 -0.7799 1.2270 42 1 7.8695 0.8292 1.6233 43 1 7.2457 1.8966 0.3409 44 1 9.9201 1.0981 -1.3168 45 1 10.0150 0.9849 0.4957 46 1 12.8757 0.7896 -2.0581 47 1 8.7575 -1.3365 1.2078 48 1 8.1801 -2.1137 -0.3315 49 1 8.1330 -0.5553 -2.4259 50 1 7.4075 1.0469 -2.1443 51 1 6.2534 -1.6619 -1.3346 52 1 5.5973 -0.5377 -2.5506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035740593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:28 Heat of formation + Delta-G solvation = -2.971278 kcal Electronic energy + Delta-G solvation = -31398.062432 eV Core-core repulsion = 27400.001470 eV Total energy + Delta-G solvation = -3998.060962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97753 -39.61559 -38.39518 -36.47081 -35.68606 -32.73360 -32.23063 -31.00869 -30.83653 -30.29825 -27.17332 -26.80779 -25.25585 -24.93857 -23.58608 -23.12893 -22.36566 -21.41794 -20.76182 -19.34120 -17.92412 -17.05112 -16.81020 -16.73141 -16.59377 -15.78932 -15.47025 -15.25788 -14.89415 -14.78892 -14.65411 -14.43309 -14.27614 -14.02567 -13.78445 -13.53698 -13.13110 -13.07447 -12.58787 -12.42289 -12.34826 -12.16562 -12.11233 -11.83207 -11.73717 -11.66637 -11.21302 -11.08347 -11.04147 -10.88885 -10.86146 -10.82991 -10.39126 -10.18591 -10.12651 -9.72504 -9.69228 -9.49266 -9.35476 -8.77954 -8.62144 -8.45418 -6.85561 -5.75524 -3.07378 2.51318 2.84563 3.39582 3.41391 3.43926 3.45066 3.62304 4.33832 4.46126 4.49265 4.61391 4.63356 4.76531 4.84509 4.91265 4.97442 5.01554 5.07637 5.17579 5.19686 5.23480 5.28855 5.32177 5.39024 5.43344 5.48168 5.51133 5.58040 5.60728 5.68358 5.81938 5.85247 5.86235 5.89701 5.94002 6.15697 6.25055 6.29155 6.41549 6.53719 6.60866 6.63853 6.66015 6.76822 6.79910 6.86966 7.23900 7.37539 7.43372 7.59021 8.00036 8.17600 9.06197 9.72368 10.62410 11.41333 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002606 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.731090 B =10743.257052 C =11251.725967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 N -0.514 5.514 4 C 0.014 3.986 5 C 0.060 3.940 6 O -0.378 6.378 7 C 0.077 3.923 8 C 0.031 3.969 9 H 0.072 0.928 10 C 0.520 3.480 11 O -0.524 6.524 12 N -0.603 5.603 13 C 0.104 3.896 14 C -0.119 4.119 15 C -0.109 4.109 16 C 0.174 3.826 17 N -0.609 5.609 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.126 3.874 27 C -0.096 4.096 28 C 0.114 3.886 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.025 0.975 46 H 0.254 0.746 47 H 0.030 0.970 48 H 0.040 0.960 49 H 0.088 0.912 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.900 4.194 7.430 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.082 4.082 3 N -0.241 5.241 4 C -0.114 4.114 5 C -0.017 4.017 6 O -0.296 6.296 7 C -0.001 4.001 8 C -0.081 4.081 9 H 0.090 0.910 10 C 0.306 3.694 11 O -0.400 6.400 12 N -0.337 5.337 13 C -0.019 4.019 14 C -0.158 4.158 15 C -0.110 4.110 16 C 0.048 3.952 17 N -0.335 5.335 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.000 4.000 27 C -0.134 4.134 28 C -0.007 4.007 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.106 0.894 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.855 4.342 6.356 24.116 hybrid contribution 1.105 -1.118 0.519 1.655 sum -21.750 3.224 6.876 23.038 Atomic orbital electron populations 1.21898 0.94688 1.02081 1.02298 1.22243 0.95976 0.88338 1.01641 1.62044 1.01392 1.12068 1.48572 1.22941 1.00067 0.94505 0.93921 1.22739 0.81435 0.95224 1.02348 1.88028 1.18190 1.69538 1.53814 1.22556 0.96518 0.86909 0.94088 1.22392 0.89812 0.98182 0.97721 0.91037 1.20077 0.81194 0.79654 0.88446 1.90682 1.65165 1.59357 1.24777 1.48162 1.17584 1.55396 1.12567 1.21797 0.95366 1.01593 0.83103 1.21762 0.94227 0.99521 1.00254 1.22391 0.96643 0.97690 0.94271 1.22230 0.85881 0.87671 0.99388 1.45947 1.18338 1.02385 1.66790 1.18958 0.95297 0.89839 1.30932 0.90499 1.24754 0.98326 0.95693 1.01606 1.69801 1.31340 1.06053 1.49636 0.86241 0.82183 0.78747 0.78823 1.21125 1.21592 1.21287 1.22585 0.87717 0.94490 0.95181 1.21486 0.93898 1.01153 0.96841 1.21709 0.92401 0.95527 0.91090 0.92008 0.92584 0.91555 0.89098 0.95175 0.88600 0.93893 0.91962 0.88211 0.87551 0.91345 0.90324 0.91045 0.90513 0.91715 0.90976 0.95756 0.93642 0.95208 0.94211 0.89401 0.92081 0.91453 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 2 C 0.05 0.46 5.36 -3.82 -0.02 0.44 16 3 N -0.51 -5.54 4.42 -227.73 -1.01 -6.55 16 4 C 0.01 0.11 4.94 -3.72 -0.02 0.09 16 5 C 0.06 0.49 7.01 37.20 0.26 0.75 16 6 O -0.38 -4.03 10.83 -35.23 -0.38 -4.41 16 7 C 0.08 0.83 6.20 37.21 0.23 1.06 16 8 C 0.03 0.34 1.52 -68.75 -0.10 0.24 16 9 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 10 C 0.52 7.07 6.06 -10.98 -0.07 7.00 16 11 O -0.52 -8.82 14.57 5.56 0.08 -8.74 16 12 N -0.60 -7.84 2.95 -172.95 -0.51 -8.35 16 13 C 0.10 1.16 6.13 -3.91 -0.02 1.14 16 14 C -0.12 -1.56 5.24 -26.97 -0.14 -1.70 16 15 C -0.11 -1.86 0.77 -154.42 -0.12 -1.98 16 16 C 0.17 3.91 6.64 -3.16 -0.02 3.89 16 17 N -0.61 -15.06 3.53 -179.79 -0.64 -15.70 16 18 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 19 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.04 11.39 55.49 0.63 -26.41 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.13 2.43 7.72 -3.15 -0.02 2.41 16 27 C -0.10 -1.59 5.22 -26.72 -0.14 -1.72 16 28 C 0.11 1.65 6.29 -3.66 -0.02 1.63 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 6.28 -51.93 -0.33 0.04 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.16 6.44 -51.93 -0.33 0.82 16 33 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.10 0.64 6.05 -51.93 -0.31 0.33 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 1.07 8.00 -51.93 -0.42 0.65 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.73 5.22 -51.92 -0.27 0.46 16 41 H 0.07 0.77 8.07 -51.93 -0.42 0.36 16 42 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 45 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 48 H 0.04 0.74 7.41 -51.93 -0.38 0.36 16 49 H 0.09 1.69 8.01 -51.93 -0.42 1.28 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.07 0.95 7.49 -51.93 -0.39 0.56 16 52 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -32.30 390.00 -10.03 -42.32 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.93 Total: -0.89 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.13 Total: 5.79 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -1.52 Total: -57.00 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.30 Total: -13.15 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.30 -10.03 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035740593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.354 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds